mRNA_H-paniculata_contig55.12966.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55.12966.1
Unique NamemRNA_H-paniculata_contig55.12966.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 3.060e-112
Identity = 281/746 (37.67%), Postives = 354/746 (47.45%), Query Frame = 1
Query:  862 LDGDWPEVSGEEVPFEFAHLRESMEIPCSIQLVQRGDRKSLVYVNGTEVTCW-----TAESQRSLQDEKLSAR---------------------------------EGVNTADRDGYGEG-------------------------------AGVKDGTLIRLVGEMAVPRPAYLQVRQGTEGKSDNLLVSHFGLARGGSVSRLDLDPSPRSTYPLAALPPLPSSLRARGGGEWDYSSGR--------NRPKPTLKSTWSGPLLWPNEVNQVPTAALLRLA---------------------RGKNAELQYLAQQAEKKRRDNEAYEREQRRKAREALQQQNVARPRYDSKA----ETRIDNLTRLPLPVLPSPSPVAPRSIPATLPLSPPRMAATPTMAVATGSDIDTHINISGNARNMVQDGAAAGSEMEERGEDAVRRR----------------GGGRTATISGSLLSGDDEHIKAADGLLTECEDGDDGADPGLLLPLPQEDG--VLVADGFLMPGKADGGVYMVLPRDAE--------------------RVNG---------------EERIVRLTGYKRGWFHHRAVWLVLPGGKKVVLTARVHKPLFGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRPTHLLVTTHECTYD-YSFF 2631
            L+  W E  GE+VPFEFA L ++  +PC+IQL  R DR+S+V+V+G E   +     TA +     D++++                                   +G    +RD                                       + G  IRLVGEM + +PAYLQV++G  G+SD LLVS FG  RGG+VSR+DLDP P+       LP + + L    GG                 R +P L  TW+GPLLWPNEVNQV  A  L  +                     RG+ AEL+YLA                  R            R R DS      E   D L                               +  T   A G+ +   +       ++++      S+    G+ + R+R                 GG      G+      +  + A G     E       PG   PL  EDG  VL+ADGFL+PGKADGGVY+V+P  AE                    R  G               E++IVRLT  KRGWF+H+AVW+VLPGGKKVVLTARVHKP+FG AEGELVLLEMP+V+ PL+EQNLPWRE VLV GPDVMFEV+DLD  D+TV+VICAEFFGGR+TMHS+ GGG     G++PSVTESWVLDDNAGPAY++TAADLRGGSPGGRPTH LVT HE +Y+ YS F
Sbjct:  223 LESTWLEDPGEDVPFEFADLHQATSLPCNIQLFPRVDRRSIVFVDGKESRSYRGKKYTATAGVGRMDDEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDGTGKVERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWVSQRRGDAIRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQ-------LPRMFARLEGAVGGSXXXXXXXXXXXXVLSRRTQPRLTGTWAGPLLWPNEVNQVGAAGCLAWSLVRWVTAGRASGRGGPLSVEGRGREAELKYLAT-----------------RNGSSXXXXXXXGRQRQDSSTSRANEGGSDGLA-----------------------------GSGETNGNAGGAHVQQPLRFESQQFSLLR----LESDKFSDGDCSPRKRRETXXXXXXXXXXXXXXGGAPQVPPGTAEPSLLQDGRNAAGTSASTESPPTTL-PGWDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVPAAAEERXXXXXGVGVDGAARGRESRAGGKAGAGAAAAVGSSPTEDKIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGG--QLPGSQPSVTESWVLDDNAGPAYSITAADLRGGSPGGRPTHFLVTVHESSYNTYSLF 908          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 5.010e-110
Identity = 250/552 (45.29%), Postives = 298/552 (53.99%), Query Frame = 1
Query: 1123 GTLIRLVGEMAVPRPAYLQVRQGTEGKSDNLLVSHFGLARGGSVSRLDLDPSPRSTYPLAALPPLPSSLRARGGGEWDYSSGRNRPKPTLKSTWSGPLLWPNEVNQVPTAALLRLARGKNAELQYLAQQAEKKRRDNEAYEREQRRKAREALQQQNVARPRYDSKAE-------TRIDNLTRLPLPVLPSPSPVAPRSIPATLPLSPPRMAATPTMAVATGSDIDTHINISGNARNMVQDGAAAGSEMEERGEDAVRRRGGGRTATISGSLLSGDDEHIKAADGLLTECEDGDDGADPGLLLPLPQEDG--VLVADGFLMPGKADGGVYMVLPRDAE---------------------RVNG---------------EERIVRLTGYKRGWFHHRAVWLVLPGGKKVVLTARVHKPLFGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRPTHLLVTTHECTYD-YSFFPPA 2640
            G  IRLVGEM + +PAYLQV++G  G+SD LLVS FG  RGG+VSR+DLDP P+     A L    S   A             R +P L  TW+GPLLWPNEVNQ  +A+  +   G +     LA   E           +Q    R   QQ ++ R   D  ++        R      LPLPV  + +  AP++ P T   S                              ++QDG  A                    A  S S  S                        PG   PLP EDG  VL+ADGFL+PGKADGGVY+V+P  AE                     R  G               E+RIVRLT  KRGWF+H+AVW+VLPGGKKVVLTARVHKP+FG AEGELVLLEMP+V+ PL+EQNLPWRE VLV GPDVMFEV+DLD  D+TV+VICAEFFGGR+TMHS+ GGG     G++PSVTESWVLDDNAGPAY++TAADLRGGSPGGRPTH LVT HE +Y+ YS F  A
Sbjct:   94 GDAIRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVSRSAAXXXXXXXGGVLSRRMQPRLTGTWAGPLLWPNEVNQDISASRAKEGGGDS-----LAGSGETNGSAGGGAHVQQ--PLRFESQQFSLLRLESDKFSDGDRPPRLRRETEAAALPLPVTGAGAGGAPQAPPNTAEPS------------------------------LLQDGRNA--------------------AGTSASTQSPPPPPTL-----------------PGWDGPLPPEDGDAVLIADGFLVPGKADGGVYLVVPAAAEERRATAAAGLGVDGAARGGESRAEGKAGAGAAAAAGSIPPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDSPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGG--QLPGSQPSVTESWVLDDNAGPAYSITAADLRGGSPGGRPTHFLVTVHESSYNTYSLFAAA 569          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.300e-65
Identity = 122/214 (57.01%), Postives = 144/214 (67.29%), Query Frame = 1
Query: 2014 PQEDGVLVADGFLMPGKADGGVYMVLPRDAERVNG---EERIVRLTGYKRGWFHHRAVWLVLPGGKKVVLTARVHKPLFGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRPTHLLVTTHECTYDYSFFPPATD 2646
