mRNA_H-paniculata_contig5496.12958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5496.12958.1
Unique NamemRNA_H-paniculata_contig5496.12958.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 1.250e-118
Identity = 193/280 (68.93%), Postives = 227/280 (81.07%), Query Frame = 3 
Query:  204 DPAADDMAQRVQRAMDIRGRLKDSRVPV-GGQGLAGFYGVGLGLAIDEVTMPPFKDTTDGVGKGGEKDLEPLIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQAWKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAINE 1040
            DPAA+  AQR+QRA+DIRGRLKDSRVPV G +GL  FYGVGLGLA++EV  P   +   G  KGG KD +  I CL+G+++SAWNPPP QRR+ GDL+YLEV ALDGTV+++T TQ GFYVNGT + NFDP P + N CHSHELA CLL  + SFAKAWNNAV QAW+R Q+DDPVHALARAM+EGRGD VMVKPQWN P+PD KW  HK DPGRAQDDLS G+GM++RGVPREWNDEYQ LLEL +DT +  +TRSRAL KLL DFQ+AATAG +AI++
Sbjct:  168 DPAAEAAAQRIQRALDIRGRLKDSRVPVVGAEGLGAFYGVGLGLAVEEVASPS-PEEGGGKDKGG-KDRDGPITCLKGVSVSAWNPPPPQRRLVGDLMYLEVVALDGTVINITCTQGGFYVNGTSRGNFDPRPISGNPCHSHELAVCLLARNSSFAKAWNNAVAQAWERIQSDDPVHALARAMREGRGDTVMVKPQWNMPIPDPKWGEHKADPGRAQDDLSSGFGMEDRGVPREWNDEYQCLLELPSDTAELSLTRSRALHKLLCDFQDAATAGAVAISD 445
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BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A836CKQ1_9STRA (Clustered mitochondria-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.070e-43
Identity = 112/268 (41.79%), Postives = 141/268 (52.61%), Query Frame = 3 
Query:  249 DIRGRLKDSRVPVGG-QGLAGFYGVGLGLAIDEVTMPPFKDTTDGVGKGGEKDLEPLIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQAWKRAQA-DDPVHALARAMQEGRGDVVMVKPQWNCPVP----DTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAI 1034
            D   RLKD+ +PVG  QGLA FY V L   I  V          G+G G          CL+ +   AWNPPPA+RR+ GDL+YLEV  LD   LHVT T  GFYVN TR   FDP PAA     SH+L TCL++ASPSF + W   + +A +RA   +DP+  LA  +++G+ D V   PQWN P      +     H  D  RA++D +  +GM+ERG  R+WN+E QS                        DFQEAAT G  AI
Sbjct:  240 DALARLKDASIPVGRPQGLAAFYDVALATDISHVPKGA------GLGAGSR--------CLKSLVFGAWNPPPARRRLLGDLVYLEVVTLDDATLHVTATPAGFYVNNTRHATFDPAPAAVPH-FSHDLLTCLISASPSFREHWTAVMARAAERAVLPEDPLQTLAVMVRDGKVDAVTTTPQWNVPNTTEGINNPLGPHMADQSRAEEDATSTFGMEERGPLRDWNEELQS------------------------DFQEAATLGAQAI 468
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BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A4D9CWV2_9STRA (Clu domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.300e-37
Identity = 85/204 (41.67%), Postives = 117/204 (57.35%), Query Frame = 3 
Query:  423 CLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQAWKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAI 1034
            CL  +  S WNPPPA RR+ GDLLYLEV A+DG+VLH+T    GFYVNGTR + FDP+P    +  +H+L   L  A P F  AW  AV+ A   ++ D+P+ +LA          V+ +              H  D GR+ +DL   +GMDERG  R+WN++YQ   E+   T  + + R++ L ++L DF EAA AG LA+
Sbjct:  266 CLHNLGFSGWNPPPAHRRLQGDLLYLEVQAMDGSVLHLTAVPRGFYVNGTRGQVFDPSPDPAAAHFAHDLLPLLGAALPCFQDAWRQAVLAARDHSRPDEPMESLALG-------TVLAR--------------HHLDEGRSAEDLVQAFGMDERGALRDWNEDYQGAREMPAGTVGEKIVRAKVLHRVLADFGEAAVAGALAV 448
[Close]
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A067CWV9_SAPPC (Clu domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CWV9_SAPPC)

HSP 1 Score: 154 bits (389), Expect = 2.060e-35
Identity = 96/213 (45.07%), Postives = 124/213 (58.22%), Query Frame = 3 
Query:  414 LIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNN--AVIQAWKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAINEVT 1046
            L  C+  I +S +NPPP  R++AGDL YLEVT  DG+V  +T    GFY+N + K +FDP P A+   H H L   LL ASP FA  +    AV  AW  A A   V A+ +A   G   +V     W  PV D+    H  D  RAQDDLS G  +DERGV R+WN+EYQ   EL N T  + + RSR L+K++ +F +AATAG +AI + T
Sbjct:  157 LPKCIESIVVSGFNPPPGPRKLAGDLTYLEVTLTDGSVHQITAHVAGFYINKSTKTSFDPRPVAS---HHHLLLDVLLAASPVFAAQYAKLLAVAAAWATAGASS-VEAMVQA-SAGAQSLV-----WTTPVNDS---AHAFDANRAQDDLSVG--IDERGVIRDWNEEYQCARELPNATLREQIVRSRVLFKIMAEFADAATAGAIAIVDGT 354
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BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A1V9ZE05_9STRA (Eukaryotic translation initiation factor 3 subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZE05_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.180e-33
Identity = 94/213 (44.13%), Postives = 120/213 (56.34%), Query Frame = 3 
Query:  414 LIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNN--AVIQAWKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAINEVT 1046
            L  C+  I +S +NPPP  R++AGDL YLEVT  DG VL +T    GF+VN + K  FDP PAA    H H L   L  ASP+FA  +    A  +AW  A A   V A+ +A   G   +V     W  PV  T    H  D  RAQDDLS G  +DERGV R+WN+EYQ   EL   T  + + R+R L+K++ +F EAAT G +AI + T
Sbjct:  228 LPKCIESIVVSGFNPPPGPRKLAGDLTYLEVTLPDGAVLPITAHVAGFFVNKSSKTTFDPRPAA---AHHHLLLDVLSAASPAFAAQYAKLLATAEAWATAGASS-VEAMVQATS-GANSLV-----WTTPVATT---AHAFDANRAQDDLSVG--IDERGVIRDWNEEYQCARELPAATVREQIVRARVLYKIMTEFVEAATQGAMAIVDGT 425
[Close]
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A485L6B4_9STRA (Aste57867_16004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6B4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.210e-33
Identity = 88/209 (42.11%), Postives = 120/209 (57.42%), Query Frame = 3 
Query:  414 LIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQA--WKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAI 1034
            L  C+  I +S +NPPP  R++AGDL YLEVT  D  V H+T    GF++N +    FDPTPAA    H H L   L  ASP+F+  + + +  A  W  A +   + A+ +A     G  V + P WN  V D K   H  D  RAQDDLS G  +DERGV R+WN+EYQ   EL N++    + R+R L+K++ +F +AAT G +AI
Sbjct:  251 LPKCIESIVLSGFNPPPGPRKLAGDLCYLEVTLTDRKVFHITAHVAGFFINKSSGTKFDPTPAA---AHHHVLLDLLSEASPAFSTLYASLLSTAATWAAAGSTS-IDAMVQA-----GTHVGL-PSWNTAVVDAKATEHVFDANRAQDDLSAG--LDERGVIRDWNEEYQCARELPNESLRDQIVRARVLYKVMSEFVDAATQGAVAI 447
[Close]
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A3M6VMY7_9STRA (Clustered mitochondria protein homolog n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMY7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.710e-32
Identity = 88/221 (39.82%), Postives = 123/221 (55.66%), Query Frame = 3 
Query:  387 KGGEKDLEP-LIVCLRGIAISAWNPPPAQRRMAGDLLYLEVT-ALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQAWKRA-QADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAINE 1040
            K  E+ L+  L VC+  I  S +NPPP  R++AGDLLYLEV  A D T  H+T   +GFYVN +    FDP P   N+ H+H L   L   SP F +++   + +A   A +    +  +  A     G  +  K  WN   P +    HK D  RA+D+L   +GMDERGV R+WN+EYQ   EL  DT  + + R+R ++K++ +F EAAT G +AI E
Sbjct:  244 KDKEEQLDAKLPVCVESIVFSGYNPPPGPRKLAGDLLYLEVVVAGDNTRYHITAHVSGFYVNRSTATKFDPQPHKTNAAHAHLLVDLLSTVSPKFRESYAALLAKAASLAKEGPSSIEWMVAA-----GSNLGGKLPWN--TPSSAMVEHKYDLNRAEDELCASYGMDERGVLRDWNEEYQCCRELPTDTLKEEIVRARVMYKIVVEFVEAATQGAVAIVE 457
[Close]
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A1W0A9H0_9STRA (Eukaryotic translation initiation factor 3 subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9H0_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.190e-32
Identity = 89/213 (41.78%), Postives = 118/213 (55.40%), Query Frame = 3 
Query:  414 LIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQA--WKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAINEVT 1046
            L  C+  I +S +NPPP  R++AGDL YLEVT  DG+V  +T    GFY+N + K  F+P PA     H H+    LL AS +FA  +   +  A  W  A A   V A+ +A       +V     W  PV +     H  D  RAQDDLS G  +DERGV R+WN+EYQ   EL N T  + + RSR L+K++ +F EAAT G +AI + T
Sbjct:  229 LPKCVESIIVSGFNPPPGPRKLAGDLTYLEVTLTDGSVHQITAHVAGFYINKSTKTKFNPAPAG---AHHHQFVDVLLAASTTFAGLYEKLLSTAASWAAAGASS-VEAMVQASNNANQSLV-----WATPVSNGT---HNFDANRAQDDLSIG--IDERGVIRDWNEEYQCARELPNGTLREQIVRSRVLYKIMTEFVEAATQGAVAIVDGT 427
[Close]
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A5D6XWK4_9STRA (Clu domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWK4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.160e-32
Identity = 101/300 (33.67%), Postives = 142/300 (47.33%), Query Frame = 3 
Query:  207 PAADDMAQRVQRAMDIRGRLKDSRVPVGGQGLAGFY---GVGLGLAIDEVTMPPFKDTTDGVGKGGEKDLEP--------------LIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQAWKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWG-----HKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAINE 1040
            PA++   +++Q   DI  +L+   VPV  + LA FY   G    +A                 KG +   +P              L   ++ I  S +NPPP  R++AGDLLYLEV   DG V HVT    GF+VN +    FDP P    +  +H L   L  AS +F  A+   + +A + A+          A        V  K  W  P P T   G     H  D  RA+D+L+  +GMDERGV R+WN+EYQ   EL   T  + + R+R L+K++G+F +AAT G +AI E
Sbjct:  171 PASEISEKQLQMLRDIHAKLEGVTVPVLPE-LADFYTLPGASAVVAAAXXXXXXXXXXXXXGSKGKKSSEKPQPAGAVGAAAVDLKLPTVVKSIVFSGYNPPPGPRKLAGDLLYLEVAVADGAVFHVTAHVDGFFVNRSTAAAFDPLPRQPGAAPTHLLVDVLAAASDAFKSAYAALLAKAAQLAKQGPESLEWMLAAGSSSSATVGGKLPWLAPPPPTASTGAGAAAHTYDLNRAEDELTASFGMDERGVLRDWNEEYQCCRELPRATLKEQVVRARVLYKIVGEFVDAATQGAVAIVE 469
