mRNA_H-paniculata_contig548.12943.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: A0A6H5K8F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F0_9PHAE) HSP 1 Score: 412 bits (1060), Expect = 3.260e-126 Identity = 218/316 (68.99%), Postives = 258/316 (81.65%), Query Frame = 2
Query: 1313 VTVPTLLDLESSEETIETLRARSRKLAAASRSNGSASADSEDNPLLSKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLLWRRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLRRLEAMATDPTMFRKSGITILTVTAKRSRLVIDGEMGYDGVKVPFSYRTSLGVKGKGHVVYLKDPEVFWENVGGSLTLPLLPLTTFDIDIGDTARIESIRIVNGQVAIRARFVLSPFPPLVVASVSKRASFRYDVGERLSVIFGNLVQKMRII 2260
V+ P+LL+LE+ +E +E L ++A G A ++D PL SK L W R I+ RA LVEGLEVSV+A+SNR+AMSGLLQ+VGITFNHLEL+NLQIS GA M IT LDLKVMTLLW+RF SFKKPFE+ GSYV TSEDL S +VRRLV NMMN+TLR+LE +AT+P RKS ITI V+AKRSRLVI+GEM YD KVPF+YRTS+GVKGKGHVVYLKD EVFWEN+GGSL+LPLLPL TFD+D+G+ ARIESIRIVNGQVA++AR V+SPFPPL+VASV KRA+FR+DV ERLSV FGNLVQ M+I+
Sbjct: 457 VSPPSLLNLEA-DEPMEVLPPLKERMAM--EETGVERAVTKD-PLWSKILVWVLERAITNRAMLVEGLEVSVDARSNREAMSGLLQSVGITFNHLELENLQISGGARMNITNLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLSTSSIVRRLVTNMMNSTLRKLETLATEP--LRKSSITITQVSAKRSRLVIEGEMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENIGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASVRKRAAFRFDVAERLSVTFGNLVQNMKIL 766
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: D7G8F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F0_ECTSI) HSP 1 Score: 360 bits (924), Expect = 1.180e-109 Identity = 238/447 (53.24%), Postives = 284/447 (63.53%), Query Frame = 2
Query: 932 RTLLSLVKWVLTEAWRGGARKPEGSGMKPASLHNAGVHALFLRKW-WVGAGMAWLVAKSFGGGGGSGGVGERRLAQSRAKGVRSGAAGIANGGSAFKASLEPSLSIQYPRPQSTAXXXXXXXXXXXXXVTVPTLLDLESSEETIETLRARSRKLAAASRSNGSASADSE----DNPLLSKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLLWRRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLRRLEAMATDPTMFRKSGITILTVTAKRSRLVIDGEMGYDGVKVPFSYRTSLGVKGKGHVVYLKDPEVFWENVGGSLTLPLLPLTTFDIDIGDTARIESIRIVNGQVAIRARFVLSPFPPLVVASVSKRASFRYDVGERLSVIFGNLVQKMRI 2257
+ LLSLV+WVLT A R G ++ E + A+ G L+ + W+ A L S V R +K R A G+ + + L +YPRPQST XXXXXXXXXXXX V+ P+LL+LE+ +E +E L ++A AD E +PL SK L W F R I+ RA LVEGLE IS GA M IT LDLKVMTLLW+RF SFKKPFE+ GSYV TSEDL S MVRRLV NMMN+TLR+LE +AT+P RKS ITI V AKRSRLVI+GEM YD KVPF+YRTS+GVKGKGHVVYLKD EVFWENVGGSL+LPLLPL TFD+D+G+ ARIESIRIVNGQVA++AR V+SPFPPL+VAS+ KRA+FR+DV ERLSV FGNLVQ ++I
Sbjct: 112 QALLSLVRWVLT-AGRSGMKRQEQAVATGAAAMERGQRRDGLQLFQWMWRPFAVLEGGS---------VANRNSGGRASKYRRPQATGVPKQRAMLQPLTTQQLQSRYPRPQSTXXXXXXXXXXXXXKVSPPSLLNLEA-DEPMEILPPLKERMAM-------EKADVERAVTKDPLWSKILVWVFERAITNRAMLVEGLE--------------------------------ISGGARMNITNLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLATEP--LRKSSITITQVLAKRSRLVIEGEMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFGNLVQNIKI 506
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: A0A835YIN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIN5_9STRA) HSP 1 Score: 181 bits (459), Expect = 2.380e-46 Identity = 111/293 (37.88%), Postives = 155/293 (52.90%), Query Frame = 2
Query: 1424 ADSEDNPLLSKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLLWRRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLRRLEAMATDPTMFRKSGITILTVTAKRSRLVIDGEMGYDGVKVPFSYRTSLGVKGKGHVVYLKDPEVFWENVGGSLTLPL-------LPLTTFDIDIGDTARIESIRIVNGQVAIRARFVLSPFPPLVVASVSKRASFRYDVGERLSVIFGNLVQKMRII*TVVILG 2281
+D P+ K L W ++I KRA VEGL++ V A SNR A+SG L+ V F L L +QI+ GA M +TG+DLK++ L+ RR +FKKPF+V G +VFTS D +AS +R +VQ ++ A+ L A + + V+ K R+VID V FS +L GHVV L+ + + N G LP D+GD RIE++ I NG+ +R FV++P PPL+VA V KR RYDVGER+S I +++ TV G
