mRNA_H-paniculata_contig547.12930.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig547.12930.1
Unique NamemRNA_H-paniculata_contig547.12930.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: D7FT86_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT86_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 1.990e-106
Identity = 188/380 (49.47%), Postives = 246/380 (64.74%), Query Frame = 2 
Query:   44 MILARTLFAKLRPKRPSPREIQEKIDVSRTAALTLAYANRGLRVGVDDVGSSIPHSVDVDRLQLEKEVKELSADEARKWVQASLNDQIVSYFKIVKEVGGVHPQSMDSVARAISVA--------------SVSPSARQKGSVSRRSGETKGQAIERAALDSWRTEQLKEVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQC---HFPEELRPLIPNRYHKPPK-LFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            M++AR + AK+RP   +PREIQ ++D+SR A LT AYA +  +    D  SS          QLEKE+  L+  E ++  Q ++NDQ+V+YF +V       P     +    SVA              + +PSA +  S+S    +   +A E  A+  WR + LKE+LR  LGF T VK+S++ GAG GLFVEGSAPEGA+VAIYPGLVHLPE+L+ + Y + LLPD++ +LMGRADGC++D RT   LPSSPL  AHA NHPP G+A NVLQ AYD+P+        L    +G      FPE LRPL+PNRYH+ PK LFGGK+++ A VETVVLVACRGG+HD+EVFMDYRFNP+MR PDWY+ V+P+   +MW
Sbjct:    1 MLIARAMLAKIRPPPLNPREIQNQVDISRAAGLTAAYAAQQQQ----DKESSCSFD------QLEKEIAALNPLERKRRAQTAINDQVVTYFTLVHAAHTATPPPTLDINGGNSVAPGKDQESPSSEGSATDTPSALRGTSLSGVEEKKTEKAAEGKAVKRWRRKHLKEMLRSELGFNTVVKDSTLSGAGLGLFVEGSAPEGAVVAIYPGLVHLPEHLRSQKYAASLLPDEDHFLMGRADGCLVDGRTAGLLPSSPLTFAHAANHPPEGQAANVLQVAYDFPA--------LSEDDVGIAKGGRFPERLRPLVPNRYHRAPKALFGGKLDQSAMVETVVLVACRGGLHDQEVFMDYRFNPNMRHPDWYSPVDPEATAEMW 362
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: W4GU79_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GU79_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.590e-35
Identity = 115/347 (33.14%), Postives = 166/347 (47.84%), Query Frame = 2 
Query:   98 REIQEKIDVSRTAALTLAYANRGLRVGVDDVGSSIPHSVDVDRLQLEKEVKELSADEARKWVQASLNDQIVSYFKIVKEVGGVHPQSMDSVARAISVASVSPSARQKGSVSRRSGETKGQAIERAALDSWRTEQLKEVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRP---LIPNRYHKPPKLFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            R  QE++DV+  A LT   A +      +    +      V+ ++++      S D+ +K  QA+L  Q+   F              D + R  + A   PS       S  + E KG             E L E++R  LG+   V++SSIPGAG GLF+EG A  G  +A+YPG V+L E+ + + Y+  +   +N +   R DG +IDA   A   ++PLA+A  VNHPP    PNV+  AYD+P                    P +  P   LIPNR+  PP +     +R A V ++VLVA    + DEEVF++YR+NP+M  P WYT VN  E   MW
Sbjct:   19 RRFQEQMDVATVAMLTHFKALQDANPVAEPTEKAALFEAAVNHMEVK------SFDDHKKLAQAALTSQMEHVF--------------DVLVRGKANAGYKPSVFSITEDSTPAQEAKG------------AETLDEIVRRELGYSLHVRDSSIPGAGRGLFLEGRATAGTAIALYPGTVYLSEHYRKK-YLHVV--SNNPFARARFDGAIIDATGEAIPHANPLALAQLVNHPPPDTMPNVIPMAYDFPPAD-----------------PFQTDPHHALIPNRFVHPPSMLAMFGKR-ALVHSLVLVALTD-IEDEEVFLNYRYNPNMEYPPWYTPVNRDEDLNMW 311
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: A0A024UXH6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXH6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.190e-35
Identity = 87/220 (39.55%), Postives = 125/220 (56.82%), Query Frame = 2 
Query:  470 AALDSWRTEQLKEVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPKLFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            +A+ S   E + +++R  LG+   V++S+IPGAG GLFVEG A  G  +A+YPG V+L E+ + + YM  +   +N +   R DG +IDA   A   ++PLA+A  VNHPP    PNV+  A+D+P +        F          E    LIPN +  PP +     +R A V ++VLVA    + DEEVF++YR+NP+M  P WYT VN +E   MW
Sbjct:  111 SAIPSKTKETIDDIVRRELGYSLQVRDSTIPGAGRGLFVEGRATAGTAIALYPGTVYLSEHYRKK-YMHVV--SNNPFARARFDGAIIDATNEAVPHTNPLALAQMVNHPPQDTLPNVIPMAFDFPPE------DPFQS--------EPYHSLIPNHFVHPPSMLAMFGKR-ALVHSLVLVALTD-IEDEEVFLNYRYNPNMEYPPWYTPVNREEDLNMW 311
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: A0A485L2C1_9STRA (Aste57867_14760 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2C1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.170e-35
Identity = 100/298 (33.56%), Postives = 153/298 (51.34%), Query Frame = 2 
Query:  245 VKELSADEARKWVQASLNDQIVSYFKIV---KEVGGVHPQSMDSVARAISVASVSPSARQKGSVSRRSGETKGQAIERAALDSWRTEQLKEVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPKLFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            ++E S D+ +K  Q +L DQ+ S F ++   K V G  P ++ S+ +  S    + SA                            + + + +R+ LG+  +V++S+IPGAG GLF++G AP G  +A YPG V+L E+ + + Y+  +   +N +   R DG +IDA   A    +P A+A  +NHPPA   PNV+  A+D+P +              +    E     IPNR+  PP +     +R + V ++VLVA    + DEEVF++YR+NPSM  PDWYT VN  E  KMW
Sbjct:   62 MEEKSFDDHKKLAQEALVDQVQSIFDVLVRGKAVVGQKP-NVFSITQENSAPPTAKSA----------------------------QTIDDYVRQELGYSLSVRDSTIPGAGRGLFLDGHAPAGTAIAFYPGTVYLSEHYRKK-YLHVV--SNNPFARARFDGAIIDASEAAIPHVNPFALAQMINHPPAETMPNVIPMAFDFPPE--------------EPFTSEPHHSFIPNRFVHPPSMLAMYGKR-SLVHSLVLVALND-IQDEEVFLNYRYNPSMEYPDWYTPVNRDEDLKMW 311
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: W2G4W0_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2G4W0_PHYPR)

HSP 1 Score: 139 bits (349), Expect = 7.410e-34
Identity = 77/204 (37.75%), Postives = 120/204 (58.82%), Query Frame = 2 
Query:  527 GFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPK---LFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            GF   V+ESS+PGAG G+ + GSAP G++VA+YPG+V+LPE+ + + ++S+L   +N Y   R D  +IDA+  +  P +PLA+AH +NHPP+G +PNVL  A+++P +        F+ K        E   LIPN + + P    +FG +    A V  +  +A      +EE+F++YR+NP    P+WY  V+    + MW
Sbjct:   63 GFTLNVEESSVPGAGEGVKLRGSAPIGSLVALYPGIVYLPEHYKKKHHLSELT--NNPYARARFDSVIIDAKKESSNPRNPLAVAHKINHPPSGTSPNVLGFAFEFPPE------EPFTTK--------EYDELIPNNFVQEPSRLSMFGKR----AIVHGLAFIATADIADEEELFLNYRYNPDRPMPEWYAPVDVDSDRAMW 246
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: A0A7S2WW23_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW23_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.920e-33
Identity = 85/233 (36.48%), Postives = 113/233 (48.50%), Query Frame = 2 
Query:  512 LRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENL-QHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSP--------------------------LAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPKLFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            + E LGF   V+ESSI GAG GLF++G    G ++A+YPG V LP ++ Q       L PDD  +L  R DG +IDAR  AQ P +P                            + H  NHPPAG APN +   YD+ S       S+F          E L  LIPN Y +PP L  G       +++V+L+A R  + DEEV  DYR +P+   P WY  V+ +E  + W
