mRNA_H-paniculata_contig5483.12948.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5483.12948.1
Unique NamemRNA_H-paniculata_contig5483.12948.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: D8LHB4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.780e-26
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 QGTIILCVALGTIPVVGGAVTLLAGPGLLLAGLLVMFAGATGLGDSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            QG I++ VA+G+IPVVGG V  LAGPGLL  GL V+ AG  GLG SLSPWPAPVKDNEL T GIYGV+RHP+Y+G
Sbjct:  264 QGAILIFVAMGSIPVVGGLVMALAGPGLLAGGLGVIAAGVNGLGKSLSPWPAPVKDNELNTDGIYGVMRHPMYTG 338          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: A0A6H5K0K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.380e-26
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 QGTIILCVALGTIPVVGGAVTLLAGPGLLLAGLLVMFAGATGLGDSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            QG I++ VA+G+IPVVGG V  LAGPGLL  GL V+ AG  GLG SLSPWPAP+KDNEL T GIYGV+RHP+Y+G
Sbjct:  313 QGAILIFVAMGSIPVVGGLVMALAGPGLLAGGLGVIAAGVNGLGKSLSPWPAPIKDNELNTDGIYGVMRHPMYTG 387          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: A0A7S0ATK5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATK5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.520e-16
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 QGTIILCVALGTIPVVGGAVTLLAGPGLLLAGLLVMFAGATGLGDSLSPWPAPVKDN----ELTTTGIYGVIRHPLYSG 225
            Q +++L +ALGT+P VG A++   GPGL+  GL++++  A  LG +LSPWP P   N     L  TG+Y ++RHP+YSG
Sbjct:    3 QFSLLLFIALGTVPFVGDALSFTLGPGLVGVGLVIVYKAAVDLGTNLSPWPTPADPNTGRGSLVDTGVYSLMRHPMYSG 81          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: B8LBH8_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBH8_THAPS)

HSP 1 Score: 72.0 bits (175), Expect = 3.410e-14
Identity = 30/75 (40.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 QGTIILCVALGTIPVVGGAVTLLAGPGLLLAGLLVMFAGATGLGDSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            Q +++L +A+G +P +G A+T   GP ++L GL +++  A+ L ++LSP+P P +   L  +GIYG++RHP+Y+G
Sbjct:   11 QFSLLLFIAIGDVPFIGDAITTFLGPSMILLGLFIVYKSASDLKNNLSPYPVPSEKGALIDSGIYGLMRHPMYTG 85          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: A0A7S4A6W4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6W4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.380e-13
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 QGTIILCVALGTIPVVGGAVTLLAGPGLLLAGLLVMFAGATGLG-DSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            Q  ++L + +G +PVVGGA+  L GPGL++AG+  +  G   LG  +L+P+ APV+ NEL TTG +  +RHP+Y G
Sbjct:  103 QAALLLLLLVGDVPVVGGAIETLLGPGLVVAGIGAIAKGVLDLGAGNLTPFAAPVEGNELKTTGAFSYVRHPIYGG 178          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: A0A6U9R4H7_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9R4H7_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 5.980e-10
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   76 PGLLLAGLLVMFAGATGLGDSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            P L+ +GLLV+ AG + LG +LSP+P P K N+L T GIYG+IRHP+Y+G
Sbjct:  158 PLLIPSGLLVIAAGQSVLGGNLSPFPEPSKTNQLVTGGIYGMIRHPMYTG 207          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: A0A0P9CYA1_9CHLR (Uncharacterized protein n=1 Tax=Kouleothrix aurantiaca TaxID=186479 RepID=A0A0P9CYA1_9CHLR)

HSP 1 Score: 60.8 bits (146), Expect = 7.800e-10
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   88 LAGLLVMFAGATGLGDSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            LAG  V  AGA  LG +L+P+P P+ D EL  TGIYGV+RHP+Y+G
Sbjct:   54 LAGGGVAVAGARALGRNLTPFPRPIADGELVETGIYGVVRHPIYTG 99          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: A0A3D8YAI1_9BACT (Isoprenylcysteine carboxylmethyltransferase family protein n=1 Tax=Dyadobacter luteus TaxID=2259619 RepID=A0A3D8YAI1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.330e-9
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   70 AGPGLLLAGLLVMFAGATGLGDSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            AG  L LAGLLV+ A    L  SL+P+P+PVK+ EL T+G+Y  IRHP+YSG
Sbjct:   38 AGAILALAGLLVILAAVYQLRRSLTPFPSPVKNGELITSGLYRYIRHPIYSG 89          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: A0A1X6NWT9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWT9_PORUM)

