mRNA_H-paniculata_contig54787.12941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54787.12941.1
Unique NamemRNA_H-paniculata_contig54787.12941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5K4U4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.820e-8
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:   31 FLPSFQGQKIKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
             +   +   I + + K+       HT T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER
Sbjct:  147 LVDELEAVGIIVNRGKSSALPPPGHTVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 252
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.180e-8
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   31 FLPSFQGQKIKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
             +   +   I + + K+       H  T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GAE LARLL RMPDKQ A L+ ++S  +++ + ER
Sbjct:  625 LVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIER 730
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5JB92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB92_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.860e-8
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   31 FLPSFQGQKIKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
             +   +   I + + K+       H  T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER
Sbjct:   22 LVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 127
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.570e-8
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   37 PSFQGQK-IKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
            P   GQK   I K K+       H  T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER
Sbjct:  324 PRDGGQKPSSIHKGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 428
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-7
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   58 IKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPERVMDAT 366
            I + + K+       H  T  +   L  +G++V  G G  V+G PI TD +VR+ A+ V+ E GAE LAR+L  M D+Q A LI + S  +++ + ER +D T
Sbjct:  805 IVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVA-GEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPT 906
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.840e-7
Identity = 48/157 (30.57%), Postives = 71/157 (45.22%), Query Frame = 1 
Query:   31 FLPSFQGQKIKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER--------------------VMDATSLSLRVGHG*RVTFADDWTRVEIKG 441
             +   +   I + + K+       H  T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER                    V++AT + LRV       F DD      KG
Sbjct:   53 LVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEAT-MGLRVTEDEEEFFRDDCQPDRFKG 207
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.730e-7
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   31 FLPSFQGQKIKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
             +   +   I + + K+       H  T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER
Sbjct:  258 LVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 363
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.080e-7
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   31 FLPSFQGQKIKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
             +   +   I + + K+       H  T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER
Sbjct:  626 LVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 731
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.110e-7
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:   58 IKIKK*KNLGWKGKNHTPTKWEIAALAAMGISVTKGGGAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
            I + + K+       H  T  E   L   G+ + + G  VV G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER
Sbjct:  182 IIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEGITVV-GVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 278
[Close]
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.320e-6
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  169 GAVVMGTPIVTDAFVRQHAVTVVKEKGAEHLARLLARMPDKQAAMLIATKSRARKTCFPER 351
            G  V+G PI TDA+V   A+ V+ E GA+ LAR+L RMPDKQ A L+ ++S  +++ + ER
Sbjct:  692 GITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLER 752
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54787.12941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K4U4_9PHAE5.820e-835.51Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE6.180e-836.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JB92_9PHAE6.860e-834.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0V7_9PHAE7.570e-839.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE1.720e-736.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTC7_9PHAE2.840e-730.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE3.730e-734.58Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KMQ2_9PHAE4.080e-734.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE5.110e-737.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE1.320e-647.54Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54787contigH-paniculata_contig54787:2..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54787.12941.1prot_H-paniculata_contig54787.12941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54787 118..417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930568.7387357-UTR-H-paniculata_contig54787:1..1171622930568.7387357-UTR-H-paniculata_contig54787:1..117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54787 2..117 +
1691481352.1979244-UTR-H-paniculata_contig54787:1..1171691481352.1979244-UTR-H-paniculata_contig54787:1..117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54787 2..117 +
1622930568.776653-UTR-H-paniculata_contig54787:417..5571622930568.776653-UTR-H-paniculata_contig54787:417..557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54787 418..557 +
1691481352.220846-UTR-H-paniculata_contig54787:417..5571691481352.220846-UTR-H-paniculata_contig54787:417..557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54787 418..557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930568.7601337-CDS-H-paniculata_contig54787:117..4171622930568.7601337-CDS-H-paniculata_contig54787:117..417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54787 118..417 +
1691481352.2108068-CDS-H-paniculata_contig54787:117..4171691481352.2108068-CDS-H-paniculata_contig54787:117..417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54787 118..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54787.12941.1

>prot_H-paniculata_contig54787.12941.1 ID=prot_H-paniculata_contig54787.12941.1|Name=mRNA_H-paniculata_contig54787.12941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MGDRRAGGDGHQRHKGRGGCGDGYTDCDRRIRSAARRHSCQGKGSRAPCA
STSAYARQTSGDADRHKVQGSQDLLPGEGDGRDESKPSGRARLEGNLCR*
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mRNA from alignment at H-paniculata_contig54787:2..557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54787.12941.1 ID=mRNA_H-paniculata_contig54787.12941.1|Name=mRNA_H-paniculata_contig54787.12941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig54787:2..557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTTTCGGGGTAAGTGTTGGGCAACGGTTTCCTCCCCTCCTTTCAAGG
ACAAAAAATAAAAATAAAAAAATAAAAAAATCTGGGGTGGAAAGGAAAGA
ACCACACCCCCACCAAATGGGAGATCGCCGCGCTGGCGGCGATGGGCATC
AGCGTCACAAAGGGAGGGGGGGCTGTGGTGATGGGTACACCGATTGTGAC
CGACGCATTCGTTCGGCAGCACGCCGTCACAGTTGTCAAGGAAAAGGGAG
CAGAGCACCTTGCGCGTCTACTAGCGCGTATGCCCGACAAACAAGCGGCG
ATGCTGATCGCCACAAAGTCCAGGGCTCGCAAGACCTGCTTCCCGGAGAG
GGTGATGGACGCGACGAGTCTAAGCCTTCGGGTAGGGCACGGCTAGAGGG
TAACCTTTGCCGATGACTGGACAAGAGTTGAGATTAAGGGTCTTAACGTG
TGAGGATTCTGCACCTTCGGGTGCAGTCTAAAACCGTATGCTAAGACGGC
CAAGTCACGTACAACCCAGCGACCGAAGGCGGTCCTGGACGGCTATCCCA
CAATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig54787:2..557+

>mRNA_H-paniculata_contig54787.12941.1 ID=mRNA_H-paniculata_contig54787.12941.1|Name=mRNA_H-paniculata_contig54787.12941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig54787:2..557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGATCGCCGCGCTGGCGGCGATGGGCATCAGCGTCACAAAGGGAG
GGGGGGCTGTGGTGATGGGTACACCGATTGTGACCGACGCATTCGTTCGG
CAGCACGCCGTCACAGTTGTCAAGGAAAAGGGAGCAGAGCACCTTGCGCG
TCTACTAGCGCGTATGCCCGACAAACAAGCGGCGATGCTGATCGCCACAA
AGTCCAGGGCTCGCAAGACCTGCTTCCCGGAGAGGGTGATGGACGCGACG
AGTCTAAGCCTTCGGGTAGGGCACGGCTAGAGGGTAACCTTTGCCGATGA
ATGGGAGATCGCCGCGCTGGCGGCGATGGGCATCAGCGTCACAAAGGGAG
GGGGGGCTGTGGTGATGGGTACACCGATTGTGACCGACGCATTCGTTCGG
CAGCACGCCGTCACAGTTGTCAAGGAAAAGGGAGCAGAGCACCTTGCGCG
TCTACTAGCGCGTATGCCCGACAAACAAGCGGCGATGCTGATCGCCACAA
AGTCCAGGGCTCGCAAGACCTGCTTCCCGGAGAGGGTGATGGACGCGACG
AGTCTAAGCCTTCGGGTAGGGCACGGCTAGAGGGTAACCTTTGCCGATGA
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