mRNA_H-paniculata_contig55309.13013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55309.13013.1
Unique NamemRNA_H-paniculata_contig55309.13013.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55309.13013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55309contigH-paniculata_contig55309:585..884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930579.6671631-CDS-H-paniculata_contig55309:584..8841622930579.6671631-CDS-H-paniculata_contig55309:584..884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55309 585..884 -
1691481357.071645-CDS-H-paniculata_contig55309:584..8841691481357.071645-CDS-H-paniculata_contig55309:584..884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55309 585..884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55309.13013.1prot_H-paniculata_contig55309.13013.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55309 585..884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55309.13013.1

>prot_H-paniculata_contig55309.13013.1 ID=prot_H-paniculata_contig55309.13013.1|Name=mRNA_H-paniculata_contig55309.13013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
KAWIALITTCKSMALKIVQSTESPSEAWRKLQTHYRASDLKEKSRLLREF
NSLRMEPGEKSTKFLLRMDRVANDLERLERTVDEDDRNLVIVNRLSPEYD
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mRNA from alignment at H-paniculata_contig55309:585..884-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55309.13013.1 ID=mRNA_H-paniculata_contig55309.13013.1|Name=mRNA_H-paniculata_contig55309.13013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig55309:585..884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCGTGGATCGCGCTAATCACGACCTGCAAAAGCATGGCGTTGAAGAT
CGTCCAGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCCAAACGC
ACTACCGCGCTAGCGACCTCAAAGAGAAGTCACGTCTGCTGCGCGAATTT
AACTCCCTCAGGATGGAACCCGGGGAAAAATCCACGAAATTCCTTCTGCG
GATGGACCGGGTCGCCAATGACTTGGAACGGCTTGAGAGGACTGTCGACG
AAGATGACAGGAATCTGGTGATAGTGAACAGGCTATCACCAGAGTATGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig55309:585..884-

>mRNA_H-paniculata_contig55309.13013.1 ID=mRNA_H-paniculata_contig55309.13013.1|Name=mRNA_H-paniculata_contig55309.13013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig55309:585..884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCGTGGATCGCGCTAATCACGACCTGCAAAAGCATGGCGTTGAAGAT
CGTCCAGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCCAAACGC
ACTACCGCGCTAGCGACCTCAAAGAGAAGTCACGTCTGCTGCGCGAATTT
AACTCCCTCAGGATGGAACCCGGGGAAAAATCCACGAAATTCCTTCTGCG
GATGGACCGGGTCGCCAATGACTTGGAACGGCTTGAGAGGACTGTCGACG
AAGATGACAGGAATCTGGTGATAGTGAACAGGCTATCACCAGAGTATGAC
AAAGCGTGGATCGCGCTAATCACGACCTGCAAAAGCATGGCGTTGAAGAT
CGTCCAGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCCAAACGC
ACTACCGCGCTAGCGACCTCAAAGAGAAGTCACGTCTGCTGCGCGAATTT
AACTCCCTCAGGATGGAACCCGGGGAAAAATCCACGAAATTCCTTCTGCG
GATGGACCGGGTCGCCAATGACTTGGAACGGCTTGAGAGGACTGTCGACG
AAGATGACAGGAATCTGGTGATAGTGAACAGGCTATCACCAGAGTATGAC
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