HSP 1 Score: 61.6 bits (148), Expect = 1.970e-9
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   58 VTLLAGPGLLLAGLLVMFAGATGLG-DSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            V+ + GP +L++G ++   GA  LG   +S WPAPV D  L T GIYGVIRHPLYSG
Sbjct:  188 VSFIVGPVVLISGAILSVKGAWDLGRKQISLWPAPVPDGTLKTKGIYGVIRHPLYSG 244          
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Match: U5QGB8_9CYAN (Protein-S-isoprenylcysteine methyltransferase n=2 Tax=Gloeobacter TaxID=33071 RepID=U5QGB8_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 2.180e-9
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   52 GAVTLLAGPGLLLAGLLVMFAGATGLGDSLSPWPAPVKDNELTTTGIYGVIRHPLYSG 225
            GA+  L G  L   G LV+    +GLG +LSP+P PV D +L T+G+Y ++RHPLY+G
Sbjct:   39 GALWTLLGGLLTALGSLVLLLAVSGLGRNLSPFPRPVPDGQLVTSGLYALVRHPLYTG 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5483.12948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHB4_ECTSI1.780e-2670.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0K2_9PHAE6.380e-2669.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0ATK5_9STRA8.520e-1645.57Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B8LBH8_THAPS3.410e-1440.00Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7S4A6W4_9STRA2.380e-1346.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U9R4H7_9CHLO5.980e-1058.00Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A0P9CYA1_9CHLR7.800e-1058.70Uncharacterized protein n=1 Tax=Kouleothrix aurant... [more]
A0A3D8YAI1_9BACT1.330e-957.69Isoprenylcysteine carboxylmethyltransferase family... [more]
A0A1X6NWT9_PORUM1.970e-954.39Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
U5QGB8_9CYAN2.180e-948.28Protein-S-isoprenylcysteine methyltransferase n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5483contigH-paniculata_contig5483:8450..8674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog35128.Thaps36679
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Isoprenylcysteine carboxyl methyltransferase (ICMT) family
EggNOG OGs2CV5T@1,2RRCD@2759,2XDHS@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930569.8396413-CDS-H-paniculata_contig5483:8449..86741622930569.8396413-CDS-H-paniculata_contig5483:8449..8674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5483 8450..8674 -
1691481352.6782198-CDS-H-paniculata_contig5483:8449..86741691481352.6782198-CDS-H-paniculata_contig5483:8449..8674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5483 8450..8674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5483.12948.1prot_H-paniculata_contig5483.12948.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5483 8450..8674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5483.12948.1

>prot_H-paniculata_contig5483.12948.1 ID=prot_H-paniculata_contig5483.12948.1|Name=mRNA_H-paniculata_contig5483.12948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
QGTIILCVALGTIPVVGGAVTLLAGPGLLLAGLLVMFAGATGLGDSLSPW
PAPVKDNELTTTGIYGVIRHPLYSG
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mRNA from alignment at H-paniculata_contig5483:8450..8674-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5483.12948.1 ID=mRNA_H-paniculata_contig5483.12948.1|Name=mRNA_H-paniculata_contig5483.12948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig5483:8450..8674- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGACTATTATTTTATGCGTGGCGCTCGGCACTATTCCGGTGGTGGG CGGGGCAGTTACGCTCCTGGCGGGACCGGGGCTACTGTTGGCAGGTCTTT TGGTGATGTTTGCAGGCGCGACTGGTTTGGGAGATAGTTTGTCGCCGTGG CCCGCCCCGGTTAAAGACAACGAACTCACCACTACGGGGATATACGGAGT CATAAGACATCCACTGTACAGCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5483:8450..8674-

>mRNA_H-paniculata_contig5483.12948.1 ID=mRNA_H-paniculata_contig5483.12948.1|Name=mRNA_H-paniculata_contig5483.12948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig5483:8450..8674- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGACTATTATTTTATGCGTGGCGCTCGGCACTATTCCGGTGGTGGG
CGGGGCAGTTACGCTCCTGGCGGGACCGGGGCTACTGTTGGCAGGTCTTT
TGGTGATGTTTGCAGGCGCGACTGGTTTGGGAGATAGTTTGTCGCCGTGG
CCCGCCCCGGTTAAAGACAACGAACTCACCACTACGGGGATATACGGAGT
CATAAGACATCCACTGTACAGCGGTCAGGGGACTATTATTTTATGCGTGG
CGCTCGGCACTATTCCGGTGGTGGGCGGGGCAGTTACGCTCCTGGCGGGA
CCGGGGCTACTGTTGGCAGGTCTTTTGGTGATGTTTGCAGGCGCGACTGG
TTTGGGAGATAGTTTGTCGCCGTGGCCCGCCCCGGTTAAAGACAACGAAC
TCACCACTACGGGGATATACGGAGTCATAAGACATCCACTGTACAGCGGT
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