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Homology
BLAST of mRNA_H-paniculata_contig5482.12947.1 vs. uniprot
Match: D8LTN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN6_ECTSI) HSP 1 Score: 109 bits (273), Expect = 8.360e-23 Identity = 92/146 (63.01%), Postives = 106/146 (72.60%), Query Frame = 2
Query: 329 PPVGVVVGAGAAGALAGHLVFHSLLISVGLGVGAMGVAASADGNAGEIARSSGRMALAAFERTKEVNERYHLTERLAEGIQSAARGFREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKAGNAVSDGLDKLAKVLEPPKPSS 766
PP+ VVGAGA G LAG LVF SLLIS GLGV AM +AAS+ AG+IARSSGRMA+AAF+R ++NERYH TERL G + ++F XXXXXXXXXXXXXXXXXXXXXX AG A++ GLDKLA+ L PP PSS
Sbjct: 55 PPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAGDIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAVVHXXXXXXXXXXXXXXXXXXXXXXXXXAGEAMTSGLDKLAEALTPP-PSS 199
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-28_003410.1 |
| Exons | 6 |
| Model size | 1670 |
| Cds size | 903 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5482.12947.1 >prot_H-paniculata_contig5482.12947.1 ID=prot_H-paniculata_contig5482.12947.1|Name=mRNA_H-paniculata_contig5482.12947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
MHGLQPSPPLMPPAPSLVAAAVSDGLAMYCPGVFIRGGSTYDYSQPPTTN
SPPVDHGGYPPVGVVVGAGAAGALAGHLVFHSLLISVGLGVGAMGVAASA
DGNAGEIARSSGRMALAAFERTKEVNERYHLTERLAEGIQSAARGFREFD
EEHAVVHNATEGVKQAWRDLRQFDEEHQLTTKAGNAVSDGLDKLAKVLEP
PKPSSSSNRARDGRMTGGVYTSIGEHSRSRSGGGGIENENSNQQQPRQQQ
QQHHGPRSRVEDQQTTQQQPSQSSVPPWGRVDGDADEVRDWWGEDPGWRQ
* back to topmRNA from alignment at H-paniculata_contig5482:772..7867+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5482.12947.1 ID=mRNA_H-paniculata_contig5482.12947.1|Name=mRNA_H-paniculata_contig5482.12947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7096bp|location=Sequence derived from alignment at H-paniculata_contig5482:772..7867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAGCTAGAGACGCGCCCACGCTGACTACTCCTTTGCGGGTGCGGTGTG
CGGAGGACATATGTAACTGGTAAGATCTCAGGAAATTCCTTCAGTGGACT
TTGATCGGTGTGGGTGTGTTTTGTTGCACTGTTGTTGTGATGGGGTTGTA
AGCATTGCCAGGGTGAAAGGCATTTTACAACGCTGGTCCTTGAAGTTGTA
ACGTTGTAATGTTCAAAGCGAGCAATGTGCTGTACAGGCGCCTGCTGACA
TTGGACAGCTCGAGATGGTTTGGATTACGGCACATACCCATACAATATCC
TCTGAATCAAGCCGAACTCTTGAGCTCGAAATTCTCTCTTAATTTTCACT
AGGACGACCTGCCAACCTGCTGGCTGTGTTGCAGTCCACAGCAAACGAGC
