mRNA_H-paniculata_contig5510.12985.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5510.12985.1
Unique NamemRNA_H-paniculata_contig5510.12985.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: D7G5B3_ECTSI (Prefoldin subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5B3_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 7.880e-86
Identity = 146/173 (84.39%), Postives = 161/173 (93.06%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCDGRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAEESKTLA 519
            DDVV+FL RLG +EVETPIGAFNELYSKYKLME+NMD+ KQSMK+KVPEIERSLELVRHLQERQ K ETVKTNYSLADTVFAKAEL CDGRVCIWLGASVMVEY+Y+EA+ LLE+NLA+A+EK+ TTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEE +K  EE+K+ A
Sbjct:   36 DDVVQFLARLGVEEVETPIGAFNELYSKYKLMESNMDKAKQSMKDKVPEIERSLELVRHLQERQDKEETVKTNYSLADTVFAKAELKCDGRVCIWLGASVMVEYTYKEALELLERNLATALEKKKTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEAKKRKEEAKSAA 208
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: W7T596_9STRA (Prefoldin subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T596_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.910e-50
Identity = 97/169 (57.40%), Postives = 131/169 (77.51%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCDGRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAEES 507
            +DV  FL+ LG   VET IGAFNELY K K +E ++ R+K SMK K+PEIE++LELV  L+ +QA+ E + T+Y+LADT++AKAE+ C GRVC+WLGA+VM+EYSYEEA  +LE +L +A EK  TT EDLE L+NQ+ T+EVNMARL+NYDV RR+   ++  AA+++
Sbjct:   35 EDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRKALRQEEGAADKT 203
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: A0A835ZGV7_9STRA (Prefoldin subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGV7_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.120e-48
Identity = 96/149 (64.43%), Postives = 121/149 (81.21%), Query Frame = 1 
Query:   43 VETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCDGRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKR 489
            VET IGAFNELYSKYK+ ETN++R + +MK K+PEIERSL+LV+HL ++Q + E V+T+Y+LADTV+ KAEL  DG VCIWLGA+VM+EYSYEEA  LL K+LA+A +K   T EDL+ LRN  ITVEVNMAR++N+DV RRR  E K+
Sbjct:   63 VETAIGAFNELYSKYKMFETNLERTRSNMKAKIPEIERSLDLVKHLIQKQEEDEKVQTHYNLADTVYGKAELTGDGCVCIWLGANVMLEYSYEEAHELLVKSLANAEQKLVETVEDLQLLRNNIITVEVNMARIFNWDVKRRRDLEGKK 211
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: D0MRY9_PHYIT (Prefoldin subunit 3 n=17 Tax=Phytophthora TaxID=4783 RepID=D0MRY9_PHYIT)

HSP 1 Score: 162 bits (410), Expect = 3.130e-42
Identity = 82/168 (48.81%), Postives = 123/168 (73.21%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCD-GRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAE 501
            D V  F+   G   +E  +GA  ++YSKYK MET++ + +++ K K+P+ ++ L++VRHL  ++ + ET++T ++L+D V+AKA + C+ G+VCIWLGA VMVEY YEEA  LLEKN+ASA E+ G  +EDL FLR+Q IT EVN+AR++N+DV RRR+ ++ +  AE
Sbjct:   40 DSVDTFMNACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLQTQFNLSDNVYAKASVDCNVGKVCIWLGAQVMVEYPYEEAQELLEKNVASATERLGQIEEDLSFLRDQIITTEVNIARIFNHDVRRRRQEKDDKLVAE 207