            P +  +LVADGFLMPGK DGGVY+VLPR+     G   E   VR++G K+GWF+H+AVW+ +P G++ VL AR  KPLFG   GELVL +MP V +PLA   LPWRE VL  GPDVMF ++DLD +D TVEV  AEFF  RLTMHSV  G      G +  V +SWVLD N GPAY+V AADL G   G  PTHLLVT+HEC YD      A D
Sbjct:   13 PADAALLVADGFLMPGKTDGGVYLVLPRERRGEGGGAAESDFVRVSGIKKGWFYHKAVWVNMPDGRRGVLAARATKPLFGGGRGELVLFDMPSVAQPLAAYALPWRETVLANGPDVMFHLVDLDDADGTVEVFAAEFFARRLTMHSVRWGD--ARRGTQSQVVQSWVLDSNCGPAYSVVAADLLGTGLG--PTHLLVTSHECLYDNRLLKAAGD 222          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: A0A4D9DCX2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCX2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.410e-50
Identity = 105/202 (51.98%), Postives = 137/202 (67.82%), Query Frame = 1
Query: 2020 EDGVLVADGFLMPGKADGGVYMVLPRDAERVNGEERIVRLTGYKRGWFHHRAVWLVL--PGGKKVVLTARVHKPLFGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRPTHLLVTTHECTYD 2619
            E+ +LVADGFLMPG++DGG+Y+V     +     ER+  LT ++ GWF+H+A W+ L  PGG+  +LTAR  KP F   EGELVLL  P+   PLAE N PW+E+VL KGPDVMF+V DLDP+D  +EV  +EFF  RL++H +  G     +G  P V  S VLDD  GPAY+V  ADLRG    GRP+H+LV++HEC Y+
Sbjct:  505 EEALLVADGFLMPGRSDGGLYVV----QQPGTSLERVTSLTRHRPGWFYHKATWVDLLGPGGRPCLLTARATKPFFAQTEGELVLLLQPEGPFPLAEWNTPWQEVVLAKGPDVMFDVADLDPTDDVLEVFASEFFSRRLSLHRIIKGD--WRTGRLPRVLTSEVLDDALGPAYSVVLADLRGQ---GRPSHVLVSSHECQYE 697          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: A0A7S4DAE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAE7_HETAK)

HSP 1 Score: 196 bits (499), Expect = 2.800e-49
Identity = 112/219 (51.14%), Postives = 139/219 (63.47%), Query Frame = 1
Query: 1993 PGLLLPLPQEDGVLVADGFLMPGKADGGVYMVLPRDAERVNGEERIVRLTGYKRGWFHHRAVWLVL-PGGKKVVLTARVHKPLFGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRPTHLLVTTHECTYDYSFFPPATD 2646
            PG +  L +E+ +LVADGFLMPGK DG VY+V    A      ER +RLT    G+F+H+AVW+ L   G+K +LTAR  KPL G AEGELV  E P V  PLA    PW+E V+  GPDVMFEVID+DP D ++E++ AEFF  RLT+ S+      L    +  V +  V+D   GPAY VTAA+LR G PG  PTHLLVT+H C YD     PA+D
Sbjct:  163 PGTVRGL-REEALLVADGFLMPGKNDGAVYLV----ASPGGPGERRLRLTAPAPGFFYHKAVWVDLFQTGQKGILTARAKKPLLGQAEGELVFFEQPLVRDPLASFCTPWKETVITTGPDVMFEVIDIDPDDDSIEIVAAEFFNERLTLTSLAPRRDWLGPN-KIQVKQKMVIDAGCGPAYGVTAANLRTGRPGDPPTHLLVTSHACQYD-----PASD 370          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: L1JIM1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JIM1_GUITC)

HSP 1 Score: 170 bits (431), Expect = 7.840e-40
Identity = 101/195 (51.79%), Postives = 124/195 (63.59%), Query Frame = 1
Query: 2029 VLVADGFLMPGKADGGVYMVLPRDAERVNGEERIVRLTGYKRGWFHHRAVWLVLPGGKKVVLTARVHKPL--FGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRPTHLLVTTHE 2607
            +LVADGFL+PGK DG V +V  +D    N  E   RLT  K+ WF+HRAV L   G  + VLTAR  KP+  F  AEGELV LE P    P AE NLPWRE++L +GPDVMFEV+DLDP D TVEV+ AEFF  RL+  S+        +   P V ++ ++DD  G AY+V AADL G +     +HLLVTTHE
Sbjct:  240 ILVADGFLVPGKNDGSVTIV--KDPGGPN--EVAYRLTESKKSWFYHRAVPLHF-GSARGVLTARARKPILPFQEAEGELVWLEQPDTVNPFAEWNLPWREVILAEGPDVMFEVVDLDPEDDTVEVVAAEFFRQRLSFFSLRWD----ETCKSPKVVQTELIDDKLGQAYSVVAADLEGPN-----SHLLVTTHE 420          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: A0A7S1TPM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.090e-37
Identity = 97/228 (42.54%), Postives = 121/228 (53.07%), Query Frame = 1
Query: 2008 PLPQEDGVLVADGFLMPGKADGGVYMVLPRDAERVNGEERIVRLTGYKRGWFHHRAVWLVLPG-GKKVVLTARVHKPLFGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRP------------------------THLLVTTHECTY 2616
            P   EDGVLV DGFL PG  +GGVY +   D+    G+ ++ RLT  +RGWF+H+AV + L G G   VL AR  KPL G   GELV LE P       E   PW+E VL +GPDVMF+VID D  D  +EV  AEFF  RL+ H +     GL    R ++  S V+DD  GPAY V  A++ G S G                           TH+L+T+HE TY
Sbjct:  190 PWAPEDGVLVCDGFLAPGAGNGGVYFLRGMDSP---GDIQLQRLTPDRRGWFYHKAVLVDLRGDGSYGVLCARGRKPLVGAGSGELVFLEKPPGWAARGESAGPWKETVLSRGPDVMFDVIDEDAGDGVIEVYAAEFFAKRLSKHVI-----GLDDAGRVALRSSKVIDDTCGPAYGVHLANMSGSSAGVAEGSTNTARRRESPFRCIGADLDRVATHVLMTSHESTY 409          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: A0A7S1DNQ2_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DNQ2_HEMAN)

HSP 1 Score: 146 bits (369), Expect = 1.470e-33
Identity = 95/209 (45.45%), Postives = 117/209 (55.98%), Query Frame = 1
Query: 2026 GVLVADGFLMPGKADGGVYMVLPRDAERVNGEERIVRLTGYKRGWFHHRAVWLVLPGGKKVVLTARVHKPL--FGPAEGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRGGSPGGRPTHLLVTTHECTYDYSFFPPATD 2646
            G+LVADGFL+PGK  GGV+ V     +R    E +V LT  +   F+H+AV   + G + V LTAR   PL  +    GELV LE P   +P A  + PWREIVL +GPDVMF+V DLD  D TV+V  AEFF  RLTM S+       +   RP V +  VLD   G AY+V    L G +     +HLLVTTHE T      PP  D
