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Homology
BLAST of mRNA_H-paniculata_contig5485.12949.1 vs. uniprot
Match: D7FMF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF8_ECTSI) HSP 1 Score: 166 bits (420), Expect = 1.810e-44 Identity = 76/131 (58.02%), Postives = 99/131 (75.57%), Query Frame = 2
Query: 2 VISALYHPKCSYTDPLVSVRGHREVKAQFRGLRALLKRSKAEPISSHYVEQNRTLVIDCMLVFRPWYWFFSSFRIRNFIVVSLDDNGLIKSHTDHWSIASLIEAKVGWVYRAARRAFGVATSMIVGWVIKE 394
VIS YH +C + DP+VS RGHREVKAQFR LRA L+ SKAE +SSHY + TL +D +VF+P W FSSFR++ F VV + +GL++SHTDHWS+ASL+E K+GW+YRA RR FG TS++ GW+ K+
Sbjct: 35 VISEAYHRRCKFVDPIVSTRGHREVKAQFRSLRAFLRFSKAELVSSHYDVLSSTLTMDTTMVFKPKLWPFSSFRLKCFTVVVVGSDGLVRSHTDHWSVASLLETKIGWMYRAGRRLFGAVTSVLFGWLTKD 165
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-05_000890.1 |
| Exons | 4 |
| Model size | 1814 |
| Cds size | 300 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5485.12949.1 >prot_H-paniculata_contig5485.12949.1 ID=prot_H-paniculata_contig5485.12949.1|Name=mRNA_H-paniculata_contig5485.12949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MLVFRPWYWFFSSFRIRNFIVVSLDDNGLIKSHTDHWSIASLIEAKVGWV
YRAARRAFGVATSMIVGWVIKEKAANAPRAIACESKADTDSTNTRLKAS* back to topmRNA from alignment at H-paniculata_contig5485:274..9204+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5485.12949.1 ID=mRNA_H-paniculata_contig5485.12949.1|Name=mRNA_H-paniculata_contig5485.12949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8931bp|location=Sequence derived from alignment at H-paniculata_contig5485:274..9204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGATTTCGGCGCTCTATCACCCAAAATGCAGCTATACCGATCCACTCG
TATCTGTCAGGGGTCATCGAGAAGTGAAGGTGAGGATCGGAAAGGCAGTG
ACTGCACCGCTTTACTTTCTCTGTGCAGTAAGTAACTACCGTTATAATTA
TAGAGAAGCTTGAACATGTACGTTTTTCCTTTTGGGGGGGGAGAGGTGGT
CTGTCCCTGACGGTGAACGAGGAAAAGTTACCCTTGGAATTGATGTTGTA
GCGGTGGGTACATGGACTTTAGGGTTGAATACATAATTTCGTGGACACTG
GTGAAATCCACCACATGCGTGCACGGCGCCAATTTTTAAAGTTGACCGAG