[Close]
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Match: A0A662WVJ9_9STRA (Clu domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVJ9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.120e-31
Identity = 86/211 (40.76%), Postives = 118/211 (55.92%), Query Frame = 3 
Query:  414 LIVCLRGIAISAWNPPPAQRRMAGDLLYLEVT-ALDGTVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAKAWNNAVIQAWKRA-QADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWWGHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRSRALWKLLGDFQEAATAGCLAINE 1040
            L  CL+ I  S +NPPP  R++AGDLLYLEVT A D T  HVT    GF+VN +    FDP P  + +CH+H L   L +ASP F  ++   + +A   A Q    +  +  A     G  +  K  WN P   T    H  D  RA+D+L   +GMDERGV R+WN+EYQ   EL   +  + + R+R ++K++ +F EAAT G +AI E
Sbjct:  249 LPSCLKSIVFSGYNPPPGPRKLAGDLLYLEVTIAGDNTRYHVTAHVNGFFVNRSTASKFDPRPHNSAACHAHLLVDVLSSASPKFKASFATLLSKAAALAKQGPSSIEWMVAA-----GSSLGGKLPWNTPA-STAADEHTYDLNRAEDELCASYGMDERGVLRDWNEEYQCCRELPVTSLKEELVRARVMYKIVTEFVEAATQGAVAIVE 453
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5496.12958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH17_9PHAE1.250e-11868.93Clu domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CKQ1_9STRA1.070e-4341.79Clustered mitochondria-domain-containing protein n... [more]
A0A4D9CWV2_9STRA2.300e-3741.67Clu domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A067CWV9_SAPPC2.060e-3545.07Clu domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9ZE05_9STRA2.180e-3344.13Eukaryotic translation initiation factor 3 subunit... [more]
A0A485L6B4_9STRA5.210e-3342.11Aste57867_16004 protein n=1 Tax=Aphanomyces stella... [more]
A0A3M6VMY7_9STRA1.710e-3239.82Clustered mitochondria protein homolog n=2 Tax=Per... [more]
A0A1W0A9H0_9STRA2.190e-3241.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A5D6XWK4_9STRA7.160e-3233.67Clu domain-containing protein n=1 Tax=Pythium bras... [more]
A0A662WVJ9_9STRA2.120e-3140.76Clu domain-containing protein (Fragment) n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5496contigH-paniculata_contig5496:1905..7442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.1
Seed ortholog evalue7.2e-105
Seed eggNOG ortholog2880.D7G8X4
KEGG koko:K03255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons7
Model size1929
Cds size873
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930571.5696225-UTR-H-paniculata_contig5496:1904..19501622930571.5696225-UTR-H-paniculata_contig5496:1904..1950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5496 1905..1950 +
1691481353.3747687-UTR-H-paniculata_contig5496:1904..19501691481353.3747687-UTR-H-paniculata_contig5496:1904..1950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5496 1905..1950 +
1622930571.5836072-UTR-H-paniculata_contig5496:1991..21661622930571.5836072-UTR-H-paniculata_contig5496:1991..2166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5496 1992..2166 +