Sbjct:  114 VEELLGFHVAVQESSIAGAGRGLFLKGRTKAGTVIALYPGTVLLPGHIMQIPNVFDFLYPDDGHFLFSRYDGALIDARGAAQPPLAPDEDAFRRHLHSHLFSEPMPTPARDNIFGVGHLSNHPPAGSAPNAMMVGYDFES-------SMFRASADDA---ESLASLIPNAYFRPPSLIRGTYSPTVMMQSVILLATRD-LEDEEVLTDYRLSPNQERPAWYAPVDSEEELRRW 335
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: D0N004_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0N004_PHYIT)

HSP 1 Score: 136 bits (343), Expect = 2.490e-32
Identity = 80/223 (35.87%), Postives = 126/223 (56.50%), Query Frame = 2 
Query:  488 RTEQLKEVL------RERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPK---LFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            RT +++E L      ++  GF   V+ESS+PGA  G+ + GSAP G++VA+YPG+V+LPE+ + + ++  L   +N Y   R D  +IDA+  +  P +PLA+AH +NHPP+G  PNV+  A+++P +        FS K        E   LIPN + + P    +FG +    A V  +  +A      +EE+F++YR+NP    P+WYT V+    + MW
Sbjct:  109 RTTEVEEKLGITDNFQKLFGFTLNVEESSVPGADEGVKLRGSAPIGSLVALYPGIVYLPEHYKKKHHLGVL--SNNAYARARFDSVIIDAKNESSKPRNPLAVAHKINHPPSGTPPNVIGFAFEFPPE------EPFSTK--------EYDELIPNSFVQEPSRLSMFGKR----AIVHGLAFIATADIADEEELFLNYRYNPDRPLPEWYTPVDVDSDRAMW 311
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: A0A6G0XH50_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XH50_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.350e-32
Identity = 83/213 (38.97%), Postives = 120/213 (56.34%), Query Frame = 2 
Query:  494 EQLKEVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLP-SSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPKLFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            + L+E +R+ LG+  +V+ S+IP AG GLF++G AP G  VA +PG V+L E+ + + Y+  +   +N Y   R DG +IDA T   +P  +  A+A  VNHPP    PNV+  A+D+P +              +    E  +  IPNR+  PP +     +R A V  +VLVA    + DEEVF++YR+NP+M  P WYT VN  E  KMW
Sbjct:  118 QSLEEFIRQELGYSLSVRNSTIPDAGRGLFLDGHAPAGTAVAFFPGTVYLSEHYRKK-YLHVV--SNNPYARARFDGAIIDA-TGEDIPHKNHFALAQMVNHPPPQSTPNVIPMAFDFPPE--------------EPFTTEPFKSFIPNRFIHPPSMLAMYGKR-ALVHGLVLVALND-IQDEEVFLNYRYNPNMEYPAWYTPVNQDEDLKMW 310
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: A0A0P1B5A9_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5A9_PLAHL)

HSP 1 Score: 135 bits (341), Expect = 4.400e-32
Identity = 77/211 (36.49%), Postives = 117/211 (55.45%), Query Frame = 2 
Query:  506 EVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPK---LFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            +  ++  GF   V+ESSIP AG G+ + GSAP G+ VA+YPG+V LPE+ + + Y+S+L   +N Y   R DG +ID +     P +PLA+AH +NHPP G +PNV+  A+++P       +  F+ K        E   LIPN + + P    +FG +      V  +  +A       EE+ ++YR+NP    PDWYT V+ +  + MW
Sbjct:  118 DFFQDFFGFTLKVEESSIPHAGEGVKLCGSAPIGSFVALYPGIVFLPEHYKKKHYLSEL--SNNIYARARFDGVIIDGKNETSHPRNPLAVAHKINHPPKGISPNVIGFAFEFPQ------NEPFTEK--------EFDELIPNAFVQEPSRLSMFGKRT----IVHGLAFIATANIADGEEILLNYRYNPDRPLPDWYTPVDVESDRAMW 308
[Close]