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: A0A7S2Y0F3_9STRA (Prefoldin subunit 3 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F3_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.610e-42
Identity = 91/158 (57.59%), Postives = 118/158 (74.68%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAEL-HCDGRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRR 471
            +DV  F+  +    +ET IGAFNEL+ KYK ME+   + K S  +KVPEIER++ LV++L E +   E V   YSLADTV+AKA++ H  G+VC+WLGA+VMVEY+Y+EA+TLLE NL  A EK+ TT EDLEFLRNQ ITVEVNMAR++N++V  RR
Sbjct:   38 EDVENFVNDID-HPIETIIGAFNELHRKYKFMESQQIQHKASYMQKVPEIERAISLVKYLVENKESEEDVIATYSLADTVYAKAKIEHQQGKVCLWLGANVMVEYTYDEALTLLEANLQKAKEKRATTTEDLEFLRNQVITVEVNMARVFNHNVKLRR 194
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: A0A0N7L5Y1_PLAHL (Prefoldin subunit 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5Y1_PLAHL)

HSP 1 Score: 161 bits (407), Expect = 7.260e-42
Identity = 81/168 (48.21%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCD-GRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAE 501
            D V  ++   G   +E  +GA  ++YSKYK METN+ + +++ K K+PE ++ L++V+HL  ++ + ET++T ++LAD V+A A + C  G+VCIWLGA VMVEYSYEEA  LLEKN+A+A EK    +EDL FLR+Q IT EVN+AR++N+DV RRR+ ++ +   E
Sbjct:   36 DSVESYMTECGVKTIEPLVGALQQMYSKYKFMETNLQKNRETFKRKIPETQKDLDMVQHLMTKRDEGETLQTQFNLADNVYANASVDCSLGKVCIWLGAQVMVEYSYEEAQELLEKNMATASEKLAQIEEDLSFLRDQIITTEVNIARIFNHDVRRRRQEKDTKVVTE 203
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: A0A8K1CBI8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBI8_PYTOL)

HSP 1 Score: 160 bits (406), Expect = 1.090e-41
Identity = 86/168 (51.19%), Postives = 121/168 (72.02%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCD-GRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAE 501
            + V  FL  +G   +E  +GA  +LYSKYK ME N+ + ++S K K+PE E+ LE++RHL ++Q + E  KT+++LAD V+AKA +    G+VCIWLGA+VMVEYSY+EA+TLLE N+A A E+      DL FLR+Q IT EVN+AR++N+DV RRRK +++  AAE
Sbjct:   39 ESVDVFLSSIGIRSIEPLVGALQQLYSKYKFMEVNLQKSRESFKRKIPETEKDLEMLRHLIQKQEEGEDFKTHFNLADNVYAKATVDPSVGKVCIWLGANVMVEYSYDEALTLLENNVAVATERLEQIDADLAFLRDQIITTEVNIARIFNFDVRRRRKEKDESVAAE 206
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: A0A484E4G4_BRELC (Prefoldin subunit 3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4G4_BRELC)

HSP 1 Score: 159 bits (401), Expect = 5.560e-41
Identity = 82/168 (48.81%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCD-GRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAE 501
            D V  F++  G   +E  +GA  ++YSKYK MET++ + +++ K K+P+ ++ L++VRHL  ++ + ET++T++SLAD V+AKA + C  G+VCIWLGA VMVEY Y EA  LLE N+ASA EK    +EDL FLR+Q IT EVN+AR++N+DV RRR+ ++   A E
Sbjct:   40 DSVEVFMEACGVSTIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLVAKKDEGETLQTHFSLADNVYAKASVDCQIGKVCIWLGAQVMVEYPYGEAQELLESNVASATEKLAQIEEDLSFLRDQIITTEVNIARIFNHDVRRRRQEKDNMLAVE 207
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BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: A0A3F2RXD4_9STRA (Prefoldin subunit 3 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXD4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.450e-40