1691481353.391931-UTR-H-paniculata_contig5496:1991..21661691481353.391931-UTR-H-paniculata_contig5496:1991..2166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5496 1992..2166 +
1622930571.682959-UTR-H-paniculata_contig5496:6607..74421622930571.682959-UTR-H-paniculata_contig5496:6607..7442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5496 6608..7442 +
1691481353.4543114-UTR-H-paniculata_contig5496:6607..74421691481353.4543114-UTR-H-paniculata_contig5496:6607..7442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5496 6608..7442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930571.6015115-CDS-H-paniculata_contig5496:2166..22411622930571.6015115-CDS-H-paniculata_contig5496:2166..2241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 2167..2241 +
1691481353.404182-CDS-H-paniculata_contig5496:2166..22411691481353.404182-CDS-H-paniculata_contig5496:2166..2241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 2167..2241 +
1622930571.6150897-CDS-H-paniculata_contig5496:3188..33951622930571.6150897-CDS-H-paniculata_contig5496:3188..3395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 3189..3395 +
1691481353.411702-CDS-H-paniculata_contig5496:3188..33951691481353.411702-CDS-H-paniculata_contig5496:3188..3395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 3189..3395 +
1622930571.6266954-CDS-H-paniculata_contig5496:3666..38341622930571.6266954-CDS-H-paniculata_contig5496:3666..3834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 3667..3834 +
1691481353.4198172-CDS-H-paniculata_contig5496:3666..38341691481353.4198172-CDS-H-paniculata_contig5496:3666..3834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 3667..3834 +
1622930571.637935-CDS-H-paniculata_contig5496:4674..48101622930571.637935-CDS-H-paniculata_contig5496:4674..4810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 4675..4810 +
1691481353.428489-CDS-H-paniculata_contig5496:4674..48101691481353.428489-CDS-H-paniculata_contig5496:4674..4810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 4675..4810 +
1622930571.6508844-CDS-H-paniculata_contig5496:5273..54221622930571.6508844-CDS-H-paniculata_contig5496:5273..5422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 5274..5422 +
1691481353.4367735-CDS-H-paniculata_contig5496:5273..54221691481353.4367735-CDS-H-paniculata_contig5496:5273..5422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 5274..5422 +
1622930571.666257-CDS-H-paniculata_contig5496:6469..66071622930571.666257-CDS-H-paniculata_contig5496:6469..6607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 6470..6607 +
1691481353.4455845-CDS-H-paniculata_contig5496:6469..66071691481353.4455845-CDS-H-paniculata_contig5496:6469..6607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5496 6470..6607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5496.12958.1prot_H-paniculata_contig5496.12958.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5496 2167..6607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5496.12958.1