AAAGGGCCATACCTTACCCCTTCTGGTATTTTTCGAATGGAAAAACATGA
AAATCGGATCTTATAGTTGTTGCAAAAGTGCTCCAAATAAGCTCAACATA
GAATAAACAATTAATCCTGATGCACACATTAGAACATACTTCAGAATAGC
TCATATAAAAATCTCATCTGATACTGTACTGTGACGATCTTTGGAATCCA
TCTGATTTCGGCTTTCCGTTAGTGCGAGCAACACTCTCCACCTGAGTCCC
CGTAGAGGGTGCGATACGATCCGTTAAATATAACTTCCTTCGTTTGTGGC
ACAGGGGAAGTAGTACAATTCGCACATGCCGGAGGTATTACACCGGAGTG
CTAAAGCTTTTCAAAAATGAGGCATCGTCGATGTATACGAGCGAGCTCAA
AAAAGATTGAATTGACCGTCGGGTAGGGACCCTTCTGGCTTCCTGTCAAG
GTCAGCAATAATTGTATTTCAAATGTAGGGTCCCAGACGCGCGAGATGAC
ATACAACCAGGGGAAAATGTACCACGAACAGTTCAGCGCATGCACGAGTA
CGGCTCAACCAACCATTGGGCCGATTCTAGAGTCTACGAAACCATGGACA
TCAACCCAAGAGGCAAAGTAAACGTTTCGGTCTCCCTCACTCTGATCAGA
ACGTCCGACATGCTCGAGTCACGTGAACGCTCTCATGCTTCAACTACCCG
CGAGTGCCTCCGTGAAAGACTTGGGGTACGAAACGTTGTCGTGCCCCTTG
ATCGCACAGCTGTCGATACGTTACGACAGCCTTTGGGTGTGGCTCATGTT
TTTTCCGTTGAATGGACAGGGGAGGACATAGCACTTGAATATGACTGGAT
GGATGTCGTAGTGACTGTGCCCTAAGCAAAAACAATAACACCATAGAGCT
AGTCGAATTAATCATTGGCTGGGTTGGCGAGAGGTAATATGTGTTTTGGC
GCAGAGTGGCGTTTTGCTCAAACCCATGGACATAGTTTTTCTTTTCGAAT
ATTGCGTCGTACATACAACTGTTTTTATTCGAATGACGGGGCAAAATGTG
TGTGTGTGTGTGTGTGCGCGCGTGTTTTTGTGTGCTTTTTTTTTCGCCAG
GCGCAGTTTCGAGGACTGCGGGCACTGCTGAAGAGGTCCAAGGCGGAGCC
TATCTCGAGTCACTACGTCGAGCAAAATAGGTGCTGTGTGTGGTAACGAA
GTGAACAAGGAAAAATTGGTTGATGACACATTGAAACATAGATATGTTAA
ATAAAACGTCAAATACGCCGCAAAAGTCAACGCCTGTTAACTTTGTATTG
GTTTCTGCCAGTCATTCAAATATGTTATATATATATATATATATATATAT
ATATATGTATAATAATTCATTATTTATGGGTTGGGGAGATTGCTCGTTTA
TTCTCGGTTGATAGATACGAAATTATTAGTGGATTTTTTTGCGGGGGGTA
GGAGGACAAATTACTACTTGTTGACGTGGATGGCGGAGTAAACGCTTGGC
TACGACTGGCTAGTACACTATCCCGAACTATTGAACCCTGCCACAATCAG
CCTCTTGGTCGACCGGCTGCTGTAATAGTAGCGGTACAGTCATGGCTACC
CCCGCGCAGTCAATCCGTGTTCATTTCCCACTGCTCGTTTCTTTCAGGCG
AGGTTTGTGTGGAGAATGACGCGCTGCGGGTCAAGTAATATAAGCAATCA
ACCCGCCATGTGTAAATATTTGACCCGCAGCACGCCATGCTCTACTTTTT
CTTGGGATCGTCAACATCACCACCGTTAGTGCTAATTTGTGCTCTACCGA
GTACGTACGTGATTATGTCACAGGCATCGTTTTCTCCTATTTTGGGGGGA
AGGCACCTAGAATTTAGGTGGGAACTGGAGCTAGGAGCTGTAAAAAAAAA