AACAAAATGCCCAACCTGTGTTTGCACCCGTTCACCACCGAGATTTACCC
AACCCTACAACCATGCATGTAGTCCATTTTTGGCTTGTCTATGGGCTATC
GTTGTTAGGCGCCCGTAGCCTCCACTTATGCTTCGGAGAATGGCCTAGGG
TTGGGAAGTTCAAGATTAGGAAAGCGAGAACGCGTGGTTTCTATTTAAGC
AAGTGAGGATGGCGGCCGCCACTCTGGTCGATATAACAAACGGATACACC
TGGCAACGAGGCTGCATTTTCCAGTATCTGTTACAGGCGTTCTGTAGGAA
AACCAGAAATAATCATTTCCTTGCCAGAGGTACGGTATGCTTCACGGTTA
GATTGGGGTGGTGGTGGCGATGGTGCTGATGTTGGTGGATTAATTGTTAG
GTTCGGGGTCGGGGTTTTATTTTGGTTAACGCGAAAGAAAAAAACACAAG
ACAAATTATTTAGTGCAACCACTACAGTAAAACTTCTGAGGGGCGGGAAA
GAAGGCCGATAACCGAGACAAGATATACCTTGGTACTTGCTGGTCATTTT
AACGTACTGCGCAGGGCCGCTGCGGGGCACCCCTGGTAAGTGTGCCTGGC
GACCTCCGAATACCCTGTTCTGAACAGGGAGGTTCATAGCAGTCCTTAAA
CCACTACACCACCCTTTCTTCGCGGAAACACACCATTATTGACGTGTAGT
CGGTAGTTTCGTAATGAGTGCTTCTAAAGTGGCGGAAGCAACTTTTATGC
TAAGAGATGTTTTGGTTTTTATCTCTCTTAGGGCGACGCCTCCAGGGGGC
ACATCTATATCGGATGAAAGATCTCGTTACGACCTTTCCAGTGCACCCTT
CGGCTGTTGTCACAACGTGACTCTTAGAACCCAAAATGCCGATTTACATA
AATCGGGAATAATCAAGAAAGAAAATCGAGTTTTTTCGCTTGTTTCTCGT
AACAACCAACAATGTGACATATTTTCGAGGTTAGATTGCCTATGATATCA
GCTTTCGAACGATACTGGCAGGGGCCATAACTCCCCGCCCTGAGGGGTTT
AAGAAACCAAATACGATGGAGTGTCGGTTTGGCACGTTGTTTCGTAGGTT
GTCACTATCCAAGGGTATAGTTGCCACGATCCAAGTATCTCTCCACATCG
CGGTCTGCAGCACATACTACAGCCTGCATACCGCTGGAGTGAGGATGTTG
GCCGCAGTATTGACGATGAAGCTCAAAGATCTTGTGCTTCAAGCAATCAA
GGCGTCCTTATTCAGCGGCGCTAAGTGTGTCAAAGCTGAGAGGGCAACAA
ACACTACGAAACGCAACTCGTACATTGTGCGCATCTATGCTACAAATGAT
GGAACATGTGTGCGACGCGAGAGTAGCGGTAGCGAAGTGTTGGGCAGAGG
TCGCGACGAAGCCCAAGAGTGGTTGTTTTGTGATAGACTTGACGGAGGAG
GGCTGGTATGTGACCTTTACCTAGGCTGTGGACTTAGCGAGAGACGAAAG
CGCAAGCCTGCTGGGGACATCAAAGATCGTAGCGAGTGACGCTCATCGTA
GAGTCAACTGCCCCGTTCCATGTGTACATATATTGACCGACATGTAACAA
TGTATATGCCGGTAATTTCAGTTAATTTATTCACGTGATTATTTATATTA
GTAATGAACCTTTACGGTGTCCTCGTTTAAAAAAATAAGCATGGATAGCC
TCGGCATGCCCAATATGTGGTTATACTTCATCTCGCCGAAAAAAACGAAA
ACAATATATAGGATGAAAAAATTCCTCTGTGGAAACCTCTGAAAAACATT
TCGAACAGTTGGACGAAGCTCACAACTGATGCTTATTTTTTTGTTGGAAT
TCCAAACATATATATATCAATTTGTTTCGTCAATACCATGAGAAGTTATG
ATGACACACACTTTTCGTAGAAGTTGCTTCCGCCACTTTACCACTGAGCC
AAATTTACCTGGGTTGGCTAGACGTACTGGTACATTCTTCCTTTTCCAGA
CAGATTGGGCTTCCTCTTCTGTTGCCTGGGGGTGTGACTTGCCTTTGTTG
ATTCTGCACCCTTCCCTGGCAGACCCGGGAACGTTTCCTCGAGGCGTTTT
CAAAGCTACGATTTGAAGTCATCCACCACGAGTGTTTCTATTTTGCGTCC
CACAGGTGGAACCAAAAACGCCCACGTACCACTCTAGTTCGATCTGGCCT
