mRNA_H-paniculata_contig5481.12946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5481.12946.1
Unique NamemRNA_H-paniculata_contig5481.12946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5481.12946.1 vs. uniprot
Match: D7FQF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF3_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.130e-33
Identity = 102/262 (38.93%), Postives = 137/262 (52.29%), Query Frame = 2 
Query:   26 RGLESIQAILLSSDDDVRLQCKAANALGSMCNSAEVARGFISGSSSTAVIEKLSCMLRSSNMWAQADAVGCLGWLVGNGMPSHTLQKLIPAVTLLLSKHNGCSLGLSDCNGGEGRTQNIGDGRRGQGDRQRVEDAER----RQEVALERMDNLRVYSLIFLLKATNADPSTMPMMLANEALDLLLEILSMANLNYLTRENPNPEHAIPCGERVDDEPTIDDQNPSLVLTAKLLGAFSLEPVCGAFLLQAKCVPKLLGFRKRL 799
            RGLE+++  LL +  D+RLQCKAANAL S+C S EVARGF +  +S+AV+++L  MLRS + WAQADA GCLGWLVG       L +LIP VT L+ +H      +      +   Q +    R    R            +++ A ERMDN+RVYSLIFLLK   AD                      A   +  R +    +A   G         D   PSL+L A+LL A SL+P   + LL+AKC+P L+  R++L
Sbjct:   16 RGLEAVKDALLKTHADIRLQCKAANALASLCMSEEVARGFTAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLVGTLAGGTALHELIPLVTRLMVRHTTKDDEVFISEERQREQQAVWGRSRSSNSRGXXXXXXXXXXDKEDQARERMDNIRVYSLIFLLKKQEADSVR-------------------ARGVFGQRHHGTDGNAADGGG--------DQTPPSLLLAARLLYAISLDPGGRSSLLEAKCLPPLIRLRRQL 250
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BLAST of mRNA_H-paniculata_contig5481.12946.1 vs. uniprot
Match: A0A5D6YD55_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD55_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.530e-6
Identity = 55/151 (36.42%), Postives = 76/151 (50.33%), Query Frame = 2 
Query:   71 DVRLQCKAANALGSMCNSAEVARGFISGSSSTAVIEKLSCMLRSSNMWAQADAVGCLGWLV--GNGMPSHTLQKLIPAVTLLLSKHNGCSLGLSDCNGGEGRTQNIGDGRRGQGDRQRVEDAERRQEVALERMDNLRVYSLIFLLKATNAD 517
            DVRL+CKAA+ALGS+C S  VA   +      A +  L+ M  S N WAQADA+  LGW+V   +      + +L+PAV   L      S+   D    +G  ++   G  G G R+R  +A      + E   NLRVY+L+ LL     D
Sbjct:  110 DVRLKCKAASALGSLCVS-RVAGQRLLELHGAAALRSLARMATSRNRWAQADALAVLGWVVVIADERALAQVARLLPAVVATLR----ASVARGDA-ANDGDEEHSATG--GXGLRRRHAEA-----ASTEDASNLRVYALVLLLNFLQRD 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5481.12946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQF3_ECTSI1.130e-3338.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6YD55_9STRA2.530e-636.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5481contigH-paniculata_contig5481:5711..8926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FQF3