AAAAAAAGTGAGTGTGCACAAAAAAAAGTAATGGTCGTTTGAAAGATATG
ATGACGAAGCGTTAACTTCCTGCGCTGTTGCATTAAGTTCTTGTGTCTTT
TTGCTCTGTGCCTGCGATATGTTTGTTCCCCTTCTGAATGCTATTTGACT
GCGGGCAAAACAGAACGCTGGTTATTGACTGCATGTTGGTGTTCAGGCCG
TGGTACTGGTTCTTCTCTTCCTTCCGCATCAGGTGAAAACGATTTATAAC
TTGGATTTTATATGGGGGGGGCGGGGGGGGGCACCCACCTTTGCTGGACC
TCGTTCATCCAATATGTGAGATAAGGGTATCTACTGGTGGGGTTCGGTGT
AGTAATCTTAGTTATATTATACATTAAAACAACCTCTTCCAGGGTATACT
ATTAATAATGCCACCATTGAAAAGATTTTATAAGCCATGAGCACAGGTAG
CTCGCTTAGTGCAGAGTGTGACTGTCCAATCGTTGCTCGTTAGTATTTTT
CGTGTGGAGATTTTTTTTTTATAATCGTAGCAGTCAATAGGACTGACTGA
CAGCTGGTGACTGCACAAAACCTTGGTTGAGCTGTCGCATGCAGTACTGT
GTTTTTGGTATTTGTCCACTTCACTGCGTGAACCTTTGCATATTACCTAC
CCCATGTTTTTACTCTGGGAAACAGATATCACGGTAATGAAGGAGATCTT
CCCTGAACTATGTTAGTACCTTACTACGTACGAGGAATAGCCTACCTGTG
CGACACCAAATTTCGGTACTGTCTTCATGTACTATTATGTCCCTCATGTA
TATTATATGAAAATGCACGTGGATGTATACAACCATATGCATATGTCGTT
TTGTCTGGTGATTGAATCCTTCAATAAAAAGGAGCAATCCATTGGTACTG
AATGCTATATTATAATCTTCAATGATAGGTGCCAGCCTTCATGCACCATC
CTCGGATTTGAAGCAGCTGTTCAGTGAAGGTGCTGAACAACCCCCAGACA
AATACGAAGCGTATGTACTCTATGAGCCCCTGGATCATCCACGACTGCTA
ATGCTACTCGTAAATCGAATGGACAGATAGCGGGTGGGTTCTTCATTATA
TGTTTCTGCTCCTGAAATTCAGGCGAATTCTTCTGTTTTTTTTTTTCTTA
TCGGATACAGCAATTATTCCTATTTATCCGGGGGTTGGAGCTTAAGGTGC
CAATGTTCATGCACGTCACGTTCACCAGATTTAAAGGAGGAGCGTTCCGA
TGAAGGGGATCGGAATGTTTTAAATCCACATGTACCTTGATCGGATTTGA
AGGAATGGCTCAAAGAGGAGGAGGCTAACCTTCATGCGCCTTGACCGATG
TTTAGGATTCGTAAGTAGCTGACCTTTATATATCGTATCTATTATTTTGT
TTCGAAAATAAGGTGACGGTTCATAATTTCATCCTCGAATCTCAATTCGG
ACGTTTATCACAATGCGGATGAAGACGAATGACAGCACAGCACCGTAATC
GGACCGCTCCTTCACCCGAGGTGTGGCCGTTTTCACTAACGCACCTAACC
CTGTTTAACTCCTTCGGGACGCAGCCCTCTGAGATCTGCTTCCTGAGATT
TTGTTTTTGAGATCTTTTTTGTTTTACAATACGAAATAAGTTGTATCAGA
CCCAGGGACGCGATCCATCGGAGATGTATTTTCTGGCACCCGGATTTGCA
TTTGGGCACTTTTTCGGTACGCTCCAAAAATAGCTGATTTTCAACACGAG
TCAGAAGTATAGTTTTGTCGACGTTCCGAAAAGTACCTCGCCTCGAAGGA
ATTACGAACGCGCTCCCCTTGGAGAACGCACCGGGTGCGAAGTGCATGGA
CGACCTGAATTTAGGGTAACCACGAACCACATCCAGTTACCGTTTAATAC