Identity = 81/168 (48.21%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCD-GRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAE 501
            D V  F+   G   +E  +GA  ++YSKYK MET++ + ++S K K+P+ ++ L+ +RHL  ++ + ET++T ++LAD V+AKA + C  G+VCIWLGA VMVEY YEEA+ LLEKN+A+A EK    + DL FLR+Q IT EVN+AR++N+DV RRR+ ++ +  AE
Sbjct:   40 DSVDSFMAATGIKSIEPLVGALQQMYSKYKFMETSLQKNRESFKRKIPDTQKDLDTLRHLISKRDEGETLQTQFNLADNVYAKASVDCSIGKVCIWLGAQVMVEYPYEEALELLEKNVATATEKLEQIETDLSFLRDQIITTEVNIARIFNHDVRRRRQEKDDKLVAE 207
[Close]
BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Match: M4B850_HYAAE (Prefoldin subunit 3 n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B850_HYAAE)

HSP 1 Score: 157 bits (397), Expect = 2.050e-40
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1 
Query:    1 DDVVEFLKRLGADEVETPIGAFNELYSKYKLMETNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVFAKAELHCD-GRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDLEFLRNQSITVEVNMARLYNYDVLRRR 471
            D V  F+   G   ++  +GA  ++YSKYK MET++ + +++   K+P+ E+ L +VRH+  ++   ET+KT++++AD V+AKAE+ C  G+VCIWLGA VMVEY YEEA+ LLEKN+ASA EK    +EDL FLR+  IT EVN+AR++NYDV RRR
Sbjct:   40 DSVDSFMSTCGVKTIDPLVGALQQMYSKYKFMETSLQKSRETFNRKIPDTEKDLAIVRHVITKRDAGETLKTHFNMADNVYAKAEVDCSVGKVCIWLGAHVMVEYEYEEALKLLEKNVASATEKLVQIEEDLFFLRDSIITTEVNIARIFNYDVRRRR 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5510.12985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B3_ECTSI7.880e-8684.39Prefoldin subunit 3 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
W7T596_9STRA4.910e-5057.40Prefoldin subunit 3 n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A835ZGV7_9STRA4.120e-4864.43Prefoldin subunit 3 n=1 Tax=Tribonema minus TaxID=... [more]
D0MRY9_PHYIT3.130e-4248.81Prefoldin subunit 3 n=17 Tax=Phytophthora TaxID=47... [more]
A0A7S2Y0F3_9STRA3.610e-4257.59Prefoldin subunit 3 n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A0N7L5Y1_PLAHL7.260e-4248.21Prefoldin subunit 3 n=1 Tax=Plasmopara halstedii T... [more]
A0A8K1CBI8_PYTOL1.090e-4151.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E4G4_BRELC5.560e-4148.81Prefoldin subunit 3 n=1 Tax=Bremia lactucae TaxID=... [more]
A0A3F2RXD4_9STRA1.450e-4048.21Prefoldin subunit 3 n=2 Tax=Phytophthora kernoviae... [more]
M4B850_HYAAE2.050e-4050.63Prefoldin subunit 3 n=2 Tax=Hyaloperonospora arabi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5510contigH-paniculata_contig5510:1590..5232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue4.7e-57
Seed eggNOG ortholog2880.D7G5B3
Preferred nameVBP1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005844,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007163,GO:0007275,GO:0007399,GO:0007405,GO:0008092,GO:0008150,GO:0008283,GO:0008356,GO:0009987,GO:0015631,GO:0016043,GO:0016272,GO:0017145,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0036445,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045165,GO:0045196,GO:0048103,GO:0048285,GO:0048487,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051225,GO:0051301,GO:0051321,GO:0055057,GO:0055059,GO:0061351,GO:0065003,GO:0070925,GO:0071840,GO:0072089,GO:0090306,GO:0090307,GO:0098722,GO:0140013,GO:0140014,GO:1902850,GO:1903046,GO:1903047,GO:1990904