Hectar predicted targeting categoryother localisation
EggNOG OGs28MT9@1,2QUBJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1907
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5481.12946.1prot_H-paniculata_contig5481.12946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5481 5823..8247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930569.4987032-UTR-H-paniculata_contig5481:5710..58221622930569.4987032-UTR-H-paniculata_contig5481:5710..5822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5481 5711..5822 +
1691481352.513017-UTR-H-paniculata_contig5481:5710..58221691481352.513017-UTR-H-paniculata_contig5481:5710..5822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5481 5711..5822 +
1622930569.602636-UTR-H-paniculata_contig5481:8247..89261622930569.602636-UTR-H-paniculata_contig5481:8247..8926Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5481 8248..8926 +
1691481352.5711381-UTR-H-paniculata_contig5481:8247..89261691481352.5711381-UTR-H-paniculata_contig5481:8247..8926Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5481 8248..8926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930569.531049-CDS-H-paniculata_contig5481:5822..58901622930569.531049-CDS-H-paniculata_contig5481:5822..5890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 5823..5890 +
1691481352.526078-CDS-H-paniculata_contig5481:5822..58901691481352.526078-CDS-H-paniculata_contig5481:5822..5890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 5823..5890 +
1622930569.549752-CDS-H-paniculata_contig5481:6226..65481622930569.549752-CDS-H-paniculata_contig5481:6226..6548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 6227..6548 +
1691481352.5377467-CDS-H-paniculata_contig5481:6226..65481691481352.5377467-CDS-H-paniculata_contig5481:6226..6548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 6227..6548 +
1622930569.5636575-CDS-H-paniculata_contig5481:7038..72771622930569.5636575-CDS-H-paniculata_contig5481:7038..7277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 7039..7277 +
1691481352.5498455-CDS-H-paniculata_contig5481:7038..72771691481352.5498455-CDS-H-paniculata_contig5481:7038..7277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 7039..7277 +
1622930569.5820596-CDS-H-paniculata_contig5481:7760..82471622930569.5820596-CDS-H-paniculata_contig5481:7760..8247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 7761..8247 +
1691481352.56109-CDS-H-paniculata_contig5481:7760..82471691481352.56109-CDS-H-paniculata_contig5481:7760..8247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5481 7761..8247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5481.12946.1

>prot_H-paniculata_contig5481.12946.1 ID=prot_H-paniculata_contig5481.12946.1|Name=mRNA_H-paniculata_contig5481.12946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=372bp
MCNSAEVARGFISGSSSTAVIEKLSCMLRSSNMWAQADAVGCLGWLVGNG
MPSHTLQKLIPAVTLLLSKHNGCSLGLSDCNGGEGRTQNIGDGRRGQGDR
QRVEDAERRQEVALERMDNLRVYSLIFLLKATNADPSTMPMMLANEALDL
LLEILSMANLNYLTRENPNPEHAIPCGERVDDEPTIDDQNPSLVLTAKLL
GAFSLEPVCGAFLLQAKCVPKLLGFRKRLRQHCKVASNTQTTGQASPAAT
LCGHHQHRHQQKHDHACCSRDQNRAPPESANVSVTPRESPATSTIPTNVC
TACPDACDEKKGDDRTNSVTKSRHVLSTREAREGGGCGQDSSIYSEEPQQ
PGLDDLITFVVEQVLSWGVRK*
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mRNA from alignment at H-paniculata_contig5481:5711..8926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5481.12946.1 ID=mRNA_H-paniculata_contig5481.12946.1|Name=mRNA_H-paniculata_contig5481.12946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3216bp|location=Sequence derived from alignment at H-paniculata_contig5481:5711..8926+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACGACACGCGTATCGAGCGTACAAGGGGACTTGAGTCGATCCAAGCTA
TCCTTCTCTCGTCAGACGATGACGTACGGTTGCAATGCAAAGCCGCCAAC
GCTCTTGGCTCGATGTGCAACTCGGCTGAGGTGGCGAGGGGCTTCATCTC
CGGTTCCAGCAGTACGGCGGTCATCGAAAAGTAGGTACCGTTTTTTTTTA
TCAACGTTTATATTTGGAACATAAAAATAGTAATCCTGTAAGTTCCAACG
TCTGTCTCGTGCAGCATTGCACGCTACATTCGCGGTACAATATCGTTTGA
TGGCATGTTCAGCACTCTGTGCAGTTCTTAAGCTATCATATGAAAGCCGA
CTTGAATTGAAGGCGATATCTGGCGCCGCATCGTCTTGTCAGGTATGTTC
TGCCAATACACGGCATTCTTCGCACCATCCACATGCCCTACCGACTAAGC
AATATTAGAAATGGCCCAGTCTTATCTCGTTTTTCCGCGCGCCGTTCGTC
ATTCCCCTACGTCCAGACTAAGCTGCATGCTGAGATCGAGCAACATGTGG
GCGCAGGCGGACGCGGTGGGTTGCTTGGGCTGGCTTGTGGGAAATGGCAT
GCCCTCTCATACACTTCAAAAGCTGATCCCCGCCGTGACGCTTCTTTTGA
GCAAGCATAACGGGTGCTCGCTCGGTCTGTCTGACTGTAACGGAGGCGAA
GGTAGGACACAAAATATCGGGGATGGGCGCAGAGGACAAGGCGACAGGCA
AAGGGTTGAAGATGCGGAACGACGGCAGGAGGTTGCGCTCGAGCGGATGG
ATAACCTTCGCGTCTACTCGTTGATATTTCTTCTCAAGGTACCGCATTAT
TTGTATTATTGTATATTTTCTACATTTATTTGCTCGCTTTGCAAGCCTCT
GCGCTTCTATTAAAGGTCATATTCCATCCAGGATAGTTTCCTGGGAGAAT
GGATCGGACCCTTGGTTTGATGAAGCAAGATGTAATGTGTCGGACGCGTG
TGTCTTGCAGAGAAGAGCGGAAACGAACACGCCCATGCAGTTGTAAGGTT
TTGCCATCCGTCTTTTCTATAATTCTCCATTACAGTTAACCTTACTTTTC
AATGTCTTTGCCACAAAACATGGTTATTTCTAGTCCCCGTCGCTTTCATC
GACCTTCGAATCATTTTCGTAGAACCCATGTCATGTGCGCCATGCGCAGT
CGCGATCCATTTTTCTCTATGCAAAAATTACACACAAAACGACGCACGCG
TTGATTACAATGATTTTTCTCCCTTCTGTCCCTCCTTCAAATGTGTTCGT
CATTCGATGCATATGAGCGTGCACGAAGGCCACGAACGCTGACCCATCGA
CGATGCCGATGATGTTGGCAAACGAAGCTCTCGACCTCTTGCTGGAGATT
TTGTCGATGGCGAACCTGAATTATCTCACGCGAGAAAATCCAAACCCAGA
GCATGCGATTCCATGCGGCGAGCGAGTGGACGACGAGCCAACGATAGACG
ACCAGAACCCTTCTCTTGTGCTGACGGCAAAGCTGCTTGGCGCTTTTTCA
CTGGAGCCTGTATGCGGGTACGTGCATTGCGTTTATTGCGTTGCGTTTTA
TATGTGCTTCTGTTTGAACACCGTTGATTCATAAATACAGCGATGTATTA
TCTGCCCTCTCAATTGGGCCAAATCGCAACGGACGCGACGTGTTGGCACG
TGTCTGATTTTGATACTTTGATATCAACTCTTGGACTCGAGGCCTGGGAA
AATGCGGTGGAGGAAGTTGTTGAGGTCAAAGGTATGTTGCTTCCCATGCT
TGTCTCCACCAGCGCTAGTGCGAGGGGGCAACCTTCCCGATGGACTCGTT
CACGAGGTTCACTTCCCTGTCTGTTTTCCATCTTCTCTGTAAATCTTGAC
ATCAGCTGGCACTTTCAATATAGTTGTCTATCCTGTTCCAACGGGTTTGA
ATTTTAAAACACATCTCGGGGACATTACTATCGTAGATTTTGCGTCGCTC
TCATACCCTCTTGTTCGTTGCTGCTCTGGCTGTGCCGTGGCGTGTTCCAG
GGCCTTCCTTCTCCAGGCGAAATGTGTGCCGAAACTTTTGGGCTTCCGAA
AGCGCTTGAGGCAACACTGCAAAGTTGCTTCCAACACGCAAACTACCGGA
CAAGCCTCGCCTGCGGCGACATTGTGCGGTCACCACCAACATCGTCACCA
ACAAAAGCATGATCATGCATGTTGTTCACGAGACCAAAACCGTGCGCCTC
CAGAGTCTGCAAATGTATCTGTGACACCTAGGGAATCACCCGCTACTTCC
ACGATACCCACTAATGTATGTACAGCATGTCCAGATGCATGTGATGAAAA
AAAAGGAGACGACAGGACTAATTCCGTTACAAAATCTAGACACGTACTTT
CAACGCGAGAAGCGCGAGAGGGAGGCGGCTGTGGGCAAGATTCATCGATT
TATAGTGAAGAGCCACAACAACCAGGGCTGGACGATCTAATCACGTTTGT
TGTGGAGCAAGTCTTGTCTTGGGGAGTACGTAAGTAGGCATGACCAATGA
TTACTGTTGTCCAATGATTACTGTTGTCCTAGTGTCCAGTCCGAAAAGTG
TCAATCATCATATCACTCACAATTCGTATGTGCGCGGTATATTTTGCAAG
AATCACTCTTGTTGGTGGTGGGACGGACTATCTTCAGCTTGAAAAGTAGA
CACGTGGACCCTAGAAAGGGTATGATACTGCTGCATGGTGTACGCTGCGC
TTACCGTATTGGAGCTTCGGTGTCTCATTATTTATTGTAGAAAGTCTGAT
TCATATTTCTAGGTTTTGGGCAATAGTGGGTGCATTGCCCCAGGATTCCA
CTCGGAGGCACGAGGTGCTCGCCCGTTAGGCATACTGTATCTCTTCAGCT
GCGATAATGCGATTTCCAAAGTGAAATTAGCATTGGCAGAAAATAGTCAG
GGTGTCGGTTTTGTATAAGACCATCTGTCGATGTGCCTGAGCTGCGTCCT
TCACTGTTTGGCGCTGGCTTGTCCGTCCGGTCGATCGATACAAAAACGTT
GTGTGGCACGCTTGAGGAAGTACCTCAAACAAGAGCAGCTTTGATCAACG
GTCCAGTTACGTCGTGGCTGCGTTGGGGCACACGACTCGCCCGTGATCGA
CCGTCAACCGTATGGAACCAACAAGTGACACACTACGTACTATGGTCGAG
GGGTTCTCAAAAGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5481:5711..8926+

>mRNA_H-paniculata_contig5481.12946.1 ID=mRNA_H-paniculata_contig5481.12946.1|Name=mRNA_H-paniculata_contig5481.12946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2232bp|location=Sequence derived from alignment at H-paniculata_contig5481:5711..8926+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAACTCGGCTGAGGTGGCGAGGGGCTTCATCTCCGGTTCCAGCAG