Sbjct:  168 GMLVADGFLVPGKTKGGVHFVTEPGTDR----EEVVTLTEGRSKHFYHKAVPCSIDGHEGV-LTARARLPLVPWMKGVGELVWLEKPDTLQPTAPWSTPWREIVLAEGPDVMFDVADLDEGDTTVQVFAAEFFARRLTMFSILWD----ADAGRPRVVQREVLDSQLGQAYSVQVLSLDGPN-----SHLLVTTHEDT------PPEAD 356          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: A0A7S1G010_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G010_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.320e-28
Identity = 99/293 (33.79%), Postives = 135/293 (46.08%), Query Frame = 1
Query: 1993 PGLLLPLPQEDGVLVADGFLMPGKADGGVYMVLPRDAERVNGEERIVRLT-GYKRG------------------------------WFHHRAVWLVLPG-GKKVVLTARVHKPLFG------PAE-------GELVLLEMPQVER-----------------PLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLR---------------------GGS---PGGRPTHLLVTTHECT 2613
            PGL + L  ED +LVADGFL+PG+ DGG+Y+V         G ER VRL+ G+  G                              WF+H+AVW+ L G G+  +LTAR  +P         P E       G+LV LE P+                    P   +++PW+E +L +GPDVMF V DLDP+D T+++I A+FFG ++T HS       L  G RP V    V+DD+ G +Y +   +L                      GG    PG   TH+LVT+HE T
Sbjct:  129 PGLDVAL--EDALLVADGFLVPGRDDGGIYVVRHPGGAGPLGRERAVRLSPGWDGGKGSRRMRSTVQSLARRLGGIDPVAEEDDARWFYHKAVWIDLTGDGRWSILTARARRPDISFSDDGIPQEDPAVLPSGQLVWLERPRPHHRDKLTGELRDEDGTLFDPFGPRHVPWKERILDEGPDVMFAVADLDPTDDTIDIIAAQFFGKKVTCHS-------LRRGPRPEVISRHVIDDDCGASYGILLVNLSEKDDKDKTHVPSAPLVVAPGTGGDILRPGDTFTHVLVTSHERT 412          
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Match: B5YLS4_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLS4_THAPS)

HSP 1 Score: 133 bits (334), Expect = 4.510e-28
Identity = 101/274 (36.86%), Postives = 129/274 (47.08%), Query Frame = 1
Query: 2020 EDGVLVADGFLMPGKADGGVYMVLPRDAERVNGEERIVRLTGYKR-----------GWFHHRAVWLVLPG-GKKVVLTARVHKPLFG----------PAEGELVLLEMPQ-----------------VERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEVICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAADLRG----------------GSP------GGRPTHLLVTTHECTYDYSF----FPPATD 2646
            ED +LV DGFL+PGK  GG+Y+V  R+      E R+  LTG               WF+HRA+W+ L G G++ +L AR   PL            P  G+LV LE P                  V  P   +N PW+  VL +GPDVMF V DLDPSD TVEVI ++FF  +L++HS+         G  P V    V+DD  G A++   ADL G                GS       G   +HLLVT+HEC+Y  S       PATD
Sbjct:  371 EDALLVTDGFLVPGKDKGGLYVV--RNPGNSVTEWRVC-LTGVTNLQDITINAEGGDWFYHRAIWMDLTGDGRQSILAARAMLPLLKGNSGGEERRTPGRGQLVWLERPMPHSFDSKTGTPLDVDGTVFDPFNVRNAPWKLRVLDEGPDVMFSVADLDPSDDTVEVIASQFFSRKLSLHSI-------KRGPEPKVVFQRVIDDRCGAAFSSLLADLDGLATMQQSEQQPTVVDNGSTVISLKNGDAFSHLLVTSHECSYAESSGQNELEPATD 634          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55.12966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE3.060e-11237.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN5_ECTSI5.010e-11045.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJ47_9STRA1.300e-6557.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DCX2_9STRA3.410e-5051.98Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4DAE7_HETAK2.800e-4951.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1JIM1_GUITC7.840e-4051.79Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S1TPM8_9STRA4.090e-3742.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1DNQ2_HEMAN1.470e-3345.45Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S1G010_9STRA1.320e-2833.79Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
B5YLS4_THAPS4.510e-2836.86Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55contigH-paniculata_contig55:37529..49854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.1e-39
Seed eggNOG ortholog55529.EKX48363
KEGG koko:K16465,ko:K16466
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Exons8
Model size2979
Cds size2979
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55.12966.1prot_H-paniculata_contig55.12966.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55 37529..49854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930572.773104-CDS-H-paniculata_contig55:37528..379521622930572.773104-CDS-H-paniculata_contig55:37528..37952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 37529..37952 -
1691481353.9472358-CDS-H-paniculata_contig55:37528..379521691481353.9472358-CDS-H-paniculata_contig55:37528..37952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 37529..37952 -
1622930572.7926288-CDS-H-paniculata_contig55:38670..388641622930572.7926288-CDS-H-paniculata_contig55:38670..38864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 38671..38864 -
1691481353.9604375-CDS-H-paniculata_contig55:38670..388641691481353.9604375-CDS-H-paniculata_contig55:38670..38864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 38671..38864 -