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Match: A0A8K1CCH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCH4_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 4.590e-32
Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 2 
Query:  503 KEVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHLPENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVNHPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRYHKPPK---LFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWYTAVNPKEIKKMW 1129
            ++++RE LG+   V+ SS+P AG G+ ++G  P G++VA++PG V+LPE+ +   Y+ ++   +N Y   R D  +IDA+     P +PLA+AH +NHPPAG +PNV+  +YD+P +              +     + +  IPN + + P    +FG +    A V  +  +        EE+F++YR+NP    P+WYT+V+    + MW
Sbjct:  105 RDIVRELLGYSLKVEASSVPNAGEGVKIQGRLPIGSLVALFPGAVYLPEHFKKPQYLREV--SNNVYARARFDSIIIDAKNETPSPRNPLAVAHKINHPPAGSSPNVMPFSYDFPPE--------------EPFTDPDYQQFIPNSFVEMPSRISMFGKR----ALVHGLAFITTADIEDGEELFLNYRYNPDNELPEWYTSVDADSDRAMW 296
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig547.12930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT86_ECTSI1.990e-10649.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W4GU79_9STRA1.590e-3533.14Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UXH6_9STRA2.190e-3539.55Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485L2C1_9STRA4.170e-3533.56Aste57867_14760 protein n=1 Tax=Aphanomyces stella... [more]
W2G4W0_PHYPR7.410e-3437.75Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A7S2WW23_9STRA5.920e-3336.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D0N004_PHYIT2.490e-3235.87Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A6G0XH50_9STRA3.350e-3238.97Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0P1B5A9_PLAHL4.400e-3236.49Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A8K1CCH4_PYTOL4.590e-3233.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig547contigH-paniculata_contig547:2573..8718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.7
Seed ortholog evalue4.6e-91
Seed eggNOG ortholog2880.D7FT86
Hectar predicted targeting categorymitochondrion
EggNOG OGs28PNT@1,2QWAW@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_003720.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1740
Cds size1152
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig547.12930.1prot_H-paniculata_contig547.12930.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig547 2616..8173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930567.292638-UTR-H-paniculata_contig547:2572..26151622930567.292638-UTR-H-paniculata_contig547:2572..2615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig547 2573..2615 +
1691481351.5203955-UTR-H-paniculata_contig547:2572..26151691481351.5203955-UTR-H-paniculata_contig547:2572..2615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig547 2573..2615 +
1622930567.4037762-UTR-H-paniculata_contig547:8173..87181622930567.4037762-UTR-H-paniculata_contig547:8173..8718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig547 8174..8718 +
1691481351.6035767-UTR-H-paniculata_contig547:8173..87181691481351.6035767-UTR-H-paniculata_contig547:8173..8718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig547 8174..8718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930567.3115692-CDS-H-paniculata_contig547:2615..28761622930567.3115692-CDS-H-paniculata_contig547:2615..2876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 2616..2876 +
1691481351.5334406-CDS-H-paniculata_contig547:2615..28761691481351.5334406-CDS-H-paniculata_contig547:2615..2876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 2616..2876 +
1622930567.3295014-CDS-H-paniculata_contig547:3522..36371622930567.3295014-CDS-H-paniculata_contig547:3522..3637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 3523..3637 +
1691481351.5438895-CDS-H-paniculata_contig547:3522..36371691481351.5438895-CDS-H-paniculata_contig547:3522..3637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 3523..3637 +
1622930567.34718-CDS-H-paniculata_contig547:5135..53441622930567.34718-CDS-H-paniculata_contig547:5135..5344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 5136..5344 +
1691481351.5535648-CDS-H-paniculata_contig547:5135..53441691481351.5535648-CDS-H-paniculata_contig547:5135..5344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 5136..5344 +
1622930567.362107-CDS-H-paniculata_contig547:6452..67631622930567.362107-CDS-H-paniculata_contig547:6452..6763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 6453..6763 +
1691481351.564354-CDS-H-paniculata_contig547:6452..67631691481351.564354-CDS-H-paniculata_contig547:6452..6763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 6453..6763 +
1622930567.3758507-CDS-H-paniculata_contig547:7068..71711622930567.3758507-CDS-H-paniculata_contig547:7068..7171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 7069..7171 +
1691481351.582562-CDS-H-paniculata_contig547:7068..71711691481351.582562-CDS-H-paniculata_contig547:7068..7171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 7069..7171 +
1622930567.3893926-CDS-H-paniculata_contig547:8020..81731622930567.3893926-CDS-H-paniculata_contig547:8020..8173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 8021..8173 +
1691481351.5915744-CDS-H-paniculata_contig547:8020..81731691481351.5915744-CDS-H-paniculata_contig547:8020..8173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig547 8021..8173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig547.12930.1

>prot_H-paniculata_contig547.12930.1 ID=prot_H-paniculata_contig547.12930.1|Name=mRNA_H-paniculata_contig547.12930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=384bp
MILARTLFAKLRPKRPSPREIQEKIDVSRTAALTLAYANRGLRVGVDDVG
SSIPHSVDVDRLQLEKEVKELSADEARKWVQASLNDQIVSYFKIVKEVGG
VHPQSMDSVARAISVASVSPSARQKGSVSRRSGETKGQAIERAALDSWRT
EQLKEVLRERLGFCTTVKESSIPGAGAGLFVEGSAPEGAIVAIYPGLVHL
PENLQHETYMSQLLPDDNFYLMGRADGCVIDARTRAQLPSSPLAMAHAVN
HPPAGRAPNVLQAAYDYPSKTGGGGSSLFSGKIGQCHFPEELRPLIPNRY
HKPPKLFGGKVERWAFVETVVLVACRGGVHDEEVFMDYRFNPSMRAPDWY
TAVNPKEIKKMWGSPETRPYSDLSELARRKDDD*
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mRNA from alignment at H-paniculata_contig547:2573..8718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig547.12930.1 ID=mRNA_H-paniculata_contig547.12930.1|Name=mRNA_H-paniculata_contig547.12930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6146bp|location=Sequence derived from alignment at H-paniculata_contig547:2573..8718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAAGAGCTATGATAACGGAAGTGTTGTGCTGTTCTCCGTCATGATCC
TGGCAAGGACGCTGTTTGCAAAGTTGCGACCGAAGCGCCCCAGTCCTCGT
GAAATACAAGAGAAGATTGATGTGTCTCGCACCGCTGCTCTGACTCTGGC
CTACGCGAATCGGGGCTTACGAGTTGGTGTAGATGATGTGGGTAGTAGTA
TCCCTCATAGTGTTGACGTCGATCGATTGCAGTTGGAGAAGGAGGTGAAG
GAGTTGAGCGCCGATGAGGCAAGGAAATGGGTCCAAGCTTCGCTTAATGA
CCAGGTGCATACAGGTGCATTGGATTGTCTACGTTCTGTCGCAAGTGTGG
TTTGGTAGGAGGTTGTTCAAAGGTTGTGCTCATGTGTGCAGCGTACCTGC
TGCAAAGTTAGATCGAGTACAAACAAGTCAGTAAAACAAAACTAAATTTG
AAAAATTGAACATGTTTCGTCGGTGGACTGAACTGCACAGCTCACTATTT
GCAGTTTGTAGCTTACAGTACAGCAGTGTTGGAATGTTGTGTCGTTGTAA
AATATCGAAATATCCCCCGTGTTGAAATATCATGGTGTGTTGCAGGGCTG
AAAACATACGGTATCATACTGCACAAAAAATGTAAATGCAGCAACGATTC
CAGTTGTTACGGTAATATCATATTATGCTCACGGGCTCGCTCGCTGTATA
CCTGTCCGACAGGGATGACAACAGTCTAGGTAATACTGTGTTGTCTATGT
TAACAGTTCACGTGTCTGCTGGTAAGGTACTGTGCATTTATTAACTATAT
TGTCTATTTTAGTGGCGACGCGATATGTGTGGCTGGGCGTTACCTAACTG
AATGTGTTGATTATCGGTCTGAACCTTGTATTCCGGCGTTATTTCACTGT
TCCGCCATACTTCGCCCCTCTCTCTCTTGCGCTACTGACACCGTCTGTAG
ATTGTCTCCTACTTCAAGATTGTGAAAGAGGTTGGTGGCGTTCACCCTCA
AAGCATGGACTCAGTTGCGAGAGCTATATCTGTGGCGAGCGTGTCGCCGT
CCGCTCGCCAAAAAGGTGTGTGTACGCGTGGATCAGGGGGGGGGCTGCTC
CGTGTATGCCTCACCAGTATGCCATAGTTGATACCCGATGAGGGGCTGCT
TATGCAGATGACCTCAAAACGAATTGAAACACCTTGCCACTGCCCCTAAG
TGTTTTTCGAACGGGTGCATGTCTTGAAACATGTGTAATTTCACCTCAGT
TTTTCCCGCTCTGCTATTGCTCAACTAAATTTCGATTTTTACTCCATACC
CTCTTTGCAGCTTCGTTTTAAACAAGAATGTGTTCAGTCGAGTGTAGATA
CTGCTGCTGTAGCACTGCAACCTTAGAACCACAGATATGAAGAGAGAAAT
ATCGCAATAGACACACGAGTGATCTTATACAAACCTGGTGTCATGGGTAT
GTGCGGCAGCCGAAACAAGAAGCCGGTTCAACAACAGTAAACCAGAGTAT
TTTTAGTAGCTGTCAAGCCCAAATTTATCATGGAAGCAAAAGCTGGTCTT
CACGCGGCCGCGTAGGTCCGCAGAAAACACAAGGCTGAGACCCCTGCAGG
AAGGAACCACTGAGAAATTATCATATGACGAGTGAAGTACAGGGCGTAGG
TGGTTCAGCAGAATAATTAGGTAGTATATCAAACATAACAGGCATGCTCC
AATGCAGGTGGCAATTCCATGTGCCATTAATTATCCAGCTTGTTCATACG
GAGAACGTCACTGATTGACAGGCTCAACATAACGAAGTGATCAGGACAGT
ACTTCAATACTTCCTCGTTCATATCTTGCAATTGTGATACAGTACCCACG
GGTCAAACTATTCTCGGGACATCATTTTTTGTTTTTCTGTTTTTTCGGGC
ATCGCGAGTTATCAGGGTCGAAGTTTCATCCCAAAATATGAGGACCGATA
GATATTACAGCAGTGCGCTACAGGCAATGCGGATTTTTTTCTGTTCCCAC
GATGAAATTTGAACGAGTTTCGGGCTTACCGATCGTCGGTGGTCCTACCT
TATCTCCTCCCCAGATTTTGGCTCTTCGTATTTTATTTTGATCGAACCAT
CCATAAATATCTGGTGGAAAGGGTGACGGCTTCAGTTGTCGAATTTTCAA
GAAGTTCATGGCGCTAAGCTTAAATAAGCGTGTTTTCGACAATATTGTGG
TGAACAACACCCTCAACACCCTCACCCTTCCCAAAAAAATATGTTTTTCT
CCCGTACTGTTCTCATAATACAAAATTGGAACATATTTCCATTGGGTACT
GTATCTTCATCGAACGTTAACAGACTTCTAGTGTTGATGTTTTTTCTTCA
ACGACAACCTTTGAAGCACTTCCACTTTTCAATACAACTCTCTATCCTGT
ATACACTGTCCGTACCGGCGGGGCTATATTATAGACGCTGTTTTAGATGT
TTTTTAAAGTGAGATTAGGTGAAGAGACCGGTACCCAAGGGTGAAGGATC
CAAAAAAACATTTCATGTACCACATCTCAACCCGCGGGTGACATATTAAT
TACTCTACTCTAGGCAGCGTCAGTCGGAGAAGTGGCGAGACAAAAGGCCA
GGCTATCGAGAGGGCCGCGCTGGATTCCTGGCGGACCGAACAGCTCAAAG
AGGTGCTCCGCGAGCGATTGGGCTTCTGCACTACGGTCAAGGAGTCGAGT
ATACCCGGCGCGGGTGCTGGTCTGTTCGTGGAGGGGTCGGCGCCGGAAGG
AGCCATAGTGGCTATTTACCCGGTAAGGGACATTATAAACATGGATACGC
TTCTCTTGAATGCTGTTTGTCGTGGTGCCCATTTATTTTCGGCCGATATG
TGTACCTAACATTATTCTTTCAGTGTTTCGCGAAAAACAAATTGACGGCC
CTAAGTGACGTCATCGTGGTGTTCGTCCTCATGACTTCAAGTGATTTCAA
GCATGTGTCCCATGCCATCGCAACGAGATGCGCACTCACTGTACTCACTA
TACTGCTCACTCAATAAAATGCTGAATGCTGAAGCAACATATAGTAGATA
AGTATCTACGGCGAGCTTCAGTCTTGTATTTTGTTTTATATTTTGCCTTG
AGATCACTTCTTATGGTGGGAGTTTTTCGAGATCAAGTTTTCCCTTGGCC
ATCATTTTTGGTTGTGAAAAAAAACACGCGAAAAAGGTCTCCGTACAAGT
TATGGCCGAGCTCGGAGAAAAATATCAATCAGAAATAGATCGACCGTGGA
ACTTGGGTTGGGCATGGGACGATATACATTCAAATGTCATGCATTCCACC
ACGACAAGGTGACTAGGTGCGCCGACTGTTCTTTACTGCTGCTGAGGGCG
CGCTTTGGTCTAGGCTTGTTGTCCTTCAGATCATGCACCGCATACCCATG
CTGTATGTAATCGACCCATTTCGCGAAACGTCCTTCGATGTGCAAGCGGG
ATGGACTCTAGATTGTCATCATTGTAGCCATCGTCATCCATGACAACGGC
AGCAGCATGGGACTAAAGGTCGCCATCGTTGCCCAGCGATGGGTACTCTA
GGTGCTCCTGCAAGCCTGCAGTCCCACGGCTATCGCCTCGGCATCCTGTT
GGATCGGTCTCAACATGTGATGTGTGACACATGTAACGAACAGTCAGTGT
TCGTTTTTATGTGTGTTGATTAGCTACCGTCATGATATACGTCTTCAGGA
CTCTTGTTCCCCCCAAAAGACAGTTAAAAGTGGGGGAAGATTTCGCTCAC
TTGGACCGTTTGAAGGATCATGGAGGAAATGGGGGTCATCCCCTCAATAA
AATTCCCACAATAAGAAGGAGCCTGACTAGCCAAAGTTACTGAACCCAGC
TTTCTCTCTTTCCTTCTCTCGGCAATGCAGGGCCTTGTACACCTGCCAGA
AAACTTGCAGCACGAGACCTACATGTCGCAGCTCCTGCCCGACGACAACT
TCTATCTAATGGGACGCGCAGACGGCTGTGTCATCGACGCCCGAACGCGT
GCGCAACTGCCCTCCTCGCCGCTGGCGATGGCGCATGCGGTCAACCACCC
TCCAGCAGGGCGGGCGCCGAACGTGTTGCAAGCGGCATACGACTATCCCT
CGAAGACTGGTGGAGGTGGCAGCAGTTTATTCAGTGGTAAAATAGGACAG
TGTCATTTTCCCGAGGAGTTGAGACCGCTGATTCCCAATAGGTACGGGGG
TTTTGGTGTGTGCTTTAAAGTGTTTTGTGATTGTTGTACGGAGTAAGACG
AATTAGAAGTGAGTTGTAGTTGACTCCGTGCTCTTTCGGTGTTTACAATG
TTCAAGTATATACCGGGGGCTGTTTTTAATTGTCGTGATTTTGCCGTGCT
ACGTACTGCGTAGGGGGCACGTAGGGGTCATTTTGTTTTATTTGTTTTCA
CGAGCAGTTAGAGGACGGTGCGGCCTTCCATATGTCTCGTGCGAAATACG
TACTGATTGTGCAAGTGCCTCTTCTGAACGAATACTGTATTTTCAGGTAT
CACAAGCCCCCGAAGCTGTTCGGGGGAAAGGTGGAGCGGTGGGCTTTTGT
AGAAACGGTCGTGCTCGTGGCGTGCAGAGGCGGTGTGCACGACGAGGAGG
TGAGAGTTGCACGTATTTATGTGATTAGAATATTTGTGAGACGAGTTCAA
TTTTCTAAATATGTTCGTTCGTCTTGCTGCCGAACACACCCTAGGTTTGA
AAATTTCGTAGCGTTTGTAGGTTACAAATGAGAGCATGTTCAAAACTTTG
ACAGCTGGTCGCAAAGTTTGGGAACATAGCGACTAACGTAGACCTCTGCG
CGTGATTGGTCAGGATGTCTCGACAACTTCTTGATTGGTTGACGTGTCCC
CGATATCAACTCGGTAATTAAAGAGTAGGCCCCAGCCCACCCAGTGACCG
GCTCCGTGCATTCAAGCTGTACGTCCGTTTTTCCAATACAAATATCCACA
GAGATAAATAGTTGCTCTGGTGGTTGTTTGGAGTTTTGGGATGCTGTGCG
GACAGAGTACGCGCTCGTCTACCATCCAGGGTCAGAAGCAGTTAGAGCAA
CTGATCCGAAACTCGACAGAGAATGTCATTGGACGCTTGTGTAGGGGACT
CCGGTTTAGCAACCTTAGGGACGTCAGAAGCGTACTCTCCACAAATTTTA
ACATAAACACATTATTACAAGTCAGTCAACGTCTCAGACTCCATGCTACG
TTATCTTACAAATATTGTCATGTCTCTACTCGGTTTTACGGGTTTGTTGT
TGTGCTAGACATTTGGTGATGGATATTTACCTCGAAATGGGTTTCGGCGG
GGATGGGGACGAAGCCACCCGGGGCATTTTCCGGGTCTAACCTGCATATG
TTGACGCATTTTCTGGATAAATTTCAATTCAAGCATTTCATGTAAATTGT
TGTGTTTGAGCTTTTTTTTTTCCTCCTCCCCCTTTGAAACGTTCCCAGGT
GTTTATGGATTATCGATTCAACCCCAGTATGAGGGCGCCGGACTGGTACA
CCGCCGTGAACCCTAAGGAGATCAAGAAGATGTGGGGGTCGCCGGAGACG
CGCCCGTATAGCGACCTATCAGAGCTGGCGAGAAGGAAGGACGATGATTA
GCCTGATAACATATAGTACACTGTATCCTAAATTACGCAGTCTGTTAACA
CAGTACTCTCTTCGGGTTGATGAATTTGTAATACTGAGGTAAATAGTTGA
CAAGACGGTATTTGAATCGTGTTTCGTACTGTCAATTACTTAGTTGAATA
GTTCGACCCACAAGTTAGCTCTGTTTTTTTGTTCGTACACGAGGATTGAG
TAGTGGCTGCTTTGATAAAAACAGCAGTCCAGTGGCACTTTCAGAAAAAC
TAAGCAGCTTTGTTGTAGGAGTATAGACAAGGGTTCGCCTTTCTGATGGC
TCAATAGACTACTTGCCATTTGTCGTCGGCGGTAGTTGTTCATGAAATCA
AGCATGCGGGCCCCGCCAGTACATCGATTGCATCAAGAGAATCAAGATAA
AATTGAGTTAGCGCGATCAAGACCTAGGATAGCGAACATCAGGAATGACC
CCTACCACCGCAAAGACGTGACTATATAAGAGACCGCCGTCGTACGAAGA
TTTTTTTTTATCACATCAATGTCGTCTCCTTCAGAGGGTCGGACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig547:2573..8718+

>mRNA_H-paniculata_contig547.12930.1 ID=mRNA_H-paniculata_contig547.12930.1|Name=mRNA_H-paniculata_contig547.12930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2304bp|location=Sequence derived from alignment at H-paniculata_contig547:2573..8718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCTGGCAAGGACGCTGTTTGCAAAGTTGCGACCGAAGCGCCCCAG
TCCTCGTGAAATACAAGAGAAGATTGATGTGTCTCGCACCGCTGCTCTGA
CTCTGGCCTACGCGAATCGGGGCTTACGAGTTGGTGTAGATGATGTGGGT
AGTAGTATCCCTCATAGTGTTGACGTCGATCGATTGCAGTTGGAGAAGGA
GGTGAAGGAGTTGAGCGCCGATGAGGCAAGGAAATGGGTCCAAGCTTCGC
TTAATGACCAGATGATCCTGGCAAGGACGCTGTTTGCAAAGTTGCGACCG
AAGCGCCCCAGTCCTCGTGAAATACAAGAGAAGATTGATGTGTCTCGCAC
CGCTGCTCTGACTCTGGCCTACGCGAATCGGGGCTTACGAGTTGGTGTAG
ATGATGTGGGTAGTAGTATCCCTCATAGTGTTGACGTCGATCGATTGCAG
TTGGAGAAGGAGGTGAAGGAGTTGAGCGCCGATGAGGCAAGGAAATGGGT
CCAAGCTTCGCTTAATGACCAGATTGTCTCCTACTTCAAGATTGTGAAAG
AGGTTGGTGGCGTTCACCCTCAAAGCATGGACTCAGTTGCGAGAGCTATA
TCTGTGGCGAGCGTGTCGCCGTCCGCTCGCCAAAAAGATTGTCTCCTACT
TCAAGATTGTGAAAGAGGTTGGTGGCGTTCACCCTCAAAGCATGGACTCA
GTTGCGAGAGCTATATCTGTGGCGAGCGTGTCGCCGTCCGCTCGCCAAAA
AGGCAGCGTCAGTCGGAGAAGTGGCGAGACAAAAGGCCAGGCTATCGAGA
GGGCCGCGCTGGATTCCTGGCGGACCGAACAGCTCAAAGAGGTGCTCCGC
GAGCGATTGGGCTTCTGCACTACGGTCAAGGAGTCGAGTATACCCGGCGC
GGGTGCTGGTCTGTTCGTGGAGGGGTCGGCGCCGGAAGGAGCCATAGTGG
CTATTTACCCGGCAGCGTCAGTCGGAGAAGTGGCGAGACAAAAGGCCAGG
CTATCGAGAGGGCCGCGCTGGATTCCTGGCGGACCGAACAGCTCAAAGAG
GTGCTCCGCGAGCGATTGGGCTTCTGCACTACGGTCAAGGAGTCGAGTAT
ACCCGGCGCGGGTGCTGGTCTGTTCGTGGAGGGGTCGGCGCCGGAAGGAG
CCATAGTGGCTATTTACCCGGGCCTTGTACACCTGCCAGAAAACTTGCAG
CACGAGACCTACATGTCGCAGCTCCTGCCCGACGACAACTTCTATCTAAT
GGGACGCGCAGACGGCTGTGTCATCGACGCCCGAACGCGTGCGCAACTGC
CCTCCTCGCCGCTGGCGATGGCGCATGCGGTCAACCACCCTCCAGCAGGG
CGGGCGCCGAACGTGTTGCAAGCGGCATACGACTATCCCTCGAAGACTGG
TGGAGGTGGCAGCAGTTTATTCAGTGGTAAAATAGGACAGTGTCATTTTC
CCGAGGAGTTGAGACCGCTGATTCCCAATAGGGCCTTGTACACCTGCCAG
AAAACTTGCAGCACGAGACCTACATGTCGCAGCTCCTGCCCGACGACAAC
TTCTATCTAATGGGACGCGCAGACGGCTGTGTCATCGACGCCCGAACGCG
TGCGCAACTGCCCTCCTCGCCGCTGGCGATGGCGCATGCGGTCAACCACC
CTCCAGCAGGGCGGGCGCCGAACGTGTTGCAAGCGGCATACGACTATCCC
TCGAAGACTGGTGGAGGTGGCAGCAGTTTATTCAGTGGTAAAATAGGACA
GTGTCATTTTCCCGAGGAGTTGAGACCGCTGATTCCCAATAGGTATCACA
AGCCCCCGAAGCTGTTCGGGGGAAAGGTGGAGCGGTGGGCTTTTGTAGAA
ACGGTCGTGCTCGTGGCGTGCAGAGGCGGTGTGCACGACGAGGAGGTATC
ACAAGCCCCCGAAGCTGTTCGGGGGAAAGGTGGAGCGGTGGGCTTTTGTA
GAAACGGTCGTGCTCGTGGCGTGCAGAGGCGGTGTGCACGACGAGGAGGT
GTTTATGGATTATCGATTCAACCCCAGTATGAGGGCGCCGGACTGGTACA
CCGCCGTGAACCCTAAGGAGATCAAGAAGATGTGGGGGTCGCCGGAGACG
CGCCCGTATAGCGACCTATCAGAGCTGGCGAGAAGGAAGGACGATGATTA
GGTGTTTATGGATTATCGATTCAACCCCAGTATGAGGGCGCCGGACTGGT
ACACCGCCGTGAACCCTAAGGAGATCAAGAAGATGTGGGGGTCGCCGGAG
ACGCGCCCGTATAGCGACCTATCAGAGCTGGCGAGAAGGAAGGACGATGA
TTAG
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