ACCATGTTTGCCTCTCGGTTAGGCTTTCAAATTTTTAGTCTATCCGGTGG
TACAAAGTACAGAATACTGAATTCTTTATTTTTATGATGTTGCTGTTGGA
GGAGTCCCTACGAAGTAAATCCTTCAGAGCCCTGTTTTAGGAATCGGATT
TCGCAATGGCCAAAACATGGACATGCAACCAAGCAGTTGTGAGCACTGAC
GAATACGTTGACAGAATGCTCCACCAGCTCTAGACAACTGGTTATTCTTG
TGCATCTCAGGTGCAATAGGGGGTCGTAATTTGGCGGTTTGGAGGGGCTT
TTATCTCGCAACTATTCGGAGTAGAGGGAGAAGGGGCAAACGCTGCCCTT
TTTCGCAAGTGCCAAATACCGAACGAGCACTCTACAACTGAGTAGTGGAT
CAAAGGATCCTGCCGTAGGTTACAGAATATAATCCCCCCCCCCGGTGATG
CCGTTATCAGAGCCAAAATGTCATTACCATGGATGGTAGTCGGGGGGGGG
TGGTATCCCCCGTATCTCCGGTGATACGGTTAGCGTGCCTTGCGATTTGG
GGGCGCTATCACCACCCTACCGTGGTAGGGGGAGGTACTCTTTGATTGTG
ACTTATGATTGTACTCCCTCCGTCCCGTAAGTCTGCGACGTTAAGGGTAT
AATTTGTTGCAATGACCTCAAAATCAAAAACGGATTTTTGCGTCGAATTC
CTTGGCGTTTTTCGCGTTAATTTATTCTTCGCAGTCTTCGTCGTTCCCAT
CAATCCACCACTCTGCCGCCGCGTGGAAAACCTCTCGGTCGCTTTTGACC
GAATTTTGCAGACTTCCCGCACGCTGCGTTTTCTTGGTTTGGGTGTGCTT
TACCTCGAAATCGTTACCTCCTAGCGCCTTCAAGACCTGGTTGTACCGCT
TAAAGAGGCTCTGCCATACCCTCTCTAATTTTGCCGCGTCGTATGCGTCG
TACATGCTCTTTACCCCCTCCACAAGACCGTCTATCGTACCGTAACGCTC
CCTCCAGACCCTACTTTTCAGAGATGCAAAGAACCTCAAATCATTGATGT
TGAAATCTGGGACTGCGCAGGCTGAGTTACGAGATTGCCGTTCCACCCCC
CGTCCCTCCCGAATTCGGCATGTCTTTCCCCGTGCGGCGGTCGCTCCGTC
CTGCTGCGCGACCACTTCTTCACCCTCCAACCATGACATCTATTCGTTCA
ATGCTGGGAGAAAAGAGTCCTTGTACTACTCCTGGTATCACTCTGCGTCA
GTGGTCATGTTGAACTCGTATTGTTTCCCTCGTTCACTCTGGGCCGAATT
CCTCTGCGCCTGCTTGACGACGCAAACACGTCAGATTCCAATCTTGCCGT
CAAAATCGCGGGAAGGATCTGGACCCGAAATGGCGCGGATGAATATCACC
ATAAGATTATGACTCTTGTGCTGTACCTTGGTGGACCCCACCCTTTCCTC
CCCGGGGAACATGCGGACGCGATCCCTGTCGCGAATTAGGTAAAACCACG
CTTTGTCGATGTAAATTGTTTGGAAGCCGCTCCTGAAAATGATGCGGTTC
CTTGGTGCGTGATCCAGGATGAAGTCTAACCGGTTTTTTCGGTGCGTCAG
TGACAAAGATGGGGTAATGCGCCGTTTCGCCCTCGTGGCACCCATCTCTT
TGAGTCATCGCTGAAGCTTTGAGCTGCCGGCTATGAGACCAACTTCGGTT
AGCTTGGCAGACAGTTGATCTAGGGTCAGGGTTCGATTCGCGGCGTTGAC
CCTTCGAATCGTGGCGTGCTTTGTCGGTGTCAAGTCCGACGGCCACCCGC
TTCGTGACGCTGACCTCAGCGAAAGGGTGTATCAGGGTTAATCGTTATGG
CACCGTGCCGTGTTCCCTCCCTACATAATCCCCGCTAGGAAAATAGACCA
AAACCCCTTCGGAATATGTTTGTGATGAATGCCCATAACATGATTACGGG
GATTGAAAGGTCTACAGACAGCAAGGACGGTCCTGTCATTATTATTGCAG
ATATATCCACAGGAATTTCAGGAGTTGGCATAGTTTTGAGTTCCACGAAA
GCAGCACATGATTGAAACGCAAAGCACATTGAAACGCAAAGCACAAATCA
CATCATGAGTGTCTGACTGTAAAGGGTTTGTGTGCCGCACAGAGCCGCAC
GCCAGGACATTCAATCAAAACACATTACGGTAGCTCTCGCGGCACTCACA
GACAGTACAGACATTGCAGACAGCCGAATGCAGAAAGATTCGTCGCACAA
CTACCTACGCATGTGTCGTTGTTGAAGCACCGTCCACAGCCATGGTGGCA
AGGTACCCTGGCATACTATGTACTGCCATCGCTCTCTTGCTTGCTGTCGA
TACTACGCGTCTGTTGCGCCCACGAGAGACAACCAGACGAGAAAGACGCC
GCCCAAAACAAACATAGCACAAGAACGAAACGACGAAGAGTGCACGTGTT
GCTCATATTAACAGCCCGATCCTGGAACATGTAACTTTTGTTAACATGTG
ATACGCAAGAAACCAGGGGGCGGGAAATAATGCTTCTACTCAATAGCTGT
GGAGCGCACCTGCTTTCGATTGAATCGGACAGGACAATCTCGAGATTACA
CTAAACGAAAAAAACAGGGAAAAAATCGTTACCGGTTATATTTATTCATA
TTTTTCCCATATATCGTCAGCCAATGGCTCCATTAAAAAACGGACAACGG
CCCGTGAACGCTGACATCATGCACTTTCGCGTAGTCTTGGACCGTTTAGC
ATAATTCAGCAATCGTTGTGGGGGAAACTACCAAAAACCGTTTCATCCTC
AGTAAAGGATCGATCCTCAATTTCGATAATCGGCTATTAACCCCCTCAAC
CGCTCGAGGAATTGTGTAGAGACCTTGTCTCTCCAAAAAAACTCAAGTAA
TGTATGGGAAACGAAACGTTTTTGATTGGCCGCTAGAGCAACAAACAGGC
ATGATTGGCCTGACCCTATGTCGTTCGTATGTAATCTACTGACATGCTTT
CGCGGCAGCTTCGCCGCAGGACTGTGAGGTGCTCTGTCCCCCAGAGAAAA
GACACAAACAAAAAGATGTTTTTCGAATAAATTTCACATATCATCATTTT
TTTTTCCGGTAGTTCCTCCCCTCTCCCCTCTCCTCACTCCTCTTTCTCTC
TCTCTCTCTCTGATATCCACTGTGCACGCATTATCAATGTTGCAGGAATT
TCATCGTGGTCAGTCTCGACGACAATGGGCTGATCAAATCGCACACCGAC
CACTGGTCGATCGCATCTCTAATCGAGGCTAAGGTCGGGTGGGTCTACCG
TGCAGCCCGACGGGCCTTTGGCGTGGCGACATCGATGATCGTCGGGTGGG
TCATCAAGGAAAAGGCCGCCAACGCACCGAGGGCAATTGCTTGCGAATCG
AAAGCGGATACCGATTCCACCAATACCAGGCTGAAGGCATCCTAATATGT
AGGATAACATCCTGGGGGCGTGAGCAGGGAGGCAGGCCCTAACCAATTCC
TTGAAACGGCAGTACCGTAATAATGATAGCTTCTGCTATCGCAGCGGGGT
GTGTGTGCGTTTTTCAGACGCGATCTATCATCTGGAGGATAGAGACCTTT
AAGGCGGTTCAGTGATGAAAGTCCTTTTTGTTGCTGCTGTTTTTAGACTG
AAAGAAGAACAGTGACTGATTAGCGCTTATCGTGCACCCTGAAGGGGCTA
AGGGGGGGTATAGGTCGCACCACCTGATACGGAAACCGCACGTGGACTAA
CTCACGTAATATCCTTTGATATCGCACCCTCTTATATCTATTTTTCAAAG
TCGATTTTCTCGACAACGACAATGCTCATGACACCGATAACAGTATCGTT
