mRNA_H-paniculata_contig54769.12936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A8F0F7C2_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7C2_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.660e-56 Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query: 4 YTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMSVIVNVP 276
Y NRNIRMA+ +IKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMS+MCAFACLEW+MQTLDAM VI+NVP
Sbjct: 68 YANRNIRMARFTIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSSMCAFACLEWMMQTLDAMYVIMNVP 158
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A8F0F7Z7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z7_9PHAE) HSP 1 Score: 122 bits (306), Expect = 4.270e-34 Identity = 48/83 (57.83%), Postives = 70/83 (84.34%), Query Frame = 1
Query: 10 NRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
N + KL+++ YYW+LTLR ++QWFPNINPYIHP+Y L++ATD FL++FE +P ILG+DMS+MCAF CLEW+++TL++++
Sbjct: 34 NMVVHFLKLALRQYYWILTLRLSIQWFPNINPYIHPMYSLLYATDFFLKEFEEIIPAILGMDMSSMCAFICLEWMIRTLESIT 116
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A1L2F1J6_9PHAE (Ycf19 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1J6_9PHAE) HSP 1 Score: 121 bits (304), Expect = 7.630e-34 Identity = 50/80 (62.50%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 19 IRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
I K+ ++ YYW+LTLR ++QWFPNINPYIHP+Y LI++T+ FL+QF+N LP ILG+DMSAMCAF CLEW+++TLD+++
Sbjct: 35 IYFIKVFLRQYYWILTLRLSIQWFPNINPYIHPIYALIFSTEFFLKQFKNLLPIILGMDMSAMCAFLCLEWIIRTLDSIN 114
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A8E5XRH1_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRH1_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.330e-32 Identity = 47/85 (55.29%), Postives = 69/85 (81.18%), Query Frame = 1
Query: 4 YTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
+ N+ IR K +K+YYW+LTLR ++QWFPNINPY+HP+Y L++ TD FL FE +P++LG+DMS+M AF CLEW+++TLD+++
Sbjct: 20 FLNQGIRTIKYLVKSYYWILTLRLSMQWFPNINPYVHPMYALLYLTDPFLENFEGLVPNVLGMDMSSMLAFICLEWIIRTLDSIA 104
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A2R4QPX8_9PHAE (Conserved hypothetical plastid protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPX8_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.790e-32 Identity = 50/81 (61.73%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 10 NRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDA 252
N I K+ ++ YYW+LTLR ++QWFPNINPYIHP+Y LI+AT+ FL+QF++ LP ILG+DMSAMCAF CLEW+++TL++
Sbjct: 32 NLIIYFMKVFLRQYYWVLTLRLSIQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLES 112
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: D1J703_ECTSI (Uncharacterized protein ycf19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J703_ECTSI) HSP 1 Score: 117 bits (292), Expect = 5.750e-32 Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDA 252
+Y I + +K YYW L++RF VQWFPNINPYIHPL+GLI TD+FL++FE+ LP ILG+D+SAM AF CLEW+++TLD+
Sbjct: 33 DYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIAITDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDS 116
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A1I9LVX8_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX8_9PHAE) HSP 1 Score: 115 bits (288), Expect = 2.330e-31 Identity = 48/88 (54.55%), Postives = 70/88 (79.55%), Query Frame = 1
Query: 1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMSVI 264
+Y I L +K+YYW L++RF VQWFPN+NPYIHP++GLI TD+FL++F+ LP+ILG+DMSAM AF CLEW+++TL+++ ++
Sbjct: 33 DYIFLTILCTVLFLKSYYWALSVRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPNILGMDMSAMLAFVCLEWMIRTLESIIIV 120
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A7T8G5F0_SCYLO (Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F0_SCYLO) HSP 1 Score: 113 bits (283), Expect = 1.380e-30 Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMSVI 264
+Y I L +K YYW L++RF VQWFPN+NPYIHP++GLI TD+FL++F+ LP I G+DMSAM AF CLEW+++TL+++ +I
Sbjct: 34 DYLFLTILFTVLFLKGYYWALSIRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESIVII 121
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A6B7EZ30_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ30_9PHAE) HSP 1 Score: 112 bits (281), Expect = 2.340e-30 Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1
Query: 1 EYTNRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDA 252
+Y I L +K YYW L++RF VQWFPN+NPYIHP++GLI TD+FL++F+ LP I G+DMSAM AF CLEW+++TL++
Sbjct: 28 DYLILTILFTVLFLKGYYWALSIRFVVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLES 111
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Match: A0A2I4Q2N4_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2N4_9PHAE) HSP 1 Score: 112 bits (279), Expect = 5.450e-30 Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 10 NRNIRMAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSAMCAFACLEWLMQTLDAMS 258
N I + + + YYW+LT+R T+QWFP+INPYI PLY LI ATD +L QF +P ILG+DM+ MCAF CLEW+++TLDA+S
Sbjct: 36 NGMIELLRFGARLYYWILTIRVTLQWFPSINPYIFPLYMLIHATDFYLEQFTGLVPTILGIDMTTMCAFVCLEWIIRTLDAIS 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54769.12936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig54769.12936.1 >prot_H-paniculata_contig54769.12936.1 ID=prot_H-paniculata_contig54769.12936.1|Name=mRNA_H-paniculata_contig54769.12936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp MAKLSIKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLback to top mRNA from alignment at H-paniculata_contig54769:75..356- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig54769.12936.1 ID=mRNA_H-paniculata_contig54769.12936.1|Name=mRNA_H-paniculata_contig54769.12936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig54769:75..356- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig54769:75..356- >mRNA_H-paniculata_contig54769.12936.1 ID=mRNA_H-paniculata_contig54769.12936.1|Name=mRNA_H-paniculata_contig54769.12936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig54769:75..356- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |