mRNA_H-paniculata_contig55339.13017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55339.13017.1
Unique NamemRNA_H-paniculata_contig55339.13017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55339.13017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55339contigH-paniculata_contig55339:187..1049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size863
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55339.13017.1prot_H-paniculata_contig55339.13017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55339 256..723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930580.0566642-UTR-H-paniculata_contig55339:186..2551622930580.0566642-UTR-H-paniculata_contig55339:186..255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55339 187..255 +
1691481357.2264843-UTR-H-paniculata_contig55339:186..2551691481357.2264843-UTR-H-paniculata_contig55339:186..255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55339 187..255 +
1622930580.0904562-UTR-H-paniculata_contig55339:723..10491622930580.0904562-UTR-H-paniculata_contig55339:723..1049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55339 724..1049 +
1691481357.252759-UTR-H-paniculata_contig55339:723..10491691481357.252759-UTR-H-paniculata_contig55339:723..1049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55339 724..1049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930580.0726683-CDS-H-paniculata_contig55339:255..7231622930580.0726683-CDS-H-paniculata_contig55339:255..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55339 256..723 +
1691481357.239128-CDS-H-paniculata_contig55339:255..7231691481357.239128-CDS-H-paniculata_contig55339:255..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55339 256..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55339.13017.1

>prot_H-paniculata_contig55339.13017.1 ID=prot_H-paniculata_contig55339.13017.1|Name=mRNA_H-paniculata_contig55339.13017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MNVGSVTCTLRKKGVYSPIVHSITLVVRKWRPKLLRLVHLHVVAGSIECM
GRSAFRLETSRLSPALPTKMCLGRREFMFNQHSSCTLVEQTKSHKCRSVT
PDMDMDVCGGGGLSVYRGVVCKSLCTDERVLDGKDLSKISRQATVWNTPF
STDHS*
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mRNA from alignment at H-paniculata_contig55339:187..1049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55339.13017.1 ID=mRNA_H-paniculata_contig55339.13017.1|Name=mRNA_H-paniculata_contig55339.13017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=863bp|location=Sequence derived from alignment at H-paniculata_contig55339:187..1049+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTTATAATAATGACAAAATGTACGATCAACACATGATCGGGTAAATAG
ATAAAAACACAAAAGTGAAATGAACGTAGGGTCGGTAACTTGCACTCTAA
GAAAGAAGGGGGTGTATAGCCCGATTGTGCATTCGATTACGTTGGTCGTG
AGGAAATGGAGACCGAAGCTATTGCGTTTGGTTCACCTCCATGTGGTAGC
CGGCAGTATCGAATGCATGGGGCGCTCAGCGTTTAGGTTGGAAACATCGA
GGCTTTCTCCTGCGCTCCCCACAAAGATGTGTTTGGGGAGGAGAGAGTTT
ATGTTCAATCAGCATTCGTCATGTACTTTAGTGGAGCAAACGAAGTCCCA
CAAATGTAGAAGTGTTACACCCGATATGGATATGGATGTGTGTGGAGGGG
GAGGACTGTCTGTGTATCGCGGCGTGGTGTGCAAGTCTTTGTGCACGGAC
GAACGGGTACTCGACGGAAAGGATCTCAGTAAAATATCCCGCCAGGCTAC
GGTTTGGAACACCCCGTTCAGCACCGACCATAGTTAACACTGCCTTTCGA
TGGTATTCCTTGCATATGGGTGGGCGCTGCGTGCAGGCGATCAGGGAGGA
AGGGAGGGTTGATTGGAGAATGACAGACAGTGCATGGATTCTACTCTCCT
GGCGGACTATCTTCCGATGTTGGCAAGTGCCAAATTAATTCGTTTTTGTG
GGTTCGACCGTGCGCCCTTCTCTGCATGTGGAGCATGTGTTGTTCTATCC
TTTTTATTATGTTGTTTCGAATCAGGGTCTCCAGCGCTGGATGCAGGGGC
ATGTTCGCATGTTGTGTCGTCTAGTATTATTAGTTAGGAGCATGATTTAT
TGCTTGTTTTATT
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Coding sequence (CDS) from alignment at H-paniculata_contig55339:187..1049+

>mRNA_H-paniculata_contig55339.13017.1 ID=mRNA_H-paniculata_contig55339.13017.1|Name=mRNA_H-paniculata_contig55339.13017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig55339:187..1049+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTAGGGTCGGTAACTTGCACTCTAAGAAAGAAGGGGGTGTATAG
CCCGATTGTGCATTCGATTACGTTGGTCGTGAGGAAATGGAGACCGAAGC
TATTGCGTTTGGTTCACCTCCATGTGGTAGCCGGCAGTATCGAATGCATG
GGGCGCTCAGCGTTTAGGTTGGAAACATCGAGGCTTTCTCCTGCGCTCCC
CACAAAGATGTGTTTGGGGAGGAGAGAGTTTATGTTCAATCAGCATTCGT
CATGTACTTTAGTGGAGCAAACGAAGTCCCACAAATGTAGAAGTGTTACA
CCCGATATGGATATGGATGTGTGTGGAGGGGGAGGACTGTCTGTGTATCG
CGGCGTGGTGTGCAAGTCTTTGTGCACGGACGAACGGGTACTCGACGGAA
AGGATCTCAGTAAAATATCCCGCCAGGCTACGGTTTGGAACACCCCGTTC
AGCACCGACCATAGTTAAATGAACGTAGGGTCGGTAACTTGCACTCTAAG
AAAGAAGGGGGTGTATAGCCCGATTGTGCATTCGATTACGTTGGTCGTGA
GGAAATGGAGACCGAAGCTATTGCGTTTGGTTCACCTCCATGTGGTAGCC
GGCAGTATCGAATGCATGGGGCGCTCAGCGTTTAGGTTGGAAACATCGAG
GCTTTCTCCTGCGCTCCCCACAAAGATGTGTTTGGGGAGGAGAGAGTTTA
TGTTCAATCAGCATTCGTCATGTACTTTAGTGGAGCAAACGAAGTCCCAC
AAATGTAGAAGTGTTACACCCGATATGGATATGGATGTGTGTGGAGGGGG
AGGACTGTCTGTGTATCGCGGCGTGGTGTGCAAGTCTTTGTGCACGGACG
AACGGGTACTCGACGGAAAGGATCTCAGTAAAATATCCCGCCAGGCTACG
GTTTGGAACACCCCGTTCAGCACCGACCATAGTTAA
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