>prot_H-paniculata_contig5496.12958.1 ID=prot_H-paniculata_contig5496.12958.1|Name=mRNA_H-paniculata_contig5496.12958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MAQRVQRAMDIRGRLKDSRVPVGGQGLAGFYGVGLGLAIDEVTMPPFKDT
TDGVGKGGEKDLEPLIVCLRGIAISAWNPPPAQRRMAGDLLYLEVTALDG
TVLHVTGTQTGFYVNGTRKENFDPTPAANNSCHSHELATCLLNASPSFAK
AWNNAVIQAWKRAQADDPVHALARAMQEGRGDVVMVKPQWNCPVPDTKWW
GHKPDPGRAQDDLSHGWGMDERGVPREWNDEYQSLLELSNDTPDQVMTRS
RALWKLLGDFQEAATAGCLAINEVTKQKKKRLGNRNGLGG*
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mRNA from alignment at H-paniculata_contig5496:1905..7442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5496.12958.1 ID=mRNA_H-paniculata_contig5496.12958.1|Name=mRNA_H-paniculata_contig5496.12958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5538bp|location=Sequence derived from alignment at H-paniculata_contig5496:1905..7442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAAAAGCAGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCACAGCTGCAGCTGCAGCTACGGCATCGCCTAGTGGCGCAGCAACG
ACGCCAACAACAGCTACAACGACAGCGCCAGCGGCAGCATCGACAAGCAA
GTCGGAGTTAACGCCAGCTGCGGCGGTACTCACAACGGCAGCGGCGGGAG
GCGAGGAAATTTCTCCTCAGGAAGCGGCGGCGGCGACTGGTGGTGATCCG
GCTGCTGACGACATGGCGCAGCGTGTGCAGCGCGCCATGGATATCAGGGG
GCGGCTAAAGGACAGCCGTGTTCCGGTCGGGGGGCAGGTGTGTTTGTGTT
TGTGTGTGTGTCTAGCGGCGGCTCACAAACATGTGGTGTTGACGGTTTTT
GCCGGCGTATCATATACTAAGTGGGGCTAAGATTTGAGGTTTTCTCGGCT
GGGTTATCCGATGGGACGGACCATAGACGAGAAAGTGTGCATGTTTGGTG
TATTTTTTGGAAGAAATGACGGCAAATAAGCATTCTTTGAATGTTGTTTT
TGATTATCGTTCATGAACCTAGACCGAAGGGTGAGGCGAGAAGTCAGAAG
TAAAATAAAGTGCCCCAAAATACTTACTATCAGCTATTTCAAGTTTTGAT
GTGCTCCCTGTTTTCTGCCTGTAGATGGTGTGGTGTGCCAACCACAACGG
CGTATTATGGTATATTTTCCGGCTGTTCTTGCTCGCGTTTTGTTTAAGCG
TCCCAAGGCATGGACCCATTGACTTCCTGGTGCAATATTGGGTGTGATGA
TAGCCCCCTTCACACGAGGCGTTTTTGATAGCAAGTGAATGAAAGATCGT
ATAGTGCAAAATTACAAGTAGTGACCTTTACGTTAAATTCGAGTTATGAA
TTCTGACGTAAATTTTACGGACAAAATGGAGCAATTAGTAACTCAATTCA
TTTATTGAAAAAATGCGACTGTATATTTTGCAGCTATCCATCGCATGAGA
AATCCAGGTGATGAAAGGCCCAAAGGAGGTAATTTTCGGAATGGTCGTCA
CTCTGATTTAGTCTCCGACATCCCCCCTTTCTTCATGGATCTAATTTTGC
TGACAAGTGTACAAAACCGAAGCTTGAAGTTTACTGTACAAGTGGTGGAG
CTGGTGCAGTTCACGAATGTGGCAGTTAATTTAACTCGCAAAATGAGAAT
TCCAGTGGGTCAAGAGGGTTTTATTCCAACACTCCCATCTCCCTCTCCTT
ACCCACCCACCTCCGTCACTGTCAAATTCATCAGGGCCTTGCAGGCTTCT
ACGGTGTTGGGCTAGGCCTAGCTATCGACGAAGTGACTATGCCACCTTTT
AAAGACACCACCGATGGGGTCGGCAAGGGTGGGGAGAAGGATCTCGAGCC
CCTCATCGTGTGCCTCCGAGGAATCGCCATTTCTGCCTGGAACCCGCCAC
CCGCGCAGAGGAGGATGGCCGGTGATCTCCTCTATCTCGAGGTGCTTGCC
ATTGCCGTCCCTGGCCGAGGGGCAAGGGACGGGGGGGGAAAGGGTTGTTT
AATGCACCAAAGTGAGGTTTCATGTGGAGTGGATTTGAACTTTTTCGCAC
CGATGAGTAATCATGGTGCCTTGTGGTCGGCAACTTGGCGGCAGTATGGC
GTGATGAGGACGCGGATGTGTTTGGGGCTGTACTAATAGCACTACAGATG
CACGCTGAAAAATGGGGGTGATGTTTTGTTTGTGCCTCTCACGCATGTTT
TGTGGCGTGCAGGTGACGGCGTTGGACGGAACGGTGCTCCACGTAACCGG
GACTCAAACCGGGTTCTATGTGAACGGTACACGCAAGGAAAACTTCGATC
CTACCCCAGCCGCTAATAATTCCTGTCACTCGCACGAGCTGGCTACCTGC