ATCGGCGTTGTTGTGTATATGTACGTTGGGACAGCGCGTGCAACATCCCC
ACACCCACCAAGTCTAACCGCTAACTCAAAACCAAACCCAAACCCATCGA
TGCTTGTGTGCGTTGGTAAAGCGTACATTTGACCCATCTATGTTGGCAGA
GTTTACATCTGACCTAACTGAGTTGGCAGAGCGTGCGTGTGTGTGTTGGC
AGAGCGTGTGCGTTCTCGAATTGTTACTGATCCTTCCCAAGTTGGAGGAG
AATTGGTGTACATTTTCTCGTTGGGCGCCCTCCCTGAAAGTACGTGTAAG
CACTACGCGCATGGATTTTGTCTCTCCATGGGTTATTATTTTGGTGTTAG
GGTTCGTCGAGTTTACCTTCTTACCTACTTCAAGGCATGCTTATTTTTTC
GAGTTCCTTTTACGTCGTGTAGGGTTCGTTTTTTTCCTGAGGTCTTTATT
CCTGTACACCATGCAATCGCTCGATTTGACGAAAACAAACAAACTGGGAT
CCGCTCGCGTTTGGAAATTGTCGATTGGGTGGACCCTGGGTAGGATGCTT
CACTTTGTGAACCACGATGCGGTCGCCGATGTTTGCGGATTAATGAACCA
TGTTCTAGCCAGGAGTTCTAAATGACGTTTGTAGAGCGCGGGTAATTCCA
CCATTTTCTAGGTATTGTACAGTAGGTGGTCGCATCTTGCGGAAAAGCAC
ATGCCATATGTTGACCGCTACTACGGTATCTGTTGAGTAGTACGCATGCT
GGTGGCATGCAGCTGCGTACGGCACTTTACGTGTCAAGCTGTATGTACCG
TTCAGTGGTGATAGGTCGGCTACCTTTCAGACATTGAAATCATTTGATAG
CCTCCTCCATGAGCAAGCATTTCCTCATCTCTTGCCACCAACGATGACCA
CACACACGGCGGATATCCTTCCTCCCCCCTCTCGTTGACTCCGCGATCCT
CCTGAATTGCTCTGCGATATACAGGTCATACACCCAGTGTTAGGAGATAA
CTTTTCACAACCGGGTTTAAATTATTGCTCAGCGCCAAAAACGGGGTTGT
CGTAGCATGCATGGACTGCAGCCTTCCCCGCCTCTGATGCCTCCGGCGCC
GTCATTGGTTGCGGCGGCGGTGAGCGATGGGTTGGCAATGTATTGTCCAG
GCGTGTTCATTAGAGGCGGTAGCACATACGATTATTCACAGCCGCCGACG
ACAAACTCGCCTCCTGTCGACCACGGTGGTTATCCACCAGTGGGCGTTGT
CGTTGGTGCTGGGGCTGCGGGTGCCTTGGCGGGTGAGTTATCGCGTGCCC
GTGCACAATTGGCGCTTGACTGCCAACTTTGCGTAATATCTCGTTATCGC
GTCGTTGATTTGGTCCCGTGTGATCGAGAGGTACTGTGTGTAGCTATTGG
CAAGCTTGAGTAGGCCTGATGGTGGGTTTGTGAGTTTCAACAGTTTGGTC
CCTGACCTCGACGCTACACTCGCTTTCGATCGTTGAGTCGTGTGACGTCT
TGAAAGAAGGTTGCTTATACTAGTGTTTAATATGCATCGTTCTCGTGACA
ACAAAGTTGCTGTAAAAGTCTATGCAAAGGGACTGTTCTCGGATTTGGCC
CAGGATATCCATCAGTATAACCTGGAGAAGTATCGTGTCGCTGATGCCAC
AAGATACGAGTAAGTTGTATTCGGTACGGCTTGACCCTGGATGCGTGTGT
TGCGTTATAAAAGGAGGCTCTAACACACGCAGTTCTCGACACATCCCTGG
CTGTTTGTCCTTGTATCATTCGCGAGTGATGGTGTCGGCGTTGAATTTGA
ACCGTGTCCACTCCTAACCCCCTGTTTGTTTTTGTCTTGTGACTTAGGTC
ATCTGGTGTTTCACTCTTTGCTGATATCGGTCGGGCTAGGGGTGGGAGCC
ATGGGCGTTGCAGCGAGCGCCGACGGAAATGTAAGAGTCACACATCAATG
AGTCTGTTCGTGTTTTTCTCTGCAGACCTGTGAAGAGTGTGCAGCATCAA
CAAACAATAAATTTGGCATCCTCCCATAAGTAAAAGCTACTCGGGAACTC
GGCGGAAAATATGAAATATTTAACGTGCTCACCTTGGTCTCTTCACGGTC
CACAGTAATGGCCATATATATTTATTTTCTTGATTGCACGAGAGTTGTGT
ACGAGACACCCAAATGTGCATGTATTTTTTTGGATAGTCATGGCTACTGA