1622930572.8185656-CDS-H-paniculata_contig55:41783..418611622930572.8185656-CDS-H-paniculata_contig55:41783..41861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 41784..41861 -
1691481353.9708498-CDS-H-paniculata_contig55:41783..418611691481353.9708498-CDS-H-paniculata_contig55:41783..41861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 41784..41861 -
1622930572.850799-CDS-H-paniculata_contig55:42503..426331622930572.850799-CDS-H-paniculata_contig55:42503..42633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 42504..42633 -
1691481353.9819784-CDS-H-paniculata_contig55:42503..426331691481353.9819784-CDS-H-paniculata_contig55:42503..42633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 42504..42633 -
1622930572.8857954-CDS-H-paniculata_contig55:43380..440931622930572.8857954-CDS-H-paniculata_contig55:43380..44093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 43381..44093 -
1691481353.9941645-CDS-H-paniculata_contig55:43380..440931691481353.9941645-CDS-H-paniculata_contig55:43380..44093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 43381..44093 -
1622930572.905612-CDS-H-paniculata_contig55:44916..451771622930572.905612-CDS-H-paniculata_contig55:44916..45177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 44917..45177 -
1691481354.0033689-CDS-H-paniculata_contig55:44916..451771691481354.0033689-CDS-H-paniculata_contig55:44916..45177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 44917..45177 -
1622930572.9433417-CDS-H-paniculata_contig55:45651..459031622930572.9433417-CDS-H-paniculata_contig55:45651..45903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 45652..45903 -
1691481354.012107-CDS-H-paniculata_contig55:45651..459031691481354.012107-CDS-H-paniculata_contig55:45651..45903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 45652..45903 -
1622930572.9611473-CDS-H-paniculata_contig55:48927..498541622930572.9611473-CDS-H-paniculata_contig55:48927..49854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 48928..49854 -
1691481354.021009-CDS-H-paniculata_contig55:48927..498541691481354.021009-CDS-H-paniculata_contig55:48927..49854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 48928..49854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55.12966.1

>prot_H-paniculata_contig55.12966.1 ID=prot_H-paniculata_contig55.12966.1|Name=mRNA_H-paniculata_contig55.12966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=993bp
MCLSITRGWEVGAMRSDSDERVRSSSLSPSVCDSCRTTVIPPRRWRRRRR
RVVQHSQHDCRKRPQPTAGALAFTLFLLNLLTRRAHWDTHANTNIFLTSS
SSSSSAGGVDAFSPLLESIFPRTPKACRRMLRDRPRGRFGGTTTTERAAE
STSSFGQWREATSPFGDGGGNGASRTGSGTPELSRASYALVCSAVEKKQQ
QQQQQQQALLPSEQACKADANWDIDSSFHVQLDVTSRVRAGRLGAVVVST
SSEERGRRIVGNTNAGGIGVAKDREGGKSAARRRSSGLDGDWPEVSGEEV
PFEFAHLRESMEIPCSIQLVQRGDRKSLVYVNGTEVTCWTAESQRSLQDE
KLSAREGVNTADRDGYGEGAGVKDGTLIRLVGEMAVPRPAYLQVRQGTEG
KSDNLLVSHFGLARGGSVSRLDLDPSPRSTYPLAALPPLPSSLRARGGGE
WDYSSGRNRPKPTLKSTWSGPLLWPNEVNQVPTAALLRLARGKNAELQYL
AQQAEKKRRDNEAYEREQRRKAREALQQQNVARPRYDSKAETRIDNLTRL
PLPVLPSPSPVAPRSIPATLPLSPPRMAATPTMAVATGSDIDTHINISGN
ARNMVQDGAAAGSEMEERGEDAVRRRGGGRTATISGSLLSGDDEHIKAAD
GLLTECEDGDDGADPGLLLPLPQEDGVLVADGFLMPGKADGGVYMVLPRD
AERVNGEERIVRLTGYKRGWFHHRAVWLVLPGGKKVVLTARVHKPLFGPA
EGELVLLEMPQVERPLAEQNLPWREIVLVKGPDVMFEVIDLDPSDATVEV
ICAEFFGGRLTMHSVCGGGGGLSSGARPSVTESWVLDDNAGPAYAVTAAD
LRGGSPGGRPTHLLVTTHECTYDYSFFPPATDKKKPPNHPSSSSFSSIPP
EFTNSRDSNGGGGGNDDDDPTHCTDRPTNTNPRSTADRDPDSDADPDDRN
SNTSENYASKSPELLSGDLNSGVRRRRRRSIEVPRGAAGGGEG
back to top

mRNA from alignment at H-paniculata_contig55:37529..49854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55.12966.1 ID=mRNA_H-paniculata_contig55.12966.1|Name=mRNA_H-paniculata_contig55.12966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12326bp|location=Sequence derived from alignment at H-paniculata_contig55:37529..49854- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCTCAGCATCACCAGGGGTTGGGAGGTGGGTGCTATGCGCTCAGA CTCCGATGAGAGAGTGCGCTCATCGTCTCTATCACCATCTGTCTGTGACT CGTGCAGAACCACAGTGATACCGCCACGACGGTGGCGACGACGACGACGA CGAGTCGTTCAACATAGCCAACATGATTGCAGGAAGAGACCCCAACCTAC TGCTGGTGCACTTGCGTTCACCTTGTTCCTCCTAAATTTACTAACACGGC GGGCGCACTGGGATACGCACGCCAACACAAACATCTTCTTGACATCGTCG TCGTCGTCATCATCTGCAGGAGGAGTGGATGCATTCTCTCCGCTCCTTGA GAGCATATTCCCGCGAACGCCTAAAGCGTGTCGGCGGATGCTCAGAGATC GCCCACGCGGTCGATTTGGTGGTACTACTACCACCGAACGGGCGGCGGAG TCCACCTCGTCTTTCGGACAGTGGCGAGAGGCAACGTCCCCGTTCGGTGA CGGCGGTGGAAATGGGGCTTCTCGAACTGGCAGCGGTACACCAGAACTGT CTCGTGCTTCGTACGCATTGGTTTGCTCTGCGGTTGAGAAGAAGCAGCAG CAGCAGCAGCAGCAGCAGCAAGCGTTGCTGCCGTCCGAGCAGGCTTGTAA GGCAGACGCGAATTGGGACATCGACAGCAGTTTTCATGTTCAACTTGACG