AGATGCTTCGAATTTGTCTTCTGTTTCGGTGGTCTAGGTTCTTGCTTCTC
TTGAGAATGTCGGGCTTCGCAATATAAAAGGGTGTTGCGGTTTGCCGTGA
ACTGTTCCGAAATCGTGTGCGGTTCTCTGCGGTGTGGTACGGCATAGGAC
AGCATAAAGGTATATGCTTAGACACGTGAAAATATGCCGTGAGGTTGGTT
ATCTTTCGAATCGCAGCCGCGTAAATACTGCAGTCAAGCTGTCGATGGGG
GTGAAGAGAGGCTGGTCTCTGACACTAATGCTGTGACGCAGGAGTGGGGT
CACTTTTAGAGCATGCCACTTACCCAAGAGTGGCTGCCTCAATACCCTAA
CCGCGGTAACTAAGCACTGAGGAATTGTGTCTGTATGTATGTGCGTATTT
GTATCTTCTTTTTTTTCTGTTTCTTGTCGCCGGTGATTTTTATTCTGTGT
CTAGTGGCTACATCGCCCTCTCTGCTTGCTTTCATGAAAAATCAATCGCC
TTTCAACCCCCCCCCCCAAAAGGGTGCGTGCGTTGTCGGAGGGAAATGGT
GAATTGAATAGCAGCCCATATATCAGGACGAGGAGAGAGCTGAACTAGTT
TCATGAACAAAAAACGGATGCATGTGTGTTACATGCACGAGAAAGGTCTC
CGCCATAAATTCTCGAAATTTCTCCAAGAAACAGTTTACAGGGGAGGTCG
GCTGTTTCTCAGCGTAAGACCTACATAGATGGTGGTGGGGGGGGAAGCGG
AAAGCGGGGAGAGGGGAACTGAAAATTTCTTTCGTAAGTTAATCCTATCT
CGGTTGATTGGGCTTAACCCTGAAGCTCGTATATAATGTTCATTGTATCC
ATGCAGATGACTTTATTATCCAAGAAAGCCCCAAAAAAAACACGGGAGAA
AGTTTACATATTGAGTCGACTGAGTTTGGAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig5485:274..9204+ >mRNA_H-paniculata_contig5485.12949.1 ID=mRNA_H-paniculata_contig5485.12949.1|Name=mRNA_H-paniculata_contig5485.12949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig5485:274..9204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTGTTCAGGCCGTGGTACTGGTTCTTCTCTTCCTTCCGCATCAG
ATGTTGGTGTTCAGGCCGTGGTACTGGTTCTTCTCTTCCTTCCGCATCAG
GAATTTCATCGTGGTCAGTCTCGACGACAATGGGCTGATCAAATCGCACA
CCGACCACTGGTCGATCGCATCTCTAATCGAGGCTAAGGTCGGGTGGGTC
TACCGTGCAGCCCGACGGGCCTTTGGCGTGGCGACATCGATGATCGTCGG
GTGGGTCATCAAGGAAAAGGCCGCCAACGCACCGAGGGCAATTGCTTGCG
AATCGAAAGCGGATACCGATTCCACCAATACCAGGCTGAAGGCATCCTAA
GAATTTCATCGTGGTCAGTCTCGACGACAATGGGCTGATCAAATCGCACA
CCGACCACTGGTCGATCGCATCTCTAATCGAGGCTAAGGTCGGGTGGGTC
TACCGTGCAGCCCGACGGGCCTTTGGCGTGGCGACATCGATGATCGTCGG
GTGGGTCATCAAGGAAAAGGCCGCCAACGCACCGAGGGCAATTGCTTGCG
AATCGAAAGCGGATACCGATTCCACCAATACCAGGCTGAAGGCATCCTAA back to top
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