mRNA_H-paniculata_contig5472.12935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5472.12935.1
Unique NamemRNA_H-paniculata_contig5472.12935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5472.12935.1 vs. uniprot
Match: D7G1T9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.870e-19
Identity = 69/159 (43.40%), Postives = 93/159 (58.49%), Query Frame = 1 
Query:    1 GTVVDREKAEVEKQHLFAELEGRCRELEMEKQAQAAEYDRKLAEHVAELKTSYLKTKAANREREKLEARHRERFQALEDEKAALRSQLEEKYASASEGLAALSLEKREAQEACSRLREEALKLEERAVTVTNELQTLTEENTGLFEEAESTRAMLAQRG 477
             T   RE+ EVE + L  +LE RCR                          + L  +A  RERE LEARH E+ QALE EKA++R++LE++YAS+SE L ALS EKR+A EACS LR+ A  L++R  T+  EL+ + ++N  L   AES+R +LA RG
Sbjct:  837 STNAGREEMEVESKRLKRDLEARCRXXXXXXXXXXXXXXXXXXXXXXXXXANALDMQAKVREREMLEARHAEKLQALEGEKASMRAELEDRYASSSEELRALSTEKRKADEACSALRDRASALDDRTETMAGELKAMADKNASLTAGAESSRKLLAARG 995
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BLAST of mRNA_H-paniculata_contig5472.12935.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.400e-9
Identity = 52/134 (38.81%), Postives = 71/134 (52.99%), Query Frame = 1 
Query:    1 GTVVDREKAEVEKQHLFAELEGRCRELEMEKQAQAAEYDRKLAEHVAELKTSYLKTKAANREREKLEARHRERFQALEDEKAALRSQLEEKYASASEGLAALSLEKREAQEACSRLREEALKLEERAVTVTNEL 402
             T   RE+ EV+ + L  +LE RCR                            L  +A  RERE LEARH E+ QA      ++ ++LE++YAS+SE L +LS+EKR+A EACS LR+ A  L+ER  T+  EL
Sbjct:  995 STNAGREEMEVKSKRLKRDLEARCRXXXXXXXXXXXXXXXXXXXXXXXXXXXALDMEAKVREREMLEARHAEKLQAXXXXXXSMLAELEDRYASSSEELRSLSIEKRKADEACSALRDRASALDERTETMAGEL 1128
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5472.12935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1T9_ECTSI1.870e-1943.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNU8_9PHAE7.400e-938.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5472contigH-paniculata_contig5472:9430..13614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size477
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5472.12935.1prot_H-paniculata_contig5472.12935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5472 9430..13614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930568.1090486-CDS-H-paniculata_contig5472:9429..95251622930568.1090486-CDS-H-paniculata_contig5472:9429..9525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 9430..9525 +
1691481351.9339526-CDS-H-paniculata_contig5472:9429..95251691481351.9339526-CDS-H-paniculata_contig5472:9429..9525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 9430..9525 +
1622930568.1212614-CDS-H-paniculata_contig5472:10105..102341622930568.1212614-CDS-H-paniculata_contig5472:10105..10234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 10106..10234 +
1691481351.9488614-CDS-H-paniculata_contig5472:10105..102341691481351.9488614-CDS-H-paniculata_contig5472:10105..10234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 10106..10234 +
1622930568.1348715-CDS-H-paniculata_contig5472:12922..131021622930568.1348715-CDS-H-paniculata_contig5472:12922..13102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 12923..13102 +
1691481351.9682329-CDS-H-paniculata_contig5472:12922..131021691481351.9682329-CDS-H-paniculata_contig5472:12922..13102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 12923..13102 +
1622930568.1538393-CDS-H-paniculata_contig5472:13542..136141622930568.1538393-CDS-H-paniculata_contig5472:13542..13614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 13543..13614 +
1691481351.9851193-CDS-H-paniculata_contig5472:13542..136141691481351.9851193-CDS-H-paniculata_contig5472:13542..13614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5472 13543..13614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5472.12935.1

>prot_H-paniculata_contig5472.12935.1 ID=prot_H-paniculata_contig5472.12935.1|Name=mRNA_H-paniculata_contig5472.12935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
GTVVDREKAEVEKQHLFAELEGRCRELEMEKQAQAAEYDRKLAEHVAELK
TSYLKTKAANREREKLEARHRERFQALEDEKAALRSQLEEKYASASEGLA
ALSLEKREAQEACSRLREEALKLEERAVTVTNELQTLTEENTGLFEEAES
TRAMLAQRG
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mRNA from alignment at H-paniculata_contig5472:9430..13614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5472.12935.1 ID=mRNA_H-paniculata_contig5472.12935.1|Name=mRNA_H-paniculata_contig5472.12935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4185bp|location=Sequence derived from alignment at H-paniculata_contig5472:9430..13614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACGGTTGTTGACCGAGAGAAGGCGGAGGTAGAGAAGCAGCATTTATT
TGCGGAGTTGGAAGGCCGCTGTCGCGAGTTGGAGATGGAAAAGCAGGTGG
ATATATATATATATATATATTTATATTTATTTGTGTGTGTGTGTGTGTGT
GTGTCCCGTATCTCCTCATTGTTCGATTCAAGTGATTGGAAACAGTAAAG
CTATGTGTCATGATTTATGGAAGTGTTGAGCTTTTTCATTTTTTTTTTTT
CTTGTGCTTACTTTCTTTTAAACACCTACCAGTTCAGCATGTTGCTAGCG
TTCCTGGAGTCCATGGGGTGCCGTAGAACCTTACCCCTGCACAACGACTA
TTTAGTGGCTTCGTATCAAAAAAATCTGCTGTCGAAAAAGCTGTTGTTGC
TGCTTTCAACCCGGGATAATAGCTATCGTTAGTTAATCATCAACGACAGC
ACATGACTGAAATGCGTGCTCTGCCCTACATCCCAAGACTTGGAACCTAC
CCCTAGAGCAGGCGGTGTCCTCCTTGAAAGCTAATCTCTCTTGGGAGCAT
GGTGTGCTCACAACTGTGAGCACTATACGTGATTGTCTCTTACGTTGTAT
TTTTTTTACCAAGTAAAACAGTTGGAGTTTCAACGTTCCTAATTTTTTAG
GCATATGTTGCATTGTCATGTTCCAGGCCCAGGCTGCGGAGTATGACCGT
AAGCTGGCCGAGCACGTGGCGGAGCTAAAGACTAGCTACCTCAAAACGAA
GGCTGCTAATCGGGAGCGGGAGAAGCTGGAAGCTAGACATAGGGAACGGT
TCCAGGTTTGTTCTGCTCTCTCTCTGTTTCTCTCGACTGACCCTGAACTG
CTGTCGTGATGGACATCACTACAGCGATAGACTGCGTACGTGTACAGTAC
CGCCCTATTGTTGCGAGACTTCTCATGGGGTTTTGCAGTAGATACATCGT
TTTTTAGCCGCTTTCTTTCGGTAATTGGTGTGGAACCAATCTGTGGACAA
ACCGTCCACGGTTGATGGAATCTGTCCCCAATCTCTCTGTTGATTCAAAG
CTACATTATGCTCTTCGAACATAACTCAGTGGCTCAGTTCATGCCTCATT
AATTAGTATGGAGATTGATACCTAATTGGTACCTTGTGTACATGGAGCTT
TACCACTCTATTATTACGATACTGTAGTTTTTTTTTCTTTTTTTTTAACC
CCCTGAAGGCTAAGGCAAACAAATTATCCGATGCTTCCATACTTGAGTAT
TTCTACCCAAGTATTTCTACATTTCCTTTAACAGAACAGAGTTATTTATT
CCTCTACGGGGTAGGCGCCACCTCGGTTCGGCCGAACCAAGTAGGCAGTG
AGCGTTAAAGATCTTGAAAGAAATAACGCCAACTTCGATATCCGACACTA
AAGGACTGTCTCTTGCCGTGGGCTTAAGCTCCTTCCCTCACAACCCTTCC
GAGTGGTACTGGGGTGGAAGGGAAAGGAAAGGACTGTCTCAAGAAGTGGA
GTATAGATCTTTTGAGTAATTTGTGAACATACACGCATTAATTTTTTTGA
AGATAAACTAGAGTATAGTTTAATTTTATTCAAGGTAAGGCGATGAAATT
TACGGTTGGATGTAATGTTTCTTCGTATAGTGGTATTTTTTCGCACCCAA
GCCTAGATTTGGTCTCTCAAGACTTTTTGGGGTTATTATATATAGCTCTT
AACCCTCCTGACCCCGGACGCTGATTCGGAACAAAAATGGCATCTGACAA
TCCGGCCGCGAAAGGGGGGGAGGGGGTGTCCTTCACGAGAGGGGGGGGGG
ATAGCGTGTCGATCTCGCAGTGCTGGAGTTGAGCTCTATGGTATGGAAAT
TTGCTCGAACAAAGTGATAGGTTCGGGACAATCGTGAACGTTTGTTTTCA
CCCAGTGGCCAATCAAAAACATTTTGTTTCCCATATGTCGGTTGACTTTT
TTAAGTTCATACAATCCCTACATGTAGAGAGTACGGAGATACCCCGGCGC
TGTAGGCTGGTCGGTCAGTCGTCTAGGCTTGTTCTTTTTCATTTTAACGC
TGCTGTATGTATATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATTGGG
TGGGTTGCGTTTTGTGTGTGTATAAGGCCCACAATACTGACAGCTGGGAT
CCAGTGCCTCAGTGCTGTGCCATTATTGTGGTTATAGTTGATTTTGTCAG
CCGCGATACGGATGGTTACAATCGACAATCTTGCTGTCGTTTGCCGACTG
TGCTGCTTGTGCTGTTTCTCTATTCTCTACTGTCTATTGGTATCGAAACA
ACGCTGTGAGAACCATGGTGTGTCTAATTTCGTGTTTTGGCGTGCGGCTT
AATGCGGCACACACACACACACACACACACCCTGCACAGTAGCCCGTTAC
TCGCGTTGTGGTTTGTGGTTTGTGTTTTGCGTTTCGATCAAGTTATGAAC
TGTCGTAAAACACAAGTAAAAGCCATGCCAGTTCCTCCTGTCGTTGTGTA
TATAATAATCAGCCCGAAAATCCGAGTGGGATTGAGGGCTGGAACCCCGA
AACCTCCGTGAAGTTTGCGTCTTGCAAATGGGGTAGTACGAGGGGCATCG
TAGCAAGTGTCGTGATTCATGTTCGAAAGGATTTCCGGTTAGGGTTTCCC
TGGGTAACTTCTTTCCGGAGGGCACCTGGCGATCCGTATACTTCGGTATA
TGGTGATGCCTTGTCAGGAAAGAGTCTAAGACCTAACGGGTAGGGCACGG
CTAGGGGTAACCCATTGCCGAGTACCGGACGCAAGTGTGATCAAGGGTTT
TAACGAGTGCGGATTCTGCTTCTCAAAGGGCAGTCTAAAACCGAACGTCA
AGACGGCTAAGTCTCGTACAACGGCTACCCCACATTTTCCATCGGTTCAT
GAGTGTAAAACCGAAGGAAGACGGACGTGATTGTATAACCCGCGTTTTGC
GGGGATCTAAATCGGGACTTAGTACTTGCTACCTAGTCGTGGGTGTAAGC
TCCTACCCTCACAGCGCTTACGATGTGTGTTAACAGAGGTTGCATACGCC
GGGGTGAAAAGAAAAAGTGTCTATAATAATCAGAGGGCCGTCTGTATTGC
CTGTAGAGCTAGCTCCCTATCCCCGTAAGCAAGCACCTCGTGGTCGTTGT
GTTGTGAACAATCCGCGGTAGTTTTTCCTGTTTTCTGGAGGAACTTGGCG
GCAATCGTTGAGATCTCGAGAGAAATAACTTTGGTCTGGATAAATTTTTG
AAGACTTTGGACCTTTATTGGGATAACCCGAAATGAAAATCGCCAGAAAC
TGCAATGTTGGCTGGTCCAGTGGCAGATTTTAAACAAATAACATGAGCAG
CATCGAGTTAACGTGTAATGAATCAGAGGTGCCAGTTCAACGGTCAATTA
GTATCTATCCGACTGGTATTGATGAAATAGGTGCTAGATTTTTCTCCTTT
AAAAAAATTATATATATATATATATATTTATGTACGTCCTCAGGCGCTCG
AAGACGAGAAGGCGGCCCTACGTTCGCAGTTGGAGGAGAAATATGCGTCG
GCTTCCGAAGGTCTTGCCGCTCTGTCTTTGGAGAAGAGGGAAGCGCAGGA
GGCGTGTTCGCGTCTCCGAGAAGAGGCGTTGAAGCTCGAGGAGCGCGCGG
TGACTGTGACGAACGAGCTTCAGGTAACACCGACACTTTTTTTTTTGTAG
TAGTAGTAGTAATAGTAGTGGTAGTAGTGTAATATGACCGTGACTACGCC
CGTGAGGTTCTTGCTTGTTCTCGGCCCATAGACTCGCTGCGCTCGGAGGG
GCTCGCTACGGTCGCATGACGATCTACTTTTCAGGGGTTACTCGGATATA
AAATTGGGAAATTGATCCGAAACCACCTCCACCTCCACCTACCGTACAGC
GCCATAAAAAAATAGGAAGTAGCCATGATGAGGACGGGCAGCTGGACCAC
GTCGCGCGGAAGGGAGCTAATAACAACATATTTTATGCCCGCGCCTCGCC
CCCCGCTCCCAATATACAGTACATGATTAGTACATGAAAGATCTGTTTTC
CTTTTCCTGTCCCTGCCTTGTCTTTTTTTTTCTTTCTTTCTTTCCTTCCT
TCCTTCCTTGTAGACTCTGACTGAAGAGAACACTGGCCTCTTCGAAGAGG
CAGAATCCACGCGTGCCATGCTAGCCCAGAGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5472:9430..13614+

>mRNA_H-paniculata_contig5472.12935.1 ID=mRNA_H-paniculata_contig5472.12935.1|Name=mRNA_H-paniculata_contig5472.12935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig5472:9430..13614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACGGTTGTTGACCGAGAGAAGGCGGAGGTAGAGAAGCAGCATTTATT
TGCGGAGTTGGAAGGCCGCTGTCGCGAGTTGGAGATGGAAAAGCAGGGCA
CGGTTGTTGACCGAGAGAAGGCGGAGGTAGAGAAGCAGCATTTATTTGCG
GAGTTGGAAGGCCGCTGTCGCGAGTTGGAGATGGAAAAGCAGGCCCAGGC
TGCGGAGTATGACCGTAAGCTGGCCGAGCACGTGGCGGAGCTAAAGACTA
GCTACCTCAAAACGAAGGCTGCTAATCGGGAGCGGGAGAAGCTGGAAGCT
AGACATAGGGAACGGTTCCAGGCCCAGGCTGCGGAGTATGACCGTAAGCT
GGCCGAGCACGTGGCGGAGCTAAAGACTAGCTACCTCAAAACGAAGGCTG
CTAATCGGGAGCGGGAGAAGCTGGAAGCTAGACATAGGGAACGGTTCCAG
GCGCTCGAAGACGAGAAGGCGGCCCTACGTTCGCAGTTGGAGGAGAAATA
TGCGTCGGCTTCCGAAGGTCTTGCCGCTCTGTCTTTGGAGAAGAGGGAAG
CGCAGGAGGCGTGTTCGCGTCTCCGAGAAGAGGCGTTGAAGCTCGAGGAG
CGCGCGGTGACTGTGACGAACGAGCTTCAGGCGCTCGAAGACGAGAAGGC
GGCCCTACGTTCGCAGTTGGAGGAGAAATATGCGTCGGCTTCCGAAGGTC
TTGCCGCTCTGTCTTTGGAGAAGAGGGAAGCGCAGGAGGCGTGTTCGCGT
CTCCGAGAAGAGGCGTTGAAGCTCGAGGAGCGCGCGGTGACTGTGACGAA
CGAGCTTCAGACTCTGACTGAAGAGAACACTGGCCTCTTCGAAGAGGCAG
AATCCACGCGTGCCATGCTAGCCCAGAGAGGCACTCTGACTGAAGAGAAC
ACTGGCCTCTTCGAAGAGGCAGAATCCACGCGTGCCATGCTAGCCCAGAG
AGGC
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