CTCCTTAACGCCAGCCCGAGTTTCGCTAAGGTAGGATACAGCAGCGGTCT
GATCGATGATAAGGAATGACGAGCTAAAGAAAATCGCAGTTGTCCTCGAA
GTATTTTAGTTTTTGGAATGTTTTACAAAAAAACAACAGCTGAGTGAAAG
ATAAGTTTTTCTAATATTTGAATTTCCGTGTTATTTTTTTCTTCAAAGTA
ATTGCCCTCAACTGATTTCCCGATAGTTACTTCCATATGTTTGAGGAAGT
CGAGATGGTGCGCTAGTATTGAAATGACGTTTTTCAGAAATTTAAAGTTG
GAAACTGAAATATTCGAAGCCGTGGTTTTTGAAGTTACTTGAGTTGAGAC
TTGACTTCCGAAGCGATCATCTAGTTAGCTTTTTATATTTTAATGGTGGG
ATATATACCCGTAGCGTTTGAGAGGGGCTTAATAGAAAGGGTTTTGAGCC
TCATTCAAAAATTTTCATCAAGTGAGTCTGACAGACCAGTCTACTGGAAC
GGCCGAAAAGTTCTGATGGAACCGCTGTGTAACCGTTTGTACTAATGTAT
CATGTCTGATGCAACTGCACCGCGAACCAGTTCTGATTTTGTAGTAGTAT
ACATGGCTTGTACACATGGGCACAACCAACACGAGAACCTACGAGTACCT
ATTTGGTTTTGTGTCGCACGGTTGTGTCTATTCCTGTTTCCATTTGACCC
AGTACTAGCTTGGCTTCTCTCGGACTATTGGAAGAGAGTGTTAATGTCCG
ACTTAATTGCTTGCCTTTCTGTTTTTTTTGTTTTTTTTTCTGTGTGGTTG
ATACTTTTTTTTAACGGCGTATTTTCTGTAACCTTTGTTTCTCTGTCTCT
TATATTGTTGATCACGCAAGGCTTGGAACAACGCCGTAATCCAGGCGTGG
AAACGAGCACAAGCAGACGACCCTGTCCACGCCCTGGCTCGAGCCATGCA
AGAGGGTAGGGGGGACGTGGTTATGGTGAAGCCTCAGTGGAACTGCCCCG
TACCAGGTATAACTATACCTAGCTCTATGCCGGATTCATCTCGGCTGGTC
AGGACTTTTTCCCGGGTGGCGGGAGGAGGCGAGGGGCAGGATGGTTTCGC
AATATTTGTCGTCAGCAAAAATATTCTCGACAAACAAAACACACGCCGAC
GTGCTCTTGTTCTGTCATCTGTGTGATCCAAATGCCGCACGGACAGCAAG
TTCTACAGTCTCCATGTTTGAGGGTTTTTTGTGAACACGTCGCGCATGCA
ATAGCATCCTCGTCGCTGTAGAGATCAGTTGCTGCGTGAAACGGAACAGC
GTTGGCTGCACGCCGAAGGGACTCCCAGAACGCTGCCATCTTACCAAGTA
AAATCGACAGAGTAAAATATCATGCGCTGTTTGTCCAATGGCGCATCAGC
TGCGGTATATTTTTTCTAATCTATTGTGTTTAATTCTGTAATATCTTGTG
TGTTATCTGTACGGTACAGATACGAAGTGGTGGGGACACAAACCCGACCC
GGGTCGGGCGCAGGACGACCTGTCTCATGGGTGGGGCATGGATGAGCGAG
GGGTGCCTCGGGAGTGGAACGACGAGTACCAGTCGCTACTTGAGCTGTCC
AACGACACACCAGATCAGGTCTCGAGTACAATGCAACTTATTTTTGTTTG
ATGTTTCTACCGTGCCCCCCCCCCCCTTTCCTATTTATGTAATTTTGCCC
ATGAGTCTTCACAACTGAAGTTAAAGCCAGTTACACAACCTCAATATGAC
TGCAATAGAGTTAGTACATGAGAGTCAGAGCTGTAGTCCCCCCCCCCGCC
TCCTCCTCTTAAATACTCCCTTAATTTCGTTTGTTTCAACCGACTGTCCT
ATTTATGGCGCCCCCGAGGCTATTTCGCAACGTGCATTGATACTCTTGAA
AAATGGTGTCGAGCAGTGTCGTCGATTTGGGCAAAATAACCAATTCCAGC
AATAACTAAATGTTTGTTGTCCACACTGAGCTTCCATCGTCTCTGAACAG
CGGCCGTTCCGTATCATCGTAAATCATGCTATGGAAATAATTTTCCCCAT
GTTTGGAGATGAGGATAAAAAAAAACTGTTTGAGGATTGGATCGGAACCG
GCGCAAGAAGTGTCAACATGTTAATGTATATCCACAAAACAGGATTCCTA
ACCTCGCTCCCTTGTGAAGGCGAGGGGCTGAGCTGTACAACCCTTTGAGA
TACATCTGTTGGCAACGTACAAAAGAGTGACTGGCTGTTCAAAATCGATA
GCTTTGATTAGGAACAGGAGCCCCGTCGTCGAGGCCGCGTGGTCAATCAT
GTAACAAGTACGGAATGCAAAACATGAGCATGTTTCTCGGATGGATCCGA
TCCGATCCGATCCGCGGAGACCTTGCGTAACGAGATCACCCCCCCGGACC
ATCCACGATTGCTGCTAATGCTCCTAAATCGAATGGACAGGGGTGGGTAT
TTGAGTTTTTGTGTCCGTTCATTCTGAAACTCAGGTGAATGGAAACAGTT
TTTGTTGTAAACCACTGGCAATTTTTCGTATTTGTTCGGGGGGTGATCGG
GATCCACGCGGCGATTTGATGGAATATGAAAAAATGTTGCTGCTCGTCTT
GTGATGGCTCTCTGACTATGCCTCTTTCTTGATATATATATTTTTTTCGT
GTGGTTCTTCGAAAGGTCATGACTCGATCTCGAGCGCTGTGGAAGCTGCT
CGGAGACTTTCAGGAGGCGGCTACTGCGGGCTGCCTGGCCATCAACGAGG
TAACGAAGCAGAAAAAGAAGAGGTTGGGTAATAGGAACGGTCTTGGCGGG
TAGCCTCGATGTCACTGGTACGGTTGAGGTAATGCGCCGTCAGATGCATG
