mRNA_H-paniculata_contig5469.12929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5469.12929.1
Unique NamemRNA_H-paniculata_contig5469.12929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5469.12929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5469contigH-paniculata_contig5469:3198..9561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006200.1
Exons2
Model size1437
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5469.12929.1prot_H-paniculata_contig5469.12929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5469 3947..9314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930567.1960018-UTR-H-paniculata_contig5469:3197..39461622930567.1960018-UTR-H-paniculata_contig5469:3197..3946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5469 3198..3946 -
1691481351.479088-UTR-H-paniculata_contig5469:3197..39461691481351.479088-UTR-H-paniculata_contig5469:3197..3946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5469 3198..3946 -
1622930567.2452245-UTR-H-paniculata_contig5469:9314..95611622930567.2452245-UTR-H-paniculata_contig5469:9314..9561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5469 9315..9561 -
1691481351.5100174-UTR-H-paniculata_contig5469:9314..95611691481351.5100174-UTR-H-paniculata_contig5469:9314..9561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5469 9315..9561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930567.215881-CDS-H-paniculata_contig5469:3946..42221622930567.215881-CDS-H-paniculata_contig5469:3946..4222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5469 3947..4222 -
1691481351.492193-CDS-H-paniculata_contig5469:3946..42221691481351.492193-CDS-H-paniculata_contig5469:3946..4222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5469 3947..4222 -
1622930567.2314358-CDS-H-paniculata_contig5469:9149..93141622930567.2314358-CDS-H-paniculata_contig5469:9149..9314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5469 9150..9314 -
1691481351.501532-CDS-H-paniculata_contig5469:9149..93141691481351.501532-CDS-H-paniculata_contig5469:9149..9314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5469 9150..9314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5469.12929.1

>prot_H-paniculata_contig5469.12929.1 ID=prot_H-paniculata_contig5469.12929.1|Name=mRNA_H-paniculata_contig5469.12929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MSRVGPFIVGIIVSQAGYVYLSDGLVGKRNRFMIEHLGAGEDDIYQTQLQ
GSAAKYLRPLVQAVGGNAGTQPMGQGMGADRGNAAQDNDIPSRFTDHSMV
TSAYKTWNATVIKASGSLVDVIYGGGDRRAAATGEGKSKTNGESSA*
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mRNA from alignment at H-paniculata_contig5469:3198..9561-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5469.12929.1 ID=mRNA_H-paniculata_contig5469.12929.1|Name=mRNA_H-paniculata_contig5469.12929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6364bp|location=Sequence derived from alignment at H-paniculata_contig5469:3198..9561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATAATATTCTACACTAATATTTTTAACTATGAGAGATACGTCACGTAT