ACGTTTCGAAATTGACGTTGCCGAACCGATGCAGCAAATGTTGTGCCGAT
TTCGAATCACGCTGGGCGAATTGTCAACGACACTGATTCACCCTTTCTTC
AGGATCGGGTACACGACGACGTGCTCCAAATATCCTGATTATCACTTACG
AAATTCTCTGGCGAATTTTTTCACTTCGTTCAGGTTTTTCTGTTTTGCAG
TGAACACGGGTTCACGTGAGGTGTGTTGACAGTTCTGAATTATTCGTTTG
CTGTCCTGTATGACCTGTCATGACAACAGTCGAGAATCAGCTGCTTCTTC
CTTGCCGGTGCTTCTCACCCACTTTTGCTTCATGCAGGCTGGTGAGATTG
CCCGATCATCCGGTAGGATGGCTCTGGCAGCATTCGAGCGCACCAAGGAG
GTCAACGAGCGATACCATCTTACAGAGAGGGCAAGTGCTGGTTCCTCATC
ATGCCCACACGCATTTTTCAATAGTGCTGATCACATCCGCCTCATCGGGA
CGCTCCGCAACAACCAAGCTGATTATGTTGCTATTTGAAAGCTGTTCACC
ATATGCAATGGCATATATGACGTTTATTTTAACTATTCGTTGTTCATGCT
GTCCATATCATGCAGTAGGTGGCAGCTGAGTGTCGTCACGCTAGCGTCGG
CACGGGGTCTAGGAAAGACACCATCGGCATTGTTTTGATGATTTCGCATC
CTATAACTGTTTGCTTTTAAAATTTTGTGCAGTTGGCGGAGGGCATCCAG
TCGGCCGCAAGGGGGTTCCGAGAATTCGATGAAGAGCATGCGGTGGTCCA
CAACGCGACCGAGGGCGTGAAACAGGCTTGGCGTGACTTAAGGCAGGCAA
GCGACTGGAGGGAGCCTCATGGGCACGAGGGTGCGCCACCAGAGCGCGGG
GGGCGGGGTATGGGCAACTATAATGAATTGGGACGCCACAATGAGTTGGG
TCGACCCTCAGAAATGTTGCCGACAGGGCACGGAATGGGTACCGCGATGA
TGATGTGTACGGGTTCCCGTGGGCCGTCGTGTACTACATTCAAGGCTTAT
ATCGTACAGGCCGAGCCTCCGTCCGTTCAGATAATTATCGATTCTTCTCT
CCCAACTTCGAATTTTCCATATCCCCCCCCCTCCCCACCCCTACTCCACG
AGAATGATCTCTGTATCACGGGGAAGTGACACCGCGTGATCCCAGCCTTC
AGCAGTATACCTCTCGAATCAGATATGCATGCACTCCTCACCTCCCGTCG
CCCTCTTGTCCATTACGTCTGTCTTGACTGTGTTCGCCAGCAGTTCGACG
AAGAGCACCAGCTCACTACAAAAGCAGGCAACGCGGTGAGTGATGGGTTG
GACAAGTTGGCGAAAGTCTTGGAGCCACCCAAGCCTTCGTCGTCCTCCAA
CAGAGCTCGCGACGGTCGCATGACGGGAGGGGTCTACACCAGCATTGGAG
AACACAGTCGCAGTCGAAGCGGTGGAGGCGGCATAGAAAACGAAAATTCC
AACCAGCAGCAGCCACGACAGCAGCAGCAGCAGCATCATGGTCCACGTTC
CAGAGTAGAGGATCAGCAGACGACCCAGCAACAGCCAAGTCAGTCGTCTG
TACCACCGTGGGGAAGGGTTGACGGTGATGCGGATGAGGTCAGGGATTGG
TGGGGGGAGGATCCTGGCTGGAGGCAGTAGCAATGTTTCTGGTTGTCTAG
TGTCAAAGAATTGCAATGTGTGTGAACGCCTTGGCACTTTCTACTTGCTG
TCGCTGGCAGCTTTCACGGAAATTTTGTTGCGTATTCGGGTACTTGGGGT
TGAATGACTTCATATGTAAATATGTAAGAATATACGAATATATATCAAGT
AGAAGTCAGACACGGAAGCGGACATTACCTACCTTGTTATTGTTTTGGCA
GATATTTGTTCAATGCTTGTGAAATGGAGGCGGAGGTACTACCGAACAGT
CTACGAAATGTAAACTGTGCTCGTGTATTCCCCGTGCTCTGTCCTTGTTT
TACATCTCGTGAAGAAAGTGGTTTCTTGACTGAAGCACGACTTGGTTATC
GTCCCCGCTGGTGCATCCCACAATACCTTATTCCATGTTCGGGGTACCTT
CTCCTCTCCGTTTGGGACCATATCGAGCAAAAACTATCCTCCTTCGTTCC
AATCATCTCAGTAGGGTTCATTTGATATGGCTACTCCGACAGCTGCTTGG
CTGTTGTCAAGATAAGGATGTTCGGGAAGGTTGAGCAACGTAGTAGTGGG
TGCATCGTGAGTAGAACTTCAACTTCCTTCGGGGGGAAAATCCAAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig5482:772..7867+ >mRNA_H-paniculata_contig5482.12947.1 ID=mRNA_H-paniculata_contig5482.12947.1|Name=mRNA_H-paniculata_contig5482.12947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig5482:772..7867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGGACTGCAGCCTTCCCCGCCTCTGATGCCTCCGGCGCCGTCATT
GGTTGCGGCGGCGGTGAGCGATGGGTTGGCAATGTATTGTCCAGGCGTGT
TCATTAGAGGCGGTAGCACATACGATTATTCACAGCCGCCGACGACAAAC
TCGCCTCCTGTCGACCACGGTGGTTATCCACCAGTGGGCGTTGTCGTTGG
TGCTGGGGCTGCGGGTGCCTTGGCGGATGCATGGACTGCAGCCTTCCCCG
CCTCTGATGCCTCCGGCGCCGTCATTGGTTGCGGCGGCGGTGAGCGATGG
GTTGGCAATGTATTGTCCAGGCGTGTTCATTAGAGGCGGTAGCACATACG
ATTATTCACAGCCGCCGACGACAAACTCGCCTCCTGTCGACCACGGTGGT
TATCCACCAGTGGGCGTTGTCGTTGGTGCTGGGGCTGCGGGTGCCTTGGC
GGGTCATCTGGTGTTTCACTCTTTGCTGATATCGGTCGGGCTAGGGGTGG
GAGCCATGGGCGTTGCAGCGAGCGCCGACGGAAATGTCATCTGGTGTTTC
ACTCTTTGCTGATATCGGTCGGGCTAGGGGTGGGAGCCATGGGCGTTGCA
GCGAGCGCCGACGGAAATGCTGGTGAGATTGCCCGATCATCCGGTAGGAT
GGCTCTGGCAGCATTCGAGCGCACCAAGGAGGTCAACGAGCGATACCATC
TTACAGAGAGGGCTGGTGAGATTGCCCGATCATCCGGTAGGATGGCTCTG
GCAGCATTCGAGCGCACCAAGGAGGTCAACGAGCGATACCATCTTACAGA
GAGGTTGGCGGAGGGCATCCAGTCGGCCGCAAGGGGGTTCCGAGAATTCG
ATGAAGAGCATGCGGTGGTCCACAACGCGACCGAGGGCGTGAAACAGGCT
TGGCGTGACTTAAGGCAGTTGGCGGAGGGCATCCAGTCGGCCGCAAGGGG
GTTCCGAGAATTCGATGAAGAGCATGCGGTGGTCCACAACGCGACCGAGG
GCGTGAAACAGGCTTGGCGTGACTTAAGGCAGTTCGACGAAGAGCACCAG
CTCACTACAAAAGCAGGCAACGCGGTGAGTGATGGGTTGGACAAGTTGGC
GAAAGTCTTGGAGCCACCCAAGCCTTCGTCGTCCTCCAACAGAGCTCGCG
ACGGTCGCATGACGGGAGGGGTCTACACCAGCATTGGAGAACACAGTCGC
AGTCGAAGCGGTGGAGGCGGCATAGAAAACGAAAATTCCAACCAGCAGCA
GCCACGACAGCAGCAGCAGCAGCATCATGGTCCACGTTCCAGAGTAGAGG
ATCAGCAGACGACCCAGCAACAGCCAAGTCAGTCGTCTGTACCACCGTGG
GGAAGGGTTGACGGTGATGCGGATGAGGTCAGGGATTGGTGGGGGGAGGA
TCCTGGCTGGAGGCAGTAGTTCGACGAAGAGCACCAGCTCACTACAAAAG
CAGGCAACGCGGTGAGTGATGGGTTGGACAAGTTGGCGAAAGTCTTGGAG
CCACCCAAGCCTTCGTCGTCCTCCAACAGAGCTCGCGACGGTCGCATGAC
GGGAGGGGTCTACACCAGCATTGGAGAACACAGTCGCAGTCGAAGCGGTG
GAGGCGGCATAGAAAACGAAAATTCCAACCAGCAGCAGCCACGACAGCAG
CAGCAGCAGCATCATGGTCCACGTTCCAGAGTAGAGGATCAGCAGACGAC
CCAGCAACAGCCAAGTCAGTCGTCTGTACCACCGTGGGGAAGGGTTGACG
GTGATGCGGATGAGGTCAGGGATTGGTGGGGGGAGGATCCTGGCTGGAGG
CAGTAG back to top
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