EggNOG free text desc.tubulin complex assembly
EggNOG OGsKOG3313@1,KOG3313@2759
Ec32 ortholog descriptionPrefoldin
Ec32 orthologEc-14_006890.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2191
Cds size429
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930576.50945-UTR-H-paniculata_contig5510:1589..16691622930576.50945-UTR-H-paniculata_contig5510:1589..1669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5510 1590..1669 +
1691481355.729319-UTR-H-paniculata_contig5510:1589..16691691481355.729319-UTR-H-paniculata_contig5510:1589..1669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5510 1590..1669 +
1622930576.5229082-UTR-H-paniculata_contig5510:2039..20521622930576.5229082-UTR-H-paniculata_contig5510:2039..2052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5510 2040..2052 +
1691481355.7396612-UTR-H-paniculata_contig5510:2039..20521691481355.7396612-UTR-H-paniculata_contig5510:2039..2052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5510 2040..2052 +
1622930576.5817902-UTR-H-paniculata_contig5510:3563..52321622930576.5817902-UTR-H-paniculata_contig5510:3563..5232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5510 3564..5232 +
1691481355.7820132-UTR-H-paniculata_contig5510:3563..52321691481355.7820132-UTR-H-paniculata_contig5510:3563..5232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5510 3564..5232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930576.5340598-CDS-H-paniculata_contig5510:2052..21511622930576.5340598-CDS-H-paniculata_contig5510:2052..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 2053..2151 +
1691481355.7498672-CDS-H-paniculata_contig5510:2052..21511691481355.7498672-CDS-H-paniculata_contig5510:2052..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 2053..2151 +
1622930576.5468311-CDS-H-paniculata_contig5510:2568..26671622930576.5468311-CDS-H-paniculata_contig5510:2568..2667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 2569..2667 +
1691481355.7578714-CDS-H-paniculata_contig5510:2568..26671691481355.7578714-CDS-H-paniculata_contig5510:2568..2667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 2569..2667 +
1622930576.5600696-CDS-H-paniculata_contig5510:2986..30671622930576.5600696-CDS-H-paniculata_contig5510:2986..3067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 2987..3067 +
1691481355.7655706-CDS-H-paniculata_contig5510:2986..30671691481355.7655706-CDS-H-paniculata_contig5510:2986..3067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 2987..3067 +
1622930576.5711012-CDS-H-paniculata_contig5510:3413..35631622930576.5711012-CDS-H-paniculata_contig5510:3413..3563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 3414..3563 +
1691481355.7737782-CDS-H-paniculata_contig5510:3413..35631691481355.7737782-CDS-H-paniculata_contig5510:3413..3563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5510 3414..3563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5510.12985.1prot_H-paniculata_contig5510.12985.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5510 2053..3563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5510.12985.1

>prot_H-paniculata_contig5510.12985.1 ID=prot_H-paniculata_contig5510.12985.1|Name=mRNA_H-paniculata_contig5510.12985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
METNMDRIKQSMKEKVPEIERSLELVRHLQERQAKSETVKTNYSLADTVF
AKAELHCDGRVCIWLGASVMVEYSYEEAVTLLEKNLASAIEKQGTTQEDL
EFLRNQSITVEVNMARLYNYDVLRRRKAEEKRKAAEESKTLA*
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mRNA from alignment at H-paniculata_contig5510:1590..5232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5510.12985.1 ID=mRNA_H-paniculata_contig5510.12985.1|Name=mRNA_H-paniculata_contig5510.12985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3643bp|location=Sequence derived from alignment at H-paniculata_contig5510:1590..5232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGACGTCGTCGAGTTCCTGAAGCGATTAGGGGCAGATGAGGTGGAGAC
ACCTATCGGCGCTTTCAATGAGCTGTACAGGTAGGTAAACGCAACACTCA
TTGGCAAGGGGTCTAGACGTGCTAAAAAAATATGTTTCCCAATCAAACAC
CTTCTGACAGCCGAGATTGTTGTGCGGCTCTCATGGTTCCACCTCTTGTA
GGATGCTGTCGTGCACTGATTCCAGCGATGTTTCCGGACAGCATGCAAAA
ATTCAATGCTGTATATGTGGGTTGCCTTACACAACTGGCGCGTCAGGATG
CTGCCGTTGCGGTCGCTGTGGATCTCCAGTGGAGCTCGTTCCACGATGTC
CTCGTTGAAGTCAACAAAATGCCAGGACATTTTTTACCCCAACAGATGTA
GCCCTCAACCCTCTCCTCCCTTTTTCAATATTGATCTTGTGCTGTTTCAG
CAAATATAAGCTGATGGAGACCAATATGGACAGGATAAAACAGAGCATGA
AAGAAAAGGTGCCTGAGATTGAGCGTTCTCTAGAGCTTGTACGGCACCTG
CAAGAGCGGCAGGTGAGCCTCGATTGTTTTTTTTAATATTTTTGGTATTT
TCAGGTGGTGCCAAATTACGCCTTCTGTACTGTTGGTAATCGACATCTTG
AATCGGAATAGGCAGGGACAAAGCACCACCGTAAAACCAAACCACCAAAC
AAGCATATTTTTTTCGGAGAACGTGCTTTTAGTTTCGGTGCATGCTGCCC
TCTGGCCCACGAATGTTGTCCCATCGGTAACCCTTATTTTAGGATATAAT
TTTCAGTACTAGCAAACCTCCTTTGCTGCATTACTTAGATGCTGGAAAAT
TCACACGTTGCCCAAAAGGTTGCTTCGATTTACAGGCTGCATGCAAGGCA
CGGTGCTGACATCACGAGTTTTCCGTCCCTCTTGACTTGCTGCTGACTGT
TGGTTTGCATGCCCGCGGGCTTCGAGTAGGCGAAGAGCGAAACAGTGAAA
ACCAACTATAGCCTGGCAGACACCGTGTTTGCCAAGGCAGAGCTTCACTG
TGACGGCAGGGTATGCATATGGCTTGGGGTGAGTTGGAGAGGTACAAAGT
GAACGTTATATGGTTAGTATAGTAATTTTGTTTATTCTGATATCATTATA
ATGATGCCGACTGAAGTTATGCAACCCAACTGAATCAAAGCTGTTTTTGT
GTACACTTGAACAAAAAATTAGAGCATGATCAATAAGGACGGGTGGACCC
CGACCATCGATGTGTTATTTATCTTGCCTACTGTTTAAGCGGCTCAAGCG
TTTTGATTGATACATCTGAGTTTTGAAAGTATGTCTTCTTGATGCCGCCG
TGTTATCCCTCTGATTGTCGTGCGTGACATGAAATACAATTTCACAGGCA
TCGGTAATGGTGGAGTACTCATACGAAGAGGCCGTTACCTTGCTGGAGAA
GAATTTGGCAAGCGCGATTGAGAAACAGGTAAAACAGAGACCGGAATTTA
TACTCCCGCCCAAACCTTCAGGCTCCGTCCTCTTGAGGATGCATGGTCAA
GGGTTCAACAGTTACCGCATGCGGAATATACATATGCTATCCCCCCGAAA
TCCCCAATCGCGCCTCCACTCCAATGTTGTCTTCTTCCTATATTTTTTCG
TGTGTCTGGAGGAGAGCTGCAGCAATGATAATGTATGTTCGGGGTGCTCA
GCGTGATGACATGGGATGTGCTCTACTGGGGTTCTGGCGTATGACTTTTC
CCTCGTCGGCTGTGTTGCGGCCCGTGTGCGGTCTGGTTGCTGCTCTCTTG
GGTGTCTTTCCCCTTGATTCGCAGGGAACAACACAAGAAGACTTGGAATT