TGACATCGCGCGTTAGAGCAGGACGACTCGGGGCTGTTGTGGTCTCGACT TCCAGCGAGGAACGAGGTCGTCGAATCGTGGGTAATACTAATGCTGGTGG GATAGGGGTTGCAAAGGATCGAGAGGGGGGGAAATCAGCTGCCAGGCGTC GTTCCTCAGGCTTGGATGGGGACTGGCCTGAGGTATCCGGAGAGGAGGTG CCGTTCGAGTTTGCGCATCTGCGAGAGGTACAACCTGCTTCGTAAATTAC ATACGATGTGGAGTACAGCACAATGTGCAGTGCGGTAAATTAGCATCAAG GCAGCCGCTTACCGTAGGTGACGGAGTATAACACCCGGCCTTTGTATACC ACATACCCTCGAATAACACCGTGGTTGACACTTTTTTTCTGCTGTTCATT ACACGAGGCCATTTATCACCGGAGGTACGTTGTATACCACCCCCCTCTCT CCGGTGATCAGTTTTCGGACCCCAAGTATTACAACCCGGGGGTGTTATAC ACCGTCACGTAGGGTAGCACAAACAATAGCGCCATTAACCTTACTGAGGA GTAGGGGAGGTTGGCTTGTTGTACTGGGTCTATTTTGATAGAAGGTACCA GTCAGCGTTGTGGACAAAACTGGGTGTACTGTTTGTGTTGACGTCTGATG AATCTGGCTCCGAAAAACTACTACTGTATTGTTACTCATTGTATTTGGGT GACTACACGAAAAACATAATACGTGAGAACAATATTCCGTTCGTAAAGAA AGGTTCAATAGATCATTTTCTCTAGTCGCTGGGATTTTTATTCTGATTAT TCCATGCCCTTTTATAATTCCATTTGCAAGAGGAAATGTTGAAATTGTGT CATTTTACTGTTTGTGATCACACCTTGACAAAGTAAAAAGTGTGCAGTGG CAACTTGCTCCAAACAATGCGAATACCCTCTTCCCCCACCTGTTATCATC GCAATTTCATTGCTAGGGGTGCCAGGTAGAACCCAATCGCATGACATTTC GCCGGAGGCTATCTACAACGTTATAACCCCCCCTACTGCTTGCCAACGGG AGATGACTTCACCGGAGACCGCTTTATCATGCTACCATCCCCCCTGTTAT CACCCGGGATACGTTATATACCCCCCCCCCCCCCCTCGAATAACATCCCG AGGTGATATATTTTCTGGCCTCTGAAATTTATCACATGGAAGTGCTATAC TCCATCACCTACGGTTTGTTGGTGAATCGCTTTCGCCATTGCAGCACTGC TTAGTTATAAATTCGTCCACATTTCTGGATGTCGCTCTTTTACCCTTCGC CCGTTTTACAGCACAGCGCGGTACCGTCTAGTACGGTCTACTGGTAACAG ATGGGATCATAAATATTCACGACCGCCGGTTTGAGCGACATGACTACTTC TCATGACCTAAGGTCTGATGCGAATTCCGTTCGTGTATTGGACAATTAAA AGGAGAGGAAAGTGACCCAACACTGTACAAAACATGGCGTCATCTTCCAA GCGGGGTCACCAGCACGACCACGCACGAGGCAGCTGCTGGCAGCGAAAAA TCGAGTGCTATAACTGTTGGTGCTTCCACCTCGTCAGATGCCGCCGTTGG TGCTACTGCTAGCTCTGCGGCTGTTGCCGCCTGTATCCTGAGGGCGTTTC TGACTCTGCGCCCGCTAGTGTCTCGCTTCAAGTTCCGTGTGTTGTCCTCC GTAGAGTAACTGTTCTCTCTTGTAACACATAGTATGGCACTCAACTTCGT ATACTTGAAGATTTGAATAATTCGCGCAAGACATCCTGTGTTGTGGGCGT TTTCTTCTGCAGTTGAACACATGATTGTTGACTTGTTGAGGTACTTCGAA ATACGAATTATCGGCACGTATCTGTTTCATGGGGTTTGACCCTTTCAGCT CTCAAAACTGCCTCGAAACAGAAACGGCACCTGACAGTCCCACAGGGGAG TGAAGGCTTTGGCCTTGAGGTTGGATTAAGACCACGCCTATGACATGGCT TCAAGCCAACCATGAACACTTAATTCCTCTGGATAGCCAATCACATCCAT ATTTTCTCCCATAAAGTAGCAGCTCACTTGTTTCTTTTCTATTATCAGAC TCTAATTCTCACCTGATCTGCATGAGCGCTAATAGTAGTTGAAATTGTAT GAGCAACTCAGGAAATTTCCGAGAATAGTCCGTGTGCACTTTTACTGCTA GTCATGGCTTGGCGTTATGGCCCCTTGAGAACACGATCCGTTTGATATCA TGCCCTGATGTGCGGCTTTGTTTGACACGCACACTATACTGCACAGTCAC TCAGCCAATGGTGTGTGCTTTATATTCCGACAAGTACCAAGTACTGCTGC TGTCTCTTGTTGCTGCCTGTACTCTGTCTGCTGCAGCTAGCCACATGTCT GAACAATGCCGTGAGAAAACATGCTTGTTAAATTTCATATAACGTACCGC GTTGTGTGTAACACACATACACACCTCTGCACAGAAGTCAGTCACTCAAG CTTGCGGCTTGTGCCTTGATGTTGCTGTCGAGCGCTTGCTACGGCCGTGA TTCTAAGAGCCATGCCGACTTATTTACCTCTTTCGTTATCTGTACTCAGC TTAGCTCCCATAATCATATCGTAATCATGAAGAATTTCAGCCCATTCTTC CTGCTCTTCCGCTTAGGGGTTAGATGGGGGCTAGATGGCAGCGGGCGTCA AAAGGTTTCAAGGCGTTTGCAAGATATCAAATCTTGAGATATTTTTCTTT TCTTCTTCCCTTCCTGGCAAATGTGTTGGTCATCGAAATGTATCACATAC CATACATACAATGACGAAAAATATGCAGATAGTGCCCAGTCAATTGTCGT TGGCGTTTTTGCCTTCTGGCTCGATCTTGTTGGAGTGTAGTTGTACATAT GCCACTAATATCCCTAGTAGGTGGAACTCTAGAAAGGAAATTACTTTGAC GTGGTTTTGGCGTCGAATTCCCGCTATTTATCGTCTTTTTCCTTTTACCG TGGTTTCGAATTATCGTACCGCAGGCTTACCGCGAAGCCAAGATACCCAA TACCAAGTACCGCGCGATACGAAGCAAATCGAATACCGTACGGCAGCTAC TACGGTACCCAAATACCATGTACGGTACACCGTAGGGTTCCATGGGGAAA AAACGCACAGCTTTGTCGTTGCCCAGAGACCATTACCAAGAGGATCCGTG CTTGTTCGAACACGCTGCCTTTCATGCACTCTCTCTCTCGCGCGCGCCCA GTCGATGGAAATCCCTTGCTCCATCCAGCTGGTGCAAAGAGGGGATCGCA AATCCCTCGTATATGTGAACGGCACGGAAGTGACATGTTGGACGGCGGAG TCACAGCGAAGCCTTCAAGACGAAAAATTATCGGCGAGAGAAGGTGTAAA TACCGCCGACCGAGACGGGTATGGGGAAGGAGCAGGGGTGAAAGATGGGA CGTTGATCAGGCTGGTGGGAGAAATGGCTGTTCCCAGGCCAGCTTATCTG CAGGTGTGGTCAAATAAGGCGTTGTGCGATATGTAGTTCACCGCGATGTT GAAATCAAACTTTGACTTGTTGGAAGATGGTCTTTTGGGACAATATGACT GCCATTATTCTCGCAAATTTCAATTGGATGAAATACCGGGGGTAGGCACG CGCTCGTGGTACGTTACTGAGTGGAGGTATTTAGCCGTTCATGGGGGCCA GAAGAAAACGAGTTGTGGGGAGCAAGGTATAACACGGATGGCTATAAATG ATTTCAGCCATCTGAGAATTCTCGCTGGGATGTAATTAAAATACTAGAGG GATCTTATCCCCCCCCTGAAAACAAAACACGCTTGCTCACCTTACGCAAT GGGAAACATACCGCAACAGTTTTGAAGAATAACAACAAACAGCCCCCCCC CCCTCCCTCCCTTCCACCACTCTCGTTCCTCTCCCCCTGTACCCCACCCC ACTTGTGGGACTGCCGTATATAAGTAGGTGCGCCAGGGAACTGAAGGGAA GTCGGATAACTTGCTGGTTTCTCACTTCGGTCTTGCGCGCGGTGGTTCGG TGTCGAGGTTGGACCTTGACCCCTCGCCGCGTTCGACGTATCCTTTGGCA GCTTTGCCGCCACTACCGAGCAGTCTGCGCGCGCGGGGTGGCGGGGAATG GGACTATTCCAGTGGCAGGAATCGGCCCAAGCCTACCCTCAAGAGTACTT GGTCTGGCCCCCTGTTATGGCCTAACGAGGTCAACCAGGTGAGACAAGGC ATACTCCGACATTGTGATTATCAAGCCATGCCAATGTACCCAGATATGAG TGCTGGACAAGGATGGACCCCACTTTCCGTCCCCGACCCGCCCCCCATGC GCACGCGGTGTTTGTATCCAGTTTTATGGTTGCAGCTCTCCAGTGCTCTC TTCGTGTTAGTTTTTTGCACTTCTCTGACTCTCGGGGGTGGTGTGGATGG CCATTGTCGATAGCAAATGCCGTCAGTTTGTGCTGTGATGCTGAGGCGGG GAGCGTCTCACTGATGAACTACTACGTGAATTTTGTTTTTGTTGGCCCTG TTTGGTCTGTGGATAGCCACCTGGGCACCGACAGTCAAGCGCTGGCCGCC AGGAGGAGAAAACGGTTTTCCGAGGCTGATTACTTCTTTACGGTACCGTG TTACAATAGGCTTAGGGTTGCAGCTTTTTCAATAGTTGTCGAGAAGAGTT TATTTCTTCTTACCTTTGTAGTGTTCCGTCATGGTGCTGTATTGCCGTTT GCCGGCAGGGCGGTACACAATAGACATTGTCGAACGAACGTTATATCTTC TCTTGCTAGGTTCTTCATTGCGCAATTGGTCTGCGATAACACGGTGCCTC CTCCTCTGACCTGCTGTTATAGTACATGTTGAGCACATGCTCGCATCGCT TCCGTTGCACAAGCGCTACCGTTCGCCCCTTCCACCCGCCGTGTCTTTTT CTTTTTATTTCCTCCATTAATTCACCCACAACAAATACGGACTGCCGTTA CGCACGTTCCCCCCCACCGTAATACACCCAACACATGAACAACGACGACA ACAACCAACAGGTGCCAACCGCGGCGCTGCTTCGTCTTGCCAGGGGCAAG AACGCCGAGCTGCAGTATCTGGCGCAACAAGCGGAGAAGAAACGGCGAGA TAACGAGGCGTACGAGAGGGAGCAGCGGCGGAAGGCGAGGGAGGCATTGC AACAGCAGAACGTCGCACGCCCACGCTACGACAGCAAGGCGGAGACCAGG ATTGACAACCTCACGCGCTTGCCGCTACCCGTTCTGCCTTCGCCTTCACC TGTTGCTCCCAGATCGATCCCAGCAACATTGCCACTGTCACCTCCAAGGA TGGCAGCAACACCAACAATGGCAGTGGCAACAGGAAGCGACATAGATACG CACATTAATATCTCTGGAAACGCTCGAAATATGGTTCAAGATGGTGCGGC CGCGGGGTCGGAAATGGAGGAACGGGGAGAAGATGCCGTGCGACGGCGAG GTGGCGGACGAACGGCAACTATTTCGGGAAGCTTGTTGTCCGGGGACGAT GAACATATCAAGGCTGCAGATGGATTGTTGACGGAATGCGAAGATGGCGA TGATGGTGCCGATCCCGGGTTACTGTTGCCGTTACCGCAGGAAGACGGCG TGCTCGTGGCCGACGGGTTTCTCATGCCTGGTAAGGCCGACGGCGGCGTG TACATGGTGCTTCCGCGAGATGCAGAGAGGGTCAATGGGGAGGAGAGGAT CGTCCGTCTGACGGGATATAAGAGGTGTGTCGGGCGGTGAGCGAGCGCGA TGGTGTTGTCACGATGATGCTTCGCTCTTCAAAAGTAGGGTATGATTTGC TTGAGTCTGGAATATCGTCACCCTGAACGTACAGTAGTAGGTAAAGTGGT ATCGGAGAGATGACTAACTTTTTTTGCAGTATCAGCGATTTAAGAGGTCG TGGGATGTGATGTGTTGTGTAGGAGTAAAGGGGGGTGGGTGTGTATATAT ATATATACAGATAGTATCGTGGGGAAGTCGTTGCTGCTGCTACCACTATT CCTGCTACTAGTAGTTGTTTTTCTAATGTCACTGGGCGATGACAAACACC AGACGATGGTGGGCTGCGTTCTGATCGCGCCCGGTGTCTTCCGTCGCTCC CGACCTCCGTCCCCCTTCATACCTCCTTGCTGGTAGACGTAAACAATTGA AGTTTGAAGTCCGTATCCCCCCCCCCTTCCCCCCGCGGCAATGATACCCC CCCCTGTCCATATGGTGATAACACCCGAACGAGCTCCATGTTTACATTTA GGGTCAAGAATTCCATGTAAGGTCCCGTTAAGAGGGTACAAGGTTCGGCG TCCGGTCTATCCTTTGCGCGCTGGAGCTCCATTGCAAAATAATGAGCGAG GCGGGAATGAGCAACCGTTTGTTTTCTTTTACTTGACTATCCTAAGGAAC CCCGGCATCGTGTCTCCCCGTTGCCGTCACTATGTTTAAATGTTTGTGAT CGGAATGATGGAAAAAACTAGGGGCTGGTTTCATCACAGAGCAGTGTGGC TAGTCCTGCCGGGGGGCAAAAAGGTGGTGCTGACCGCGAGAGTTCACAAG CCGCTGTTCGGCCCGGCGGAGGGCGAGCTAGTGCTTCTGGAGATGCCGCA GGTGTTGCTTGTTGTCATGTGTCCGGTCCGGTCTGGTCGCTGGTCCGCCG ACTCGAGCTTGCTAAAGTCAATTTAAAAATACCCGACCCCCTCCCCTCCC CCACGCCAGCTAGAAGCAGTTTCTCTCTTGAAAACTGAAATTGCCGAAGC AGATCTCTAGTACACCAGTGGACTAATCCACTATTCATATGGCTATGTGA CACTATTGAAGACGTTTGGTCATGTACAACATGTTCGCAATATATATATG AACAAGCGGGCATTACAGACTTGCGCGTTGGGTCGTTATGAAATCCGGTT GGTTTCGAAGTTGTTTTTTAGCAGGCACAAACTCTACTTGCTGTCTAAAG AATGTGCGCGCGTGGTGCGCGAGATGCTCTAGAAACCTCTGCTCCCTCCC GGACATTATTTGGTATGTACGCCACTGACTCATGAAGGCAGTCTTGTTAC TCTTCGTCGAATATAGCTGCATTCGCGTCCCAAAGGAATACCCCACAATT TTTGTATCGAAACGTTTTTCATTATGCTCATGTTCCCAACTACACACAGT GTAGCCCAGCCCCCGTCCCCGTCCCCCCCCCTCCCGACGCCCAGTAGTAC TCGTGCTGAAAATGTGCCTTCATTGCTACCTGCTGCTGCTTAGGTAGAAA GACCACTGGCTGAACAGAATCTCCCGTGGAGAGAGATTGTGCTGGTCAAG GGGCCAGATGTCATGTTTGAGGTGAGGGGGACACTGGCGAACATGTATGT GTAAAGCATGGATTAACGAATGGACGTCCGTATATCGGAAAAGTTAAACA TGTGACTCGCGCAGCGTTGTCCGAGTCAACTCCGTGAATTATTTTCAGTC AATCTTTCAATTCTTTCGACTGTTTTAGATATTCGTAATAGGATATTTTA CGTGCTTTGATTTTATCTCAAGTCCTTATCATACCTTTTAAAAATTATTA TTTGCAACTCTCTGCTGCACTTAGGGAGGTCGGGTCGTTTTCCATCGTTT TGTTCAATTTCTGTTTTTTCCGTTCAATTACGGCCTCCTGGAGAAAGGGA AAAAAAAGTTCGATATTGGGGGGGGAGCGGGGATTATGTGCTGGCCCTCC ATCACGCTCTACCTCAATGGTGTGTTTATTGTGGAGCCTTGTTCAAGTAT TCTTGATGTATATATAGGGGAGAGACAGCAGATACATAAATGGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGTACAACGTCATTTTGTTTT GAATATCTCAAGTAACTCTTTGGAAAGCGGACTCCGTAGAGTCGACATAT ATATGTACAGTATGTTTATAGTTGCTGACGACCAGTGGTGAATAATGGAT ATTGACAAACGCATCGACATAGCTCTAGACAGCTGATTATTACATGAATT CCAGGTGCCAAAAGGGGGTCGTTTTTCGCCGTAAAGGGGCTTTATCTTGA ATTCAGTGTAAAGCAAAAGTGGTCGAACACATTTTTTTTTTGCATATCGG CCAAGTATTACACAAGCCCCGCACACAGTTCATTCGGAGGTCGTAGGTTC GTCAAGAGTTAATAACGTGCACACCCACCCAACCTGTGTCGTGTAGTGAG ATGGCCGGCGTCAATCAATTTCGGCACTTTGTTAACGTTTCGAGGGATAG TTTCCCTTGCTCTTCATGTTATTATCCAAGCTTGTGTTTACCCACCTATC GAGTGCAGCTCGGAGTACTGTTGTGGCTAAAATTTTTGCAGCCGGAGCAC GTCTGCGCTGCGACAACACGCGGGCTCAGTACAGTAGCGTACACGTTATA ACACCCGCTCGAGAGAATACTTGAAAGCACTTTTGCGTTGTCAAGGGGTT TAGCAACTACGGTATGCGAAACACGAGTAGATCCACCTGGGGTAACATTT GGAACACGTCGTGACGGGGAGGGGGTATTCGTGTGTGTGGGGGGGCGGGG GGGCATGGGTATGGGTGCAAGTGGTATCATACTGCGTGTTGTACTAGTAA TTTGTTCACACCGTGGACTGTAGGCAAGGGGGGGGAGGGCGGGCATGTAT CCAACAGTCAATCCACCACCCAAAACCCACACCTTCTCCCTCACTCTATT GCTTAACATTGCTGATGGGATTTGTGGACACCGGTTAGTTGAAGCATTGA CTGGGAGGGATTTCATTCAAGGTAAAAGATCGGCGCTTTTTCGAAAAACA AAATATATATATCGATTGACAGACAAGCAAAGAAAACTGAAGAACCGAAA GCACGAGCGAGAGATACAACAGGTATACAACACACCTTCCTGTTTATACA TACATGTCCTAGAATACCAACTAACATCGCTTAGACACTCTAAATCGGTG