TCACGGTCGGAGCTGTCGAATTTCTGCACTATAAATACTGAGGTCCTTGC
AGGAATCGTGACGATGTGGGGGGAACATATCTTAGTCGGTAAAAGCTGTC
GATGCTGCACTGTGTGGAGTCAGTTTTGGCGTCTGGTAGGGTATTTGAAG
GGTGTTTTTATCGATACCCCAATGTAGTATTATGAGAGTCGACTGTCCAC
CGGTGCAATCCTCGACACATGGACTGATTGCTCTCGCGGTTGGGGTCTGC
GTGGTAAACGACAGTGCTCATTGTGATCGCGTGAAATCAGTCGCCTCGGG
TGTTACTTGAGTTGATGATTATAAACTGGGGCTGACTGTTCTTCACTGTT
GCAAGGGTCCTTTGGCCAAGACTTTTCATTCTTCAGATTAAACGTTACCC
ATATTCTTTGTTTACATACTCGTGTGTATAATGGGTCGCTTCCGCGAAGC
GTGCTTCGAGTCGTAGACTGGATGGATTGTGACCCTAGCCGTCGTCATTC
ATAACGACAGCGATAGCATGGGATAGCCTTTGCTGTAGCAGCTGAAGTTT
GCCATTACTGCCCAGCGATGGGAACTTCAGCTTCTCCTACAAGGCTGCAG
TCCCACGGTTTCCATCCTGGCATCGTGTGTCTGTCTTGGTGTGGCTGCGT
CGGCGATGAAGTGTGATTTGTAAATGTTGTGACTGTTCATTTTTGCTCGT
CTAAGACGGTATAAGTGACGGCTGTGTGCTGCATGATGGGTGGTGATTAG
CTAACATCATGATCGTGGGACCCTACGCATGCATCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5496:1905..7442+

>mRNA_H-paniculata_contig5496.12958.1 ID=mRNA_H-paniculata_contig5496.12958.1|Name=mRNA_H-paniculata_contig5496.12958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig5496:1905..7442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCAGCGTGTGCAGCGCGCCATGGATATCAGGGGGCGGCTAAAGGA
CAGCCGTGTTCCGGTCGGGGGGCAGATGGCGCAGCGTGTGCAGCGCGCCA
TGGATATCAGGGGGCGGCTAAAGGACAGCCGTGTTCCGGTCGGGGGGCAG
GGCCTTGCAGGCTTCTACGGTGTTGGGCTAGGCCTAGCTATCGACGAAGT
GACTATGCCACCTTTTAAAGACACCACCGATGGGGTCGGCAAGGGTGGGG
AGAAGGATCTCGAGCCCCTCATCGTGTGCCTCCGAGGAATCGCCATTTCT
GCCTGGAACCCGCCACCCGCGCAGAGGAGGATGGCCGGTGATCTCCTCTA
TCTCGAGGGCCTTGCAGGCTTCTACGGTGTTGGGCTAGGCCTAGCTATCG
ACGAAGTGACTATGCCACCTTTTAAAGACACCACCGATGGGGTCGGCAAG
GGTGGGGAGAAGGATCTCGAGCCCCTCATCGTGTGCCTCCGAGGAATCGC
CATTTCTGCCTGGAACCCGCCACCCGCGCAGAGGAGGATGGCCGGTGATC
TCCTCTATCTCGAGGTGACGGCGTTGGACGGAACGGTGCTCCACGTAACC
GGGACTCAAACCGGGTTCTATGTGAACGGTACACGCAAGGAAAACTTCGA
TCCTACCCCAGCCGCTAATAATTCCTGTCACTCGCACGAGCTGGCTACCT
GCCTCCTTAACGCCAGCCCGAGTTTCGCTAAGGTGACGGCGTTGGACGGA
ACGGTGCTCCACGTAACCGGGACTCAAACCGGGTTCTATGTGAACGGTAC
ACGCAAGGAAAACTTCGATCCTACCCCAGCCGCTAATAATTCCTGTCACT
CGCACGAGCTGGCTACCTGCCTCCTTAACGCCAGCCCGAGTTTCGCTAAG
GCTTGGAACAACGCCGTAATCCAGGCGTGGAAACGAGCACAAGCAGACGA
CCCTGTCCACGCCCTGGCTCGAGCCATGCAAGAGGGTAGGGGGGACGTGG
TTATGGTGAAGCCTCAGTGGAACTGCCCCGTACCAGGCTTGGAACAACGC
CGTAATCCAGGCGTGGAAACGAGCACAAGCAGACGACCCTGTCCACGCCC
TGGCTCGAGCCATGCAAGAGGGTAGGGGGGACGTGGTTATGGTGAAGCCT
CAGTGGAACTGCCCCGTACCAGATACGAAGTGGTGGGGACACAAACCCGA
CCCGGGTCGGGCGCAGGACGACCTGTCTCATGGGTGGGGCATGGATGAGC
GAGGGGTGCCTCGGGAGTGGAACGACGAGTACCAGTCGCTACTTGAGCTG
TCCAACGACACACCAGATCAGATACGAAGTGGTGGGGACACAAACCCGAC
CCGGGTCGGGCGCAGGACGACCTGTCTCATGGGTGGGGCATGGATGAGCG
AGGGGTGCCTCGGGAGTGGAACGACGAGTACCAGTCGCTACTTGAGCTGT
CCAACGACACACCAGATCAGGTCATGACTCGATCTCGAGCGCTGTGGAAG
CTGCTCGGAGACTTTCAGGAGGCGGCTACTGCGGGCTGCCTGGCCATCAA
CGAGGTAACGAAGCAGAAAAAGAAGAGGTTGGGTAATAGGAACGGTCTTG
GCGGGTAGGTCATGACTCGATCTCGAGCGCTGTGGAAGCTGCTCGGAGAC
TTTCAGGAGGCGGCTACTGCGGGCTGCCTGGCCATCAACGAGGTAACGAA
GCAGAAAAAGAAGAGGTTGGGTAATAGGAACGGTCTTGGCGGGTAG
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