CCTGCGTAATCAGAGTATCACAGTGGAGGTCAACATGGCGCGGTTGTACA
ACTACGATGTGCTGCGGCGTCGGAAGGCAGAGGAAAAACGGAAAGCTGCC
GAGGAGTCGAAAACGCTTGCATAATACATGAAGAGCGGCCATGTGACTTG
ACTCTGCAGTGGCGGGTGTACCTCCCAATGTACCGCCATTTTTGCATAGA
AAAAAAAGTCCGATTTGCCTCGTAACAGCTCAAAATATTGTTGCAAGTTT
AGCCAAAAAAGTGGACATTTGGGGGTTCGTAACCATTGTAGGTCTGTTGC
AAAATCGATTGCTGGTCGCATGGGCGTGGGGTTTGATGGTTTTGAGCTAA
GCAGTTTGGTTAGAGGAAGGCGTTGTTCATGACAAGGCGCTGCATATGAA
GCAAATTTTGACACCGTTGCTGTTATCTGACTACCGCAAAGCACCGTTAG
AACGCCCTAGGAGTTATCCAATCAGCCCAAATACCTGGAAGACGCTCAGC
ATCAAAATGTGAAGGAAAAGATACCAACTCTTGAAAGTATTCAGCAGTGT
CAACTAAGAATCGTTTTGTTCTGTTGCCGCAAGGACGTTATCACGGTGCC
TATGGCAGTCTCTGAGAATAGCGGTATATTGCTGACTAGAGAGAGAGACA
TTTCGTGCCCTATGGTAAACAACATTTTGGTGAAATTGAGAGTGCATATT
CGATTGAGAGTGCATGTTCAATTGAGAGTCAGCGTTTTGGAATTGTAGGG
GCCTCTTCGAATAAATAACTGGAAGCTCACACGGGTGTGAGCGAGCGTGG
GTGACTCTTGATCTTTTCATCACCTTGTACCATCGTGCCATGATCGAGAG
GTACTGCTGCCATGTCTCACTCACCCATTCGGTGTAAACCTGAGCGACGT
GCAAGATAGGCGTTGTTGCAGTGTCTTGCTGCTGCTGTATGTCCATTGGA
CAAGAGGCGTCCACGACAAACTGCGTGTCGTGTCGTTCTGCAAACCTGTT
TAACCATGTTATGATTTCCTATTCCTCGATTGACCGTAGTGAGCACCATT
TTAACCGTGCTGAAATTATCTGCGAAAAGCTTGTTCGAACATGAAATCCA
TATGCCCGTTACGGTACCGTTCATACGGGCCAAGTCAGCGTATACTGGAA
TGATGCAGCAAAGCCGAGGCTTGATGGTGATAGCAACGTGCTGAAAAAGC
CGAGATCCCCTTTCCCTCTCCTGTCCATGTTAGCAAAGGTCTTCCATAGC
ATCGACAGTTCAAGCTGTCCATCGGAGCGCGACTTTTCATGGTTGACCAT
TACCATGAGCAAACTCAGGCGCAGCATGATGCCAGGGCGCATTGACAAGA
TGATGTTTTTGAAGCTGAAATTTGAGCGCATCTCTGAAGTACGGGCGGTT
TTGCGAAGATTGGACGGAATGAAGCCGGTACAGCAAAGGCGGGGGATGTG
GTCGAAGTGATTAGATTAGGGAGCCCGTGACTATGACATTGCGAGGGAGA
ATCCAGAATTGACGATTAGGGAGGGGGGTACATCGGATGCGGCGTAGTAG
GGCACCGCCAGTAATTAACACTGGATCATGTGAACGCAGAGAAAGTATTG
ACGGAGGATGAGATTTGTGGTTGGCTGCGAGCTGGAGATGCAAAAATGTT
TAGTAACCTTCGAAACAATTTTGGCACTTCGAAGAAAGATAGAAGATGAT
GTCAGGATTAATAATGGTAAGAAAATAATACATTTGAGCTTTTGTGTCAC
ATAATTAGGTTAATTTGAACCTTGGTTCTCAAGATATGCCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5510:1590..5232+

>mRNA_H-paniculata_contig5510.12985.1 ID=mRNA_H-paniculata_contig5510.12985.1|Name=mRNA_H-paniculata_contig5510.12985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig5510:1590..5232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACCAATATGGACAGGATAAAACAGAGCATGAAAGAAAAGGTGCC
TGAGATTGAGCGTTCTCTAGAGCTTGTACGGCACCTGCAAGAGCGGCAGA
TGGAGACCAATATGGACAGGATAAAACAGAGCATGAAAGAAAAGGTGCCT
GAGATTGAGCGTTCTCTAGAGCTTGTACGGCACCTGCAAGAGCGGCAGGC
GAAGAGCGAAACAGTGAAAACCAACTATAGCCTGGCAGACACCGTGTTTG
CCAAGGCAGAGCTTCACTGTGACGGCAGGGTATGCATATGGCTTGGGGCG
AAGAGCGAAACAGTGAAAACCAACTATAGCCTGGCAGACACCGTGTTTGC
CAAGGCAGAGCTTCACTGTGACGGCAGGGTATGCATATGGCTTGGGGCAT
CGGTAATGGTGGAGTACTCATACGAAGAGGCCGTTACCTTGCTGGAGAAG
AATTTGGCAAGCGCGATTGAGAAACAGGCATCGGTAATGGTGGAGTACTC
ATACGAAGAGGCCGTTACCTTGCTGGAGAAGAATTTGGCAAGCGCGATTG
AGAAACAGGGAACAACACAAGAAGACTTGGAATTCCTGCGTAATCAGAGT
ATCACAGTGGAGGTCAACATGGCGCGGTTGTACAACTACGATGTGCTGCG
GCGTCGGAAGGCAGAGGAAAAACGGAAAGCTGCCGAGGAGTCGAAAACGC
TTGCATAAGGAACAACACAAGAAGACTTGGAATTCCTGCGTAATCAGAGT
ATCACAGTGGAGGTCAACATGGCGCGGTTGTACAACTACGATGTGCTGCG
GCGTCGGAAGGCAGAGGAAAAACGGAAAGCTGCCGAGGAGTCGAAAACGC
TTGCATAA
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