TATCAATTACATGGGAGACTCTTCGAACAAGAAAGCCCGCGGAAATGGAG
TATGACACATCACGCACAAAATGGAAAATATCATTTCTCGTCATCACCCA
TAGCGGAACCCCGCAAAAGCCGTCTCAAGCGTCGATCGATTGACGCGGGT
GGCGTGTCCTTTTGTAGGTAATTCTCACAGCGCCAGAAAAATCAACGATG
TCTAGAGTGGGGCCGTTTATCGTGGGCATAATTGTCTCGCAGGCAGGCTA
TGTCTACCTCTCGGACGGGCTGGTGGGAAAGCGCAACCGGTTTATGATAG
AGCATCTAGGAGCTGGGGAAGATGATATTTACCAAACCCAGTTGCAAGGA
AGTGCTGCCAAGGTGAGTTAGGCGAAGAAGTGCAGTATCCGATTGCTCTC
GTATTTACCAAGCTCTGTGCTTTGGCGGTTGTCTTGGGATGTTGTTAAAT
AGGGATGAGAGGTATGCGCTGGTATGCGTTCGTGCAAGTACCAGCAGTGT
CAAGGTGCTGCCTCTTCCGTATAGTAGGTACAATTGACATGCTTCATGCT
TCGCGCTGAGCTACTATTTTAGTGTAGCTTGCAACTCTGACCCGGTACCC
GTCTGTCCGTTTTGTTGCAGTACTGTGGTGGGTTGTCCATGGATGGCTCT
ACACCCTACATTGTACGCTTGCGTGTCTGGGATGTGGGGAAGGTACAGTC
TGGAAAGACTATAGCTCACTTGGAACACTGTTTGGTGTGATGTTGAAAAT
AAGGCGGCTATGAGTGCCGGCGCTCGCTCCAACATCAACTTGCTCCGAAT
TGAGCTCCAACCCAACTGTTGGCCCGTACAGATAATTCAGTTACTGATGT
TGCCCTCTTGGACAAAGTCCGGATGCAATGATCCCGGCAAGAAACTTACT
AATTGATCGTAGTGAGGGTGTCAAGACTAAGGCTCGCTGCGTGTGAATTC
GATCGCCATCTTGCAAAAGGGACTCTCCAACAACGAAGACGAAGTTGAGG
GGGGCACGGCAGCCGAAACACAAACACTAAACACTTGTCTATGAGGGTGG
AACCTCAATGCGTGTGTTCATGGTTCGATCACTTTACCCAAGAAACAAAA
TACGAGATGGACGTTCAGACACCTTTCAATAATAAAACTGACGAAGCTGG
CCCAAGTACCAATTGATCGGGCGAGATCGGAATCTTGAGGCTTGTTTTTT
CTGCTGTCGCGGTGCATAATAGTAGAATCCTGTTGAAGCTCGCAAGGGCC
TACCTCCATTTTCATCAAACTCTGTGGCATGCTTCGTTAGGTGGAAGGGT
GCGGGTGTACGAAACAGAAGTTAGTGTAGAGTATGCGTCAGCCATATCAT
GGTTTTCCCCCAGCAAGTCTTGCGGTAGACCACACTCTCTTGAACCTATC
TGTAGAATTTCGACGAAACAAATCTGCTTTCAACGAGAATTGAACCCGGG
GTCTCCGGAGTGACATAAAAAGCACCCGTCGACATAGAACAGGTTACACA
TTGTTTTGCACAGTCACCTTCGTTCGCTGAAGTAATAGTTCCCGCAGTCG
CCAGGCTTGACGAACTAATAGAATAGTATCCGTCTTATCATCTAAAAAAA
TGCTGCAGTACATAACATCCATGGATTGTCTTCCATCCGTCGTCCAACCC
TTGGGTGGGGATTGTTCAGTTGCGTTCAATGGCAGTCATCACTGGTGATA
CGTGGTAACTTCGTGCAAACAAGCGATTGCTCCAACCCTATGGAAGATCT
GACAACGTGTTGGTGTCCGAAGATTGAGCTTGTGTCGCCCCAGTCCCTGA
TGGCGAACCTCCAACTTAGAGCACGTGGTGAGAGGCCTCTCGAAGCTTCG
CTGTGGATCTAGGGCACCAGCTTCGTAATGATTTTGCACCGTTGCCAGCG
CTTTATTATAGGTTTCAAGCAATTGCAATAGATTTCAAGCGCCATGTAGC
AAGAGGATGCTATCAAATTGGCAAATGGTTGCATTGCTACCGACGAGCTT
TTCGATTTTTTTTGCCTTGACCGACAAACCAGCATCAGTACACAGAAGCC
GATTTTTCTCCGGTCCCAAGGTGCCGATGTATGCAGTCATCACGCTCTCT
GGCTCGAAACTGATACGAGTGTACATTCCCGCGTTCAAACTTGCCGTCAA
GGTCATCGCGGCACAGGCGAGGATACTGCTATTCCCCCAGCCCTTTTCAT
CGCTATGTTCTGGTCGTACCAGCTCTTGCTTTATTCATTTTGAAAGCCAG
AAGTAGTAACAACAAAACGAGGCAACGGAAATGGCTACTTCGCTGCAGCG
TATCTTCGCACGTGCCTTGATTATCTTAGTATATTACTATTACGATGGCA
TTTTGCTATTGGTATCTCGGCCAAATCTACGCCAATATTATGTAAAATTT
AACAAGCAATGGCGCAAACGAACCGCATGAAAAATTTGGCCTCAAACAAG
GAAACAAAGGAGTGGAATAATTTATATTCCTTAACTAATGGCATGTTTTC
CACTGTTTATTTTTTTGCAGCTAACCTTAGCCCGGGGTTCGTGGACGAAA
TGTTGGAAATTTAACTGTATCGCCCCCTTGTTCTCTATGTTCTCCACAAA
CGATGGCGTGAATTACTTTCACGACCAATGCGGTCACGTGCAAAAAGACA
ACTCGAAAAATCAATATGTTCACGTCGAGGTACGCCATGTTTTCCAACGT
AGTCGCCGTTAACATTAGTCCGGTGTTGGTGAACAAAACGTTGAGACATT
TCACCATAGCTCGCCCAATTTCTCAATGTTTTCCACAAATGACGATATGC
GTTAACAACATGGCCAACGCGGTCGCGTACAAAAGGATAAATCGAAGAAC
CAAATATTCACATCGAGCTCCGCCCTATATTCCAACATGAACCTTAGCCC
AGCGCTGGCGGAGGAAACGTTTGGATATATCATCATCTCTCGCCCATTTT
CTCