mRNA_H-paniculata_contig54769.12936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54769.12936.1
Unique NamemRNA_H-paniculata_contig54769.12936.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A8F0F7C2_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7C2_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.660e-56
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query:    4 YTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMSVIVNVP 276
            Y NRNIRMA+ +IKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMS+MCAFACLEW+MQTLDAM VI+NVP
Sbjct:   68 YANRNIRMARFTIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSSMCAFACLEWMMQTLDAMYVIMNVP 158          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A8F0F7Z7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.270e-34
Identity = 48/83 (57.83%), Postives = 70/83 (84.34%), Query Frame = 1
Query:   10 NRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
            N  +   KL+++ YYW+LTLR ++QWFPNINPYIHP+Y L++ATD FL++FE  +P ILG+DMS+MCAF CLEW+++TL++++
Sbjct:   34 NMVVHFLKLALRQYYWILTLRLSIQWFPNINPYIHPMYSLLYATDFFLKEFEEIIPAILGMDMSSMCAFICLEWMIRTLESIT 116          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A1L2F1J6_9PHAE (Ycf19 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1J6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.630e-34
Identity = 50/80 (62.50%), Postives = 69/80 (86.25%), Query Frame = 1
Query:   19 IRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
            I   K+ ++ YYW+LTLR ++QWFPNINPYIHP+Y LI++T+ FL+QF+N LP ILG+DMSAMCAF CLEW+++TLD+++
Sbjct:   35 IYFIKVFLRQYYWILTLRLSIQWFPNINPYIHPIYALIFSTEFFLKQFKNLLPIILGMDMSAMCAFLCLEWIIRTLDSIN 114          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A8E5XRH1_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRH1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.330e-32
Identity = 47/85 (55.29%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    4 YTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
            + N+ IR  K  +K+YYW+LTLR ++QWFPNINPY+HP+Y L++ TD FL  FE  +P++LG+DMS+M AF CLEW+++TLD+++
Sbjct:   20 FLNQGIRTIKYLVKSYYWILTLRLSMQWFPNINPYVHPMYALLYLTDPFLENFEGLVPNVLGMDMSSMLAFICLEWIIRTLDSIA 104          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A2R4QPX8_9PHAE (Conserved hypothetical plastid protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPX8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.790e-32
Identity = 50/81 (61.73%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   10 NRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDA 252
            N  I   K+ ++ YYW+LTLR ++QWFPNINPYIHP+Y LI+AT+ FL+QF++ LP ILG+DMSAMCAF CLEW+++TL++
Sbjct:   32 NLIIYFMKVFLRQYYWVLTLRLSIQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLES 112          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: D1J703_ECTSI (Uncharacterized protein ycf19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J703_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 5.750e-32
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDA 252
            +Y    I    + +K YYW L++RF VQWFPNINPYIHPL+GLI  TD+FL++FE+ LP ILG+D+SAM AF CLEW+++TLD+
Sbjct:   33 DYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIAITDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDS 116          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A1I9LVX8_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.330e-31
Identity = 48/88 (54.55%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMSVI 264
            +Y    I    L +K+YYW L++RF VQWFPN+NPYIHP++GLI  TD+FL++F+  LP+ILG+DMSAM AF CLEW+++TL+++ ++
Sbjct:   33 DYIFLTILCTVLFLKSYYWALSVRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPNILGMDMSAMLAFVCLEWMIRTLESIIIV 120          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A7T8G5F0_SCYLO (Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F0_SCYLO)

HSP 1 Score: 113 bits (283), Expect = 1.380e-30
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMSVI 264
            +Y    I    L +K YYW L++RF VQWFPN+NPYIHP++GLI  TD+FL++F+  LP I G+DMSAM AF CLEW+++TL+++ +I
Sbjct:   34 DYLFLTILFTVLFLKGYYWALSIRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESIVII 121          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A6B7EZ30_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ30_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.340e-30
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDA 252
            +Y    I    L +K YYW L++RF VQWFPN+NPYIHP++GLI  TD+FL++F+  LP I G+DMSAM AF CLEW+++TL++
Sbjct:   28 DYLILTILFTVLFLKGYYWALSIRFVVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLES 111          
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A2I4Q2N4_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2N4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.450e-30
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   10 NRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
            N  I + +   + YYW+LT+R T+QWFP+INPYI PLY LI ATD +L QF   +P ILG+DM+ MCAF CLEW+++TLDA+S
Sbjct:   36 NGMIELLRFGARLYYWILTIRVTLQWFPSINPYIFPLYMLIHATDFYLEQFTGLVPTILGIDMTTMCAFVCLEWIIRTLDAIS 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A8F0F7C2_9PHAE1.660e-5691.21Uncharacterized protein n=1 Tax=Protohalopteris sp... [more]
A0A8F0F7Z7_9PHAE4.270e-3457.83Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A1L2F1J6_9PHAE7.630e-3462.50Ycf19 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L... [more]
A0A8E5XRH1_9PHAE1.330e-3255.29Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A2R4QPX8_9PHAE1.790e-3261.73Conserved hypothetical plastid protein n=2 Tax=Fuc... [more]
D1J703_ECTSI5.750e-3259.52Uncharacterized protein ycf19 n=2 Tax=Ectocarpus s... [more]
A0A1I9LVX8_9PHAE2.330e-3154.55Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A7T8G5F0_SCYLO1.380e-3054.55Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0... [more]
A0A6B7EZ30_9PHAE2.340e-3055.95Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A2I4Q2N4_9PHAE5.450e-3057.83Uncharacterized protein n=1 Tax=Dictyopteris divar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54769contigH-paniculata_contig54769:75..356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930568.2094378-CDS-H-paniculata_contig54769:74..3321622930568.2094378-CDS-H-paniculata_contig54769:74..332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54769 75..332 -
1691481351.9962792-CDS-H-paniculata_contig54769:74..3321691481351.9962792-CDS-H-paniculata_contig54769:74..332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54769 75..332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930568.2219443-UTR-H-paniculata_contig54769:332..3561622930568.2219443-UTR-H-paniculata_contig54769:332..356Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54769 333..356 -
1691481352.0065584-UTR-H-paniculata_contig54769:332..3561691481352.0065584-UTR-H-paniculata_contig54769:332..356Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54769 333..356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54769.12936.1prot_H-paniculata_contig54769.12936.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54769 75..332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54769.12936.1

>prot_H-paniculata_contig54769.12936.1 ID=prot_H-paniculata_contig54769.12936.1|Name=mRNA_H-paniculata_contig54769.12936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFL
PDILGLDMSAMCAFACLEWLMQTLDAMSVIVNVPI*
back to top

mRNA from alignment at H-paniculata_contig54769:75..356-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54769.12936.1 ID=mRNA_H-paniculata_contig54769.12936.1|Name=mRNA_H-paniculata_contig54769.12936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig54769:75..356- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTATACTAATCGTAATATACGTATGGCTAAATTAAGTATTAAAGCTTA TTATTGGCTTTTAACATTACGATTTACTGTACAATGGTTCCCAAATATTA ATCCTTATATACACCCCTTATATGGTCTAATATGGGCAACCGATTTATTT TTACGCCAATTTGAAAATTTCTTGCCTGATATATTAGGCTTAGATATGTC AGCAATGTGTGCTTTTGCCTGTCTAGAATGGTTAATGCAAACATTAGATG CAATGTCAGTCATTGTAAACGTACCGATTTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig54769:75..356-

>mRNA_H-paniculata_contig54769.12936.1 ID=mRNA_H-paniculata_contig54769.12936.1|Name=mRNA_H-paniculata_contig54769.12936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig54769:75..356- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAATTAAGTATTAAAGCTTATTATTGGCTTTTAACATTACGATT
TACTGTACAATGGTTCCCAAATATTAATCCTTATATACACCCCTTATATG
GTCTAATATGGGCAACCGATTTATTTTTACGCCAATTTGAAAATTTCTTG
CCTGATATATTAGGCTTAGATATGTCAGCAATGTGTGCTTTTGCCTGTCT
AGAATGGTTAATGCAAACATTAGATGCAATGTCAGTCATTGTAAACGTAC
CGATTTAAATGGCTAAATTAAGTATTAAAGCTTATTATTGGCTTTTAACA
TTACGATTTACTGTACAATGGTTCCCAAATATTAATCCTTATATACACCC
CTTATATGGTCTAATATGGGCAACCGATTTATTTTTACGCCAATTTGAAA
ATTTCTTGCCTGATATATTAGGCTTAGATATGTCAGCAATGTGTGCTTTT
GCCTGTCTAGAATGGTTAATGCAAACATTAGATGCAATGTCAGTCATTGT
AAACGTACCGATTTAA
back to top