TACGGCGGTCATCGAAAAATGTGCAACTCGGCTGAGGTGGCGAGGGGCTT
CATCTCCGGTTCCAGCAGTACGGCGGTCATCGAAAAACTAAGCTGCATGC
TGAGATCGAGCAACATGTGGGCGCAGGCGGACGCGGTGGGTTGCTTGGGC
TGGCTTGTGGGAAATGGCATGCCCTCTCATACACTTCAAAAGCTGATCCC
CGCCGTGACGCTTCTTTTGAGCAAGCATAACGGGTGCTCGCTCGGTCTGT
CTGACTGTAACGGAGGCGAAGGTAGGACACAAAATATCGGGGATGGGCGC
AGAGGACAAGGCGACAGGCAAAGGGTTGAAGATGCGGAACGACGGCAGGA
GGTTGCGCTCGAGCGGATGGATAACCTTCGCGTCTACTCGTTGATATTTC
TTCTCAAGACTAAGCTGCATGCTGAGATCGAGCAACATGTGGGCGCAGGC
GGACGCGGTGGGTTGCTTGGGCTGGCTTGTGGGAAATGGCATGCCCTCTC
ATACACTTCAAAAGCTGATCCCCGCCGTGACGCTTCTTTTGAGCAAGCAT
AACGGGTGCTCGCTCGGTCTGTCTGACTGTAACGGAGGCGAAGGTAGGAC
ACAAAATATCGGGGATGGGCGCAGAGGACAAGGCGACAGGCAAAGGGTTG
AAGATGCGGAACGACGGCAGGAGGTTGCGCTCGAGCGGATGGATAACCTT
CGCGTCTACTCGTTGATATTTCTTCTCAAGGCCACGAACGCTGACCCATC
GACGATGCCGATGATGTTGGCAAACGAAGCTCTCGACCTCTTGCTGGAGA
TTTTGTCGATGGCGAACCTGAATTATCTCACGCGAGAAAATCCAAACCCA
GAGCATGCGATTCCATGCGGCGAGCGAGTGGACGACGAGCCAACGATAGA
CGACCAGAACCCTTCTCTTGTGCTGACGGCAAAGCTGCTTGGCGCTTTTT
CACTGGAGCCTGTATGCGGGCCACGAACGCTGACCCATCGACGATGCCGA
TGATGTTGGCAAACGAAGCTCTCGACCTCTTGCTGGAGATTTTGTCGATG
GCGAACCTGAATTATCTCACGCGAGAAAATCCAAACCCAGAGCATGCGAT
TCCATGCGGCGAGCGAGTGGACGACGAGCCAACGATAGACGACCAGAACC
CTTCTCTTGTGCTGACGGCAAAGCTGCTTGGCGCTTTTTCACTGGAGCCT
GTATGCGGGGCCTTCCTTCTCCAGGCGAAATGTGTGCCGAAACTTTTGGG
CTTCCGAAAGCGCTTGAGGCAACACTGCAAAGTTGCTTCCAACACGCAAA
CTACCGGACAAGCCTCGCCTGCGGCGACATTGTGCGGTCACCACCAACAT
CGTCACCAACAAAAGCATGATCATGCATGTTGTTCACGAGACCAAAACCG
TGCGCCTCCAGAGTCTGCAAATGTATCTGTGACACCTAGGGAATCACCCG
CTACTTCCACGATACCCACTAATGTATGTACAGCATGTCCAGATGCATGT
GATGAAAAAAAAGGAGACGACAGGACTAATTCCGTTACAAAATCTAGACA
CGTACTTTCAACGCGAGAAGCGCGAGAGGGAGGCGGCTGTGGGCAAGATT
CATCGATTTATAGTGAAGAGCCACAACAACCAGGGCTGGACGATCTAATC
ACGTTTGTTGTGGAGCAAGTCTTGTCTTGGGGAGTACGTAAGTAGGGCCT
TCCTTCTCCAGGCGAAATGTGTGCCGAAACTTTTGGGCTTCCGAAAGCGC
TTGAGGCAACACTGCAAAGTTGCTTCCAACACGCAAACTACCGGACAAGC
CTCGCCTGCGGCGACATTGTGCGGTCACCACCAACATCGTCACCAACAAA
AGCATGATCATGCATGTTGTTCACGAGACCAAAACCGTGCGCCTCCAGAG
TCTGCAAATGTATCTGTGACACCTAGGGAATCACCCGCTACTTCCACGAT
ACCCACTAATGTATGTACAGCATGTCCAGATGCATGTGATGAAAAAAAAG
GAGACGACAGGACTAATTCCGTTACAAAATCTAGACACGTACTTTCAACG
CGAGAAGCGCGAGAGGGAGGCGGCTGTGGGCAAGATTCATCGATTTATAG
TGAAGAGCCACAACAACCAGGGCTGGACGATCTAATCACGTTTGTTGTGG
AGCAAGTCTTGTCTTGGGGAGTACGTAAGTAG
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