Sbjct: 97 SDDAPIPVTGKALSWMLAQIIYKRALRVEGLDLLVQAASNRKALSGNLKTVWCKFRTLALPAIQITGGANMVVTGVDLKMLLLMHRRLGAFKKPFQVRGEWVFTSNDFVASNAIRNMVQAILTASFNALSLGA----------VRVTRVSIKGDRIVIDAR---SSVLQRFSCSANLATSSDGHVVSLRS--LRYSNQAGEFLFQTPWQLAATLPRDLVSCDMGDNTRIEALTIRNGRATLRGCFVVTPTPPLIVADVGKRGMVRYDVGERISAIVSDVLDNALTWRTVKFWG 374
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: A0A4D9D3X5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3X5_9STRA) HSP 1 Score: 174 bits (440), Expect = 7.090e-45 Identity = 107/279 (38.35%), Postives = 158/279 (56.63%), Query Frame = 2
Query: 1430 SEDNPLLSKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLLW-RRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLRRLEAMATDPTMFRKSGITILTVT------AKRSRLVIDG--EMGYDGVKVPFSYRTSLGVKGKGHVVYLKDPE-VFWENVGGSLTLPLLPLTTFDIDIGDTARIESIRIVNGQ-VAIRARFVLSPFPPLVVASVSKRASFRYDVGERLSVIFG 2233
SE P+LS + ++++ K AR V GL+V V A+SN D ++G L V F+ + L+NLQIS G M ITGL+++++ LL RR + +KPFEV G YV T +D+ AS ++R +VQ ++N LR T+F +T V+ + R +L + G + +PF+ T +G+ G GH+VYL DPE V + +PL + FD+DIGD ARIE + I + V + AR +++P PP V V KRA+F YD+G S FG
Sbjct: 2 SERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLR---------TLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPKAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 271
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: W7TXL0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXL0_9STRA) HSP 1 Score: 174 bits (440), Expect = 7.770e-44 Identity = 107/279 (38.35%), Postives = 158/279 (56.63%), Query Frame = 2
Query: 1430 SEDNPLLSKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLLW-RRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLRRLEAMATDPTMFRKSGITILTVT------AKRSRLVIDG--EMGYDGVKVPFSYRTSLGVKGKGHVVYLKDPE-VFWENVGGSLTLPLLPLTTFDIDIGDTARIESIRIVNGQ-VAIRARFVLSPFPPLVVASVSKRASFRYDVGERLSVIFG 2233
SE P+LS + ++++ K AR V GL+V V A+SN D ++G L V F+ + L+NLQIS G M ITGL+++++ LL RR + +KPFEV G YV T +D+ AS ++R +VQ ++N LR T+F +T V+ + R +L + G + +PF+ T +G+ G GH+VYL DPE V + +PL + FD+DIGD ARIE + I + V + AR +++P PP V V KRA+F YD+G S FG
Sbjct: 93 SERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLR---------TLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 362
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: A0A836CBR5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR5_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.890e-41 Identity = 93/248 (37.50%), Postives = 138/248 (55.65%), Query Frame = 2
Query: 1526 VNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLLWRRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLRRLEAMATDPTMFRKSGITILTVTAKRSRLVIDGEMGYDGVKVPFSYRTSLGVKGKGHVVYLKDPEVFWENVGGSLTLPL-------LPLTTFDIDIGDTARIESIRIVNGQVAIRARFVLSPFPPLVVASVSKRASFRYDVGERLSVIFGNLVQK 2248
V A SNRDA+SG L+ V I F L L +QI+ GA+M +TG+DLK++ L+ RR +FKKPF+V G + FT+ D IASP +R +VQN++ A+ RL + + V+ R++ +G + + FS +L GHV+ L+ + + N G LP D+GD RIE++ I NG++ +R FV++P PPL+VA V KR RYDVGERLS + ++ +
Sbjct: 3 VEASSNRDALSGNLKNVWINFKTLALPQMQITGGASMVVTGVDLKMLYLMHRRLGAFKKPFQVRGEWSFTNNDFIASPAIRNMVQNILAASFARLNL----------GPVRVSRVSISGDRILFEG---HSDILQRFSCSANLATSQDGHVISLRSLK--YGNQAGEYLFQTPWQVAATLPKDLVSCDMGDNTRIEALSIRNGRLTVRGMFVVTPTPPLIVADVGKRGMVRYDVGERLSALVSEVLDR 235
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: D8LB91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB91_ECTSI) HSP 1 Score: 153 bits (387), Expect = 3.510e-37 Identity = 101/320 (31.56%), Postives = 148/320 (46.25%), Query Frame = 2
Query: 1442 PLLSKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLL---WRRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLR---RLEAMATDPTMFR----------------------------------------KSGITILTVTAKRSRLVIDGEMGYDG--VKVPFSYRTSLGVKGKGHVVYLKDPEVFWENVGGSLTLPLLPLTTFDIDIGDTARIESIRIVNGQVAIRARFVLSPFPPLVVASVS-KRASFRYDVGERLSVIFGNLVQKMR 2254
P S WF R I A+ L V V A++NRDAM G +++ I F +++Q+S GA + G+D+ + LL WRR ++P E G FT D+ SP +RRL Q ++N LR + A+A + +++L V ++L I+GEM G ++VPF Y SL GHV+Y K V+W GG + LP++PL +F ID+GD ARIE +RI G +++ RF+L+ P VA KR YD+ E LS + N + R
Sbjct: 19 PFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALRPRAKRAAVAXXXXXXXXXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXXSEQQQGGLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASADGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLSRLVSNCLNLRR 337
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: A0A6H5K9J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J0_9PHAE) HSP 1 Score: 152 bits (385), Expect = 4.650e-36 Identity = 99/315 (31.43%), Postives = 146/315 (46.35%), Query Frame = 2
Query: 1442 PLLSKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLL---WRRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLR--------------------------------------RLEAMATDPTMFRKSGITILTVTAKRSRLVIDGEMGYDG--VKVPFSYRTSLGVKGKGHVVYLKDPEVFWENVGGSLTLPLLPLTTFDIDIGDTARIESIRIVNGQVAIRARFVLSPFPPLVVASVS-KRASFRYDVGERLSVIFGNLVQKMR 2254
P S WF R I A+ L V V A++NRDAM G +++ I F +++Q+S GA + G+D+ + LL WRR ++P E G FT D+ SP +RRL Q ++N L+ A + + +++L V ++L I+GEM G ++VPF Y SL GHV+Y K V+W GG + LP++PL +F ID+GD ARIE +RI G +++ RF+L+ P VA KR YD+ E LS + N + R
Sbjct: 115 PFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALQPRAKRAGVVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSAQQQGRLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASQDGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSVGGRFILTNTPGFTVALPGLKRGDINYDLAEGLSRLVSNCLNLRR 428
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Match: A0A0G4EGC3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGC3_VITBC) HSP 1 Score: 121 bits (304), Expect = 4.690e-25 Identity = 86/271 (31.73%), Postives = 133/271 (49.08%), Query Frame = 2
Query: 1451 SKFLCWFFTRMISKRARLVEGLEVSVNAKSNRDAMSGLLQAVGITFNHLELQNLQISAGATMRITGLDLKVMTLLWRRFNSFKKPFEVAGSYVFTSEDLIASPMVRRLVQNMMNATLRRLEAMATDPTMFRKSGITILTVTAKRSRLVIDG-EMGYDGVKVPFSYRTSLGVKGKGHVVYLKDPEVFWENVGGSLTLPL-LPLTTFDIDIGDTARIESIRIVNGQVAIRARFVLSPFPPLVVA--SVSKRASFRYDVGERLSVIFGNLVQKM 2251
S+ + W ++ + R +GL + ++ R+ + G+ V I F L Q L IS GA + I L ++ +LL RR + PFE G+Y TSEDL SP + RL++ + N L ++E + + +TI VT K RL I G PF RT +GV GHVVYL+D V VG + + + L ++ +D+GD I+++ + ++ + AR LS P V S RA+F D+ LS F ++KM
Sbjct: 250 SRLVQWIAVNIMQRCCRSAKGLTIQIDLLRRRNLLRGIFPLVRIRFRKLAFQALSISGGAEVEIRELAIRWGSLLLRRQTFLRGPFETFGTYTLTSEDLEDSPFINRLLRQLANKLLSKMEGTWDGRNIPKLMLVTIEHVTVKDGRLCITGIAHTVLNTMTPFRIRTGVGVTSNGHVVYLRDTVVTL-GVGTPWEVAVNVRLESWTLDMGDNVEIDTLVLAKNKITLVARCQLSSVEPFQVVPPQSSDRAAFSIDLARLLSKFF---IRKM 516 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig548.12943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig548.12943.1 >prot_H-paniculata_contig548.12943.1 ID=prot_H-paniculata_contig548.12943.1|Name=mRNA_H-paniculata_contig548.12943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=741bp MRATMDSVGEKRTVVGKRILISSDSDNNSCRDYSSLNKQRFGRGKAESSTback to top mRNA from alignment at H-paniculata_contig548:894..8840+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig548.12943.1 ID=mRNA_H-paniculata_contig548.12943.1|Name=mRNA_H-paniculata_contig548.12943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7947bp|location=Sequence derived from alignment at H-paniculata_contig548:894..8840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig548:894..8840+ >mRNA_H-paniculata_contig548.12943.1 ID=mRNA_H-paniculata_contig548.12943.1|Name=mRNA_H-paniculata_contig548.12943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4446bp|location=Sequence derived from alignment at H-paniculata_contig548:894..8840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |