mRNA_H-paniculata_contig55470.13040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55470.13040.1
Unique NamemRNA_H-paniculata_contig55470.13040.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: D7G8Z6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z6_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 3.570e-24
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            WPMPPVR LWR+SPT +L HL+GHEGPGSL+A LQD+GLA ++SSG+RTAH+DF LFQV
Sbjct:   89 WPMPPVRDLWRNSPTMVLSHLLGHEGPGSLYAALQDQGLANSLSSGMRTAHEDFSLFQV 147          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A6H5KRX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.880e-24
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            WPMPPVR LWR+SPT +L HL+GHEGPGSL+A LQD+GLA ++SSG+RTAH+DF LFQV
Sbjct:  380 WPMPPVRDLWRNSPTMVLSHLLGHEGPGSLYAALQDQGLANSLSSGMRTAHEDFSLFQV 438          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A836CLR7_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.010e-21
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            WP+PP RRLWR SPTR+L H+ G E PGSLF+ LQDRGLA +V++G+RT++DDF LFQV
Sbjct:  571 WPLPPQRRLWRESPTRLLSHIWGSESPGSLFSVLQDRGLANSVAAGVRTSYDDFSLFQV 629          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: K8YXD5_NANGC (Insulysin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXD5_NANGC)

HSP 1 Score: 78.6 bits (192), Expect = 1.770e-15
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            WP+PP R  +R+ PTR+L HL+GHEG GS+F+ L   G A+ V +GL T+ DDFCLF+V
Sbjct:  181 WPLPPSRPAYRAPPTRLLSHLLGHEGEGSIFSVLHRAGWASGVHAGLGTSQDDFCLFEV 239          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A7S2S1E0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1E0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.290e-15
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            W +PP + LW + PT +L HL+GHEGPGS+FA LQDRG  TA+S+G R   +D   FQV
Sbjct:   13 WEIPPTKDLWPAPPTALLSHLLGHEGPGSIFAALQDRGWVTALSAGERIGQEDVAAFQV 71          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A7S3P520_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P520_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.480e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQVS 180
            W +P  + +  SSP  +LGHL+GHEGP S+FA LQ+ GL TA+S+G R +  DF +FQVS
Sbjct:  309 WTLPSAQHIPDSSPLSLLGHLLGHEGPSSIFAHLQNEGLLTALSAGPRMSAPDFSIFQVS 368          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A7S0NDL5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NDL5_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 3.810e-12
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            W +PP+R L+RS P RIL HL+GHEG GSL + L+ +G   A+S+G   ++ DF LF+V
Sbjct:  166 WALPPLRPLYRSKPHRILSHLLGHEGEGSLLSLLKSKGWCDALSAGETNSNSDFALFEV 224          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A1Z5JM00_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JM00_FISSO)

HSP 1 Score: 67.0 bits (162), Expect = 2.070e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            +P+P V  L   SP  +L HL+GHEGP S FA LQD GL +++S+G RT+  DF LFQV
Sbjct:  318 FPLPSVHILSDRSPVSVLSHLLGHEGPNSPFAVLQDAGLLSSLSAGQRTSGPDFTLFQV 376          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A1Z5KBP4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBP4_FISSO)

HSP 1 Score: 67.0 bits (162), Expect = 2.070e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            +P+P V  L   SP  +L HL+GHEGP S FA LQD GL +++S+G RT+  DF LFQV
Sbjct:  318 FPLPSVHLLSDRSPVSVLSHLLGHEGPNSPFAVLQDAGLLSSLSAGPRTSGPDFTLFQV 376          
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Match: A0A1E7EVI0_9STRA (Peptidase_M16-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVI0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.070e-11
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 WPMPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHDDFCLFQV 177
            +P+P  R+    +P+ +L HL+GHEGPGS FATLQ++GL +++S+G RT+  DF +FQV
Sbjct:  333 FPIPSDRKTPDRAPSSMLSHLLGHEGPGSAFATLQNKGLLSSLSAGPRTSGPDFTIFQV 391          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55470.13040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Z6_ECTSI3.570e-2474.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRX7_9PHAE3.880e-2474.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CLR7_9STRA5.010e-2167.80Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
K8YXD5_NANGC1.770e-1555.93Insulysin n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A7S2S1E0_9STRA3.290e-1555.93Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3P520_9STRA1.480e-1253.33Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S0NDL5_9EUKA3.810e-1250.85Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A1Z5JM00_FISSO2.070e-1154.24Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KBP4_FISSO2.070e-1154.24Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1E7EVI0_9STRA2.070e-1150.85Peptidase_M16-domain-containing protein n=1 Tax=Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55470contigH-paniculata_contig55470:780..974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.5e-18
Seed eggNOG ortholog2880.D7G8Z6
KEGG koko:K01408
KEGG Pathwayko05010,map05010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
EC3.4.24.56
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size195
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.943808-UTR-H-paniculata_contig55470:779..7851622930582.943808-UTR-H-paniculata_contig55470:779..785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55470 780..785 +
1691481358.563165-UTR-H-paniculata_contig55470:779..7851691481358.563165-UTR-H-paniculata_contig55470:779..785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55470 780..785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.9631848-CDS-H-paniculata_contig55470:785..9741622930582.9631848-CDS-H-paniculata_contig55470:785..974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55470 786..974 +
1691481358.5756059-CDS-H-paniculata_contig55470:785..9741691481358.5756059-CDS-H-paniculata_contig55470:785..974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55470 786..974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55470.13040.1prot_H-paniculata_contig55470.13040.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55470 786..974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55470.13040.1

>prot_H-paniculata_contig55470.13040.1 ID=prot_H-paniculata_contig55470.13040.1|Name=mRNA_H-paniculata_contig55470.13040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MPPVRRLWRSSPTRILGHLMGHEGPGSLFATLQDRGLATAVSSGLRTAHD
DFCLFQVSKQASK
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mRNA from alignment at H-paniculata_contig55470:780..974+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55470.13040.1 ID=mRNA_H-paniculata_contig55470.13040.1|Name=mRNA_H-paniculata_contig55470.13040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig55470:780..974+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCCTATGCCGCCTGTGCGACGATTGTGGAGAAGCTCCCCCACCCGGAT CTTGGGGCATTTGATGGGCCACGAGGGACCTGGAAGTCTATTCGCAACGC TGCAAGACCGGGGTCTGGCGACGGCCGTGTCTTCGGGCCTTCGCACCGCC CACGATGACTTTTGTCTGTTTCAGGTAAGCAAGCAAGCAAGCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55470:780..974+

>mRNA_H-paniculata_contig55470.13040.1 ID=mRNA_H-paniculata_contig55470.13040.1|Name=mRNA_H-paniculata_contig55470.13040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig55470:780..974+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCCTGTGCGACGATTGTGGAGAAGCTCCCCCACCCGGATCTTGGG
GCATTTGATGGGCCACGAGGGACCTGGAAGTCTATTCGCAACGCTGCAAG
ACCGGGGTCTGGCGACGGCCGTGTCTTCGGGCCTTCGCACCGCCCACGAT
GACTTTTGTCTGTTTCAGGTAAGCAAGCAAGCAAGCAAAATGCCGCCTGT
GCGACGATTGTGGAGAAGCTCCCCCACCCGGATCTTGGGGCATTTGATGG
GCCACGAGGGACCTGGAAGTCTATTCGCAACGCTGCAAGACCGGGGTCTG
GCGACGGCCGTGTCTTCGGGCCTTCGCACCGCCCACGATGACTTTTGTCT
GTTTCAGGTAAGCAAGCAAGCAAGCAAA
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