CCGGTATATATCCTAGGGGTGCCTATGGAGTGCCTCTGGCTTGCCATATT TTCAATGTCGCATATTTACTACTCGTTTTAACCTTGTTCATGTACATTTC TTGTGACCACCAGGTACAGCCGAAAAGCTTCTTTTACGGGACAAACGTCG AAACTTGTAATGACACGTAGGACAGCGAATAGGAGATGAAAAAGCAGTCA CTATGCGGCCCTCGTATACACATAGTGTTCTCGTGTTTTGGAGTGCTAAC CTGTTGCCCGGGGCCTAGCTAACCCCACTGTGCGACCTTGGAATACATTA TGCTGAGAAAGCTGTACATGAAGAAGTGCTTACTCCCTTATAACCACTGC TACAGCTCATCCACAACAAAGCCGTGCATGCCCACCAGGCGATCTGACTT TCGAGTGGACTTGGCGAATGTTTGGGCATGTTGCTTGGCAGATCGATAGG GTCCTGCTCGCATGACATACATTTTGACCTCATCATGACCGAGAGTCGGG ACTTGTTGCACTTGCTCGACCGGGCACATGGGCTAGGACAACCTCCACAA GGGACTGTTAAAAAGTTGATGCACAGCTCTTTTACCAACTGCTGAATCCT AAGCACAAAGACCACGGGGGCTATCCGCGTTCCCCCCCCCAAGATCTCAA TTTTTGACGTCCGTTTTCCCTCTCCCTCACGCGAACATCTTTGCTAACTC GCGGCCTGTAAGTTGTTCACCCCCCGGACAAAGATGAATACATGTCGTAT TCGTTACGAATATATATATATATATATATATATATATATATTCACATGAG TTTCATAATGAGTTTGTGTGATTAAGGTGCCCCGAACCATTCATGGCTGC TAATAGTACTCGTAAATCGAATGGACAGGGGCTGGTACTTTATTCCATGT GTCCGCTCATTCTGAAATTCAGGCGAATACTCTTCAATGTTCGTGGCGAA TACGCCAATATTCGTACTTGTCCGGAGGGTGAAATTGTTTTATTTCTTCT CTCAGTAGTTGAAGGGGTTGACAAAGACCTAACCCTGCTCTGTGTATGTA GATACTTCTGTCGTCACCCCATCCCCTCCCCCCCCGTCCCCCCCAGTTGG TCAAAATTGCTCATGAGCACTGTATGCACCGTGCACTATGCGGGCATCAC TATGGGCTCCATAACCCCAGCATGGGATGCCCTTGTGAAAAATGTACTTG TTCATATATTCACAATCGATCATGTCGTTGTTAGTTTTTTTCTTGTTTCG CCCCGACAAAAATCTGCACGAACTCAAACAACAACACAAGGTGATCGACT TGGACCCGTCAGACGCCACCGTCGAGGTCATTTGTGCAGAGTTTTTCGGT GGGCGATTGACAATGCACTCTGTCTGTGGCGGCGGTGGGGGTTTGTCCTC GGGGGCACGTCCGTCGGTCACGGAGTCATGGGTATTGGATGATAACGCGG GGCCCGCGTACGCCGTCACGGCAGCTGATTTGCGGTAAGGGTTTGAGTGT TTTTGAGGAAAGTACCGTTGATCGGTGTGGATGTTTCATGTTATATGGAT TTCGTTTTTTTTTGCTTCTTGCTTTTCGTTTTTTTGCCGTTCGTGCGCCA CATAGCAGCCGTTTTTTGATCCACCTCAAGAATTCGTTGTACTGTCGTCT CGAGCAACGGATATCGAGACGGTGGCCACCCCCGCTTGCCCCCTTCCGCT CCGTGTTTTGCCACGAAAGGCTGCACCGTCTGAAGATAGCTTGGTTCGGG AAGCTGTTTGTGTGGTCGTGTTCCGTGCGTTTGTGCTGTGTTTAGTCGTG TTTTTGCTGAAAAAGTTACTGTCGATGAGGCACATCTCGAACTTTCCGCG TACAGTAGTTATTGAACTCTTAACACATATTTATGCATTTGGTAAAATTG CACCCACAATCTAATTTTCACTCAGAGTTCATCAATTTCATTCGCCACTT TTTATTTTCCCAAATACCATCTAACCTCTTTTGTGCCTCTCCTTACATCG TCTCCCCTCGAAAATGATGACGTTTCCCGTTTCGTTTTACAGAAATTTGC ACGTATCTCCAAGATTGTACATGGATGTGTTGATGAATGCACTGCCCCGC CCCCCCCACCCCCCCCCCCTCTCCGCCCGACCATTGCGCCCGTATCCGTG GTACTTCCAACATTGCCTCAATCTCTCCACTCTACCAAAAATCACCATAC AGCGGCGGCAGCCCGGGAGGGCGGCCGACCCACCTCTTGGTCACAACGCA CGAGTGCACCTATGACTACTCCTTCTTTCCTCCGGCCACCGACAAAAAGA AGCCACCCAATCATCCTTCATCATCTTCTTTTTCGTCAATTCCGCCGGAG TTTACTAATTCTCGCGACAGCAATGGGGGTGGCGGCGGCAACGACGACGA TGACCCGACCCACTGCACAGACCGGCCTACCAACACCAACCCTCGTTCCA CCGCAGACCGGGATCCGGACTCAGACGCAGACCCGGACGATAGGAATAGC AATACTTCCGAGAATTATGCTTCGAAGTCTCCTGAATTATTAAGCGGAGA TCTCAATTCTGGTGTCAGGCGACGCCGTAGGCGGAGCATAGAGGTACCCC GAGGGGCCGCGGGGGGGGGAGAGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig55:37529..49854-

>mRNA_H-paniculata_contig55.12966.1 ID=mRNA_H-paniculata_contig55.12966.1|Name=mRNA_H-paniculata_contig55.12966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5958bp|location=Sequence derived from alignment at H-paniculata_contig55:37529..49854- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCTCAGCATCACCAGGGGTTGGGAGGTGGGTGCTATGCGCTCAGA
CTCCGATGAGAGAGTGCGCTCATCGTCTCTATCACCATCTGTCTGTGACT
CGTGCAGAACCACAGTGATACCGCCACGACGGTGGCGACGACGACGACGA
CGAGTCGTTCAACATAGCCAACATGATTGCAGGAAGAGACCCCAACCTAC
TGCTGGTGCACTTGCGTTCACCTTGTTCCTCCTAAATTTACTAACACGGC
GGGCGCACTGGGATACGCACGCCAACACAAACATCTTCTTGACATCGTCG
TCGTCGTCATCATCTGCAGGAGGAGTGGATGCATTCTCTCCGCTCCTTGA
GAGCATATTCCCGCGAACGCCTAAAGCGTGTCGGCGGATGCTCAGAGATC
GCCCACGCGGTCGATTTGGTGGTACTACTACCACCGAACGGGCGGCGGAG
TCCACCTCGTCTTTCGGACAGTGGCGAGAGGCAACGTCCCCGTTCGGTGA
CGGCGGTGGAAATGGGGCTTCTCGAACTGGCAGCGGTACACCAGAACTGT
CTCGTGCTTCGTACGCATTGGTTTGCTCTGCGGTTGAGAAGAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAGCGTTGCTGCCGTCCGAGCAGGCTTGTAA
GGCAGACGCGAATTGGGACATCGACAGCAGTTTTCATGTTCAACTTGACG
TGACATCGCGCGTTAGAGCAGGACGACTCGGGGCTGTTGTGGTCTCGACT
TCCAGCGAGGAACGAGGTCGTCGAATCGTGGGTAATACTAATGCTGGTGG
GATAGGGGTTGCAAAGGATCGAGAGGGGGGGAAATCAGCTGCCAGGCGTC
GTTCCTCAGGCTTGGATGGGGACTGGCCTGAGGTATCCGGAGAGGAGGTG
CCGTTCGAGTTTGCGCATCTGCGAGAGATGTGTCTCAGCATCACCAGGGG
TTGGGAGGTGGGTGCTATGCGCTCAGACTCCGATGAGAGAGTGCGCTCAT
CGTCTCTATCACCATCTGTCTGTGACTCGTGCAGAACCACAGTGATACCG
CCACGACGGTGGCGACGACGACGACGACGAGTCGTTCAACATAGCCAACA
TGATTGCAGGAAGAGACCCCAACCTACTGCTGGTGCACTTGCGTTCACCT
TGTTCCTCCTAAATTTACTAACACGGCGGGCGCACTGGGATACGCACGCC
AACACAAACATCTTCTTGACATCGTCGTCGTCGTCATCATCTGCAGGAGG
AGTGGATGCATTCTCTCCGCTCCTTGAGAGCATATTCCCGCGAACGCCTA
AAGCGTGTCGGCGGATGCTCAGAGATCGCCCACGCGGTCGATTTGGTGGT
ACTACTACCACCGAACGGGCGGCGGAGTCCACCTCGTCTTTCGGACAGTG
GCGAGAGGCAACGTCCCCGTTCGGTGACGGCGGTGGAAATGGGGCTTCTC
GAACTGGCAGCGGTACACCAGAACTGTCTCGTGCTTCGTACGCATTGGTT
TGCTCTGCGGTTGAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGC
GTTGCTGCCGTCCGAGCAGGCTTGTAAGGCAGACGCGAATTGGGACATCG
ACAGCAGTTTTCATGTTCAACTTGACGTGACATCGCGCGTTAGAGCAGGA
CGACTCGGGGCTGTTGTGGTCTCGACTTCCAGCGAGGAACGAGGTCGTCG
AATCGTGGGTAATACTAATGCTGGTGGGATAGGGGTTGCAAAGGATCGAG
AGGGGGGGAAATCAGCTGCCAGGCGTCGTTCCTCAGGCTTGGATGGGGAC
TGGCCTGAGGTATCCGGAGAGGAGGTGCCGTTCGAGTTTGCGCATCTGCG
AGAGTCGATGGAAATCCCTTGCTCCATCCAGCTGGTGCAAAGAGGGGATC
GCAAATCCCTCGTATATGTGAACGGCACGGAAGTGACATGTTGGACGGCG
GAGTCACAGCGAAGCCTTCAAGACGAAAAATTATCGGCGAGAGAAGGTGT
AAATACCGCCGACCGAGACGGGTATGGGGAAGGAGCAGGGGTGAAAGATG
GGACGTTGATCAGGCTGGTGGGAGAAATGGCTGTTCCCAGGCCAGCTTAT
CTGCAGTCGATGGAAATCCCTTGCTCCATCCAGCTGGTGCAAAGAGGGGA
TCGCAAATCCCTCGTATATGTGAACGGCACGGAAGTGACATGTTGGACGG
CGGAGTCACAGCGAAGCCTTCAAGACGAAAAATTATCGGCGAGAGAAGGT
GTAAATACCGCCGACCGAGACGGGTATGGGGAAGGAGCAGGGGTGAAAGA
TGGGACGTTGATCAGGCTGGTGGGAGAAATGGCTGTTCCCAGGCCAGCTT
ATCTGCAGGTGCGCCAGGGAACTGAAGGGAAGTCGGATAACTTGCTGGTT
TCTCACTTCGGTCTTGCGCGCGGTGGTTCGGTGTCGAGGTTGGACCTTGA
CCCCTCGCCGCGTTCGACGTATCCTTTGGCAGCTTTGCCGCCACTACCGA
GCAGTCTGCGCGCGCGGGGTGGCGGGGAATGGGACTATTCCAGTGGCAGG
AATCGGCCCAAGCCTACCCTCAAGAGTACTTGGTCTGGCCCCCTGTTATG
GCCTAACGAGGTCAACCAGGTGCGCCAGGGAACTGAAGGGAAGTCGGATA
ACTTGCTGGTTTCTCACTTCGGTCTTGCGCGCGGTGGTTCGGTGTCGAGG
TTGGACCTTGACCCCTCGCCGCGTTCGACGTATCCTTTGGCAGCTTTGCC
GCCACTACCGAGCAGTCTGCGCGCGCGGGGTGGCGGGGAATGGGACTATT
CCAGTGGCAGGAATCGGCCCAAGCCTACCCTCAAGAGTACTTGGTCTGGC
CCCCTGTTATGGCCTAACGAGGTCAACCAGGTGCCAACCGCGGCGCTGCT
TCGTCTTGCCAGGGGCAAGAACGCCGAGCTGCAGTATCTGGCGCAACAAG
CGGAGAAGAAACGGCGAGATAACGAGGCGTACGAGAGGGAGCAGCGGCGG
AAGGCGAGGGAGGCATTGCAACAGCAGAACGTCGCACGCCCACGCTACGA
CAGCAAGGCGGAGACCAGGATTGACAACCTCACGCGCTTGCCGCTACCCG
TTCTGCCTTCGCCTTCACCTGTTGCTCCCAGATCGATCCCAGCAACATTG
CCACTGTCACCTCCAAGGATGGCAGCAACACCAACAATGGCAGTGGCAAC
AGGAAGCGACATAGATACGCACATTAATATCTCTGGAAACGCTCGAAATA
TGGTTCAAGATGGTGCGGCCGCGGGGTCGGAAATGGAGGAACGGGGAGAA
GATGCCGTGCGACGGCGAGGTGGCGGACGAACGGCAACTATTTCGGGAAG
CTTGTTGTCCGGGGACGATGAACATATCAAGGCTGCAGATGGATTGTTGA
CGGAATGCGAAGATGGCGATGATGGTGCCGATCCCGGGTTACTGTTGCCG
TTACCGCAGGAAGACGGCGTGCTCGTGGCCGACGGGTTTCTCATGCCTGG
TAAGGCCGACGGCGGCGTGTACATGGTGCTTCCGCGAGATGCAGAGAGGG
TCAATGGGGAGGAGAGGATCGTCCGTCTGACGGGATATAAGAGGTGCCAA
CCGCGGCGCTGCTTCGTCTTGCCAGGGGCAAGAACGCCGAGCTGCAGTAT
CTGGCGCAACAAGCGGAGAAGAAACGGCGAGATAACGAGGCGTACGAGAG
GGAGCAGCGGCGGAAGGCGAGGGAGGCATTGCAACAGCAGAACGTCGCAC
GCCCACGCTACGACAGCAAGGCGGAGACCAGGATTGACAACCTCACGCGC
TTGCCGCTACCCGTTCTGCCTTCGCCTTCACCTGTTGCTCCCAGATCGAT
CCCAGCAACATTGCCACTGTCACCTCCAAGGATGGCAGCAACACCAACAA
TGGCAGTGGCAACAGGAAGCGACATAGATACGCACATTAATATCTCTGGA
AACGCTCGAAATATGGTTCAAGATGGTGCGGCCGCGGGGTCGGAAATGGA
GGAACGGGGAGAAGATGCCGTGCGACGGCGAGGTGGCGGACGAACGGCAA
CTATTTCGGGAAGCTTGTTGTCCGGGGACGATGAACATATCAAGGCTGCA
GATGGATTGTTGACGGAATGCGAAGATGGCGATGATGGTGCCGATCCCGG
GTTACTGTTGCCGTTACCGCAGGAAGACGGCGTGCTCGTGGCCGACGGGT
TTCTCATGCCTGGTAAGGCCGACGGCGGCGTGTACATGGTGCTTCCGCGA
GATGCAGAGAGGGTCAATGGGGAGGAGAGGATCGTCCGTCTGACGGGATA
TAAGAGGGGCTGGTTTCATCACAGAGCAGTGTGGCTAGTCCTGCCGGGGG
GCAAAAAGGTGGTGCTGACCGCGAGAGTTCACAAGCCGCTGTTCGGCCCG
GCGGAGGGCGAGCTAGTGCTTCTGGAGATGCCGCAGGGGCTGGTTTCATC
ACAGAGCAGTGTGGCTAGTCCTGCCGGGGGGCAAAAAGGTGGTGCTGACC
GCGAGAGTTCACAAGCCGCTGTTCGGCCCGGCGGAGGGCGAGCTAGTGCT
TCTGGAGATGCCGCAGGTAGAAAGACCACTGGCTGAACAGAATCTCCCGT
GGAGAGAGATTGTGCTGGTCAAGGGGCCAGATGTCATGTTTGAGGTAGAA
AGACCACTGGCTGAACAGAATCTCCCGTGGAGAGAGATTGTGCTGGTCAA
GGGGCCAGATGTCATGTTTGAGGTGATCGACTTGGACCCGTCAGACGCCA
CCGTCGAGGTCATTTGTGCAGAGTTTTTCGGTGGGCGATTGACAATGCAC
TCTGTCTGTGGCGGCGGTGGGGGTTTGTCCTCGGGGGCACGTCCGTCGGT
CACGGAGTCATGGGTATTGGATGATAACGCGGGGCCCGCGTACGCCGTCA
CGGCAGCTGATTTGCGGTGATCGACTTGGACCCGTCAGACGCCACCGTCG
AGGTCATTTGTGCAGAGTTTTTCGGTGGGCGATTGACAATGCACTCTGTC
TGTGGCGGCGGTGGGGGTTTGTCCTCGGGGGCACGTCCGTCGGTCACGGA
GTCATGGGTATTGGATGATAACGCGGGGCCCGCGTACGCCGTCACGGCAG
CTGATTTGCGCGGCGGCAGCCCGGGAGGGCGGCCGACCCACCTCTTGGTC
ACAACGCACGAGTGCACCTATGACTACTCCTTCTTTCCTCCGGCCACCGA
CAAAAAGAAGCCACCCAATCATCCTTCATCATCTTCTTTTTCGTCAATTC
CGCCGGAGTTTACTAATTCTCGCGACAGCAATGGGGGTGGCGGCGGCAAC
GACGACGATGACCCGACCCACTGCACAGACCGGCCTACCAACACCAACCC
TCGTTCCACCGCAGACCGGGATCCGGACTCAGACGCAGACCCGGACGATA
GGAATAGCAATACTTCCGAGAATTATGCTTCGAAGTCTCCTGAATTATTA
AGCGGAGATCTCAATTCTGGTGTCAGGCGACGCCGTAGGCGGAGCATAGA
GGTACCCCGAGGGGCCGCGGGGGGGGGAGAGGGCCGGCGGCAGCCCGGGA
GGGCGGCCGACCCACCTCTTGGTCACAACGCACGAGTGCACCTATGACTA
CTCCTTCTTTCCTCCGGCCACCGACAAAAAGAAGCCACCCAATCATCCTT
CATCATCTTCTTTTTCGTCAATTCCGCCGGAGTTTACTAATTCTCGCGAC
AGCAATGGGGGTGGCGGCGGCAACGACGACGATGACCCGACCCACTGCAC
AGACCGGCCTACCAACACCAACCCTCGTTCCACCGCAGACCGGGATCCGG
ACTCAGACGCAGACCCGGACGATAGGAATAGCAATACTTCCGAGAATTAT
GCTTCGAAGTCTCCTGAATTATTAAGCGGAGATCTCAATTCTGGTGTCAG
GCGACGCCGTAGGCGGAGCATAGAGGTACCCCGAGGGGCCGCGGGGGGGG
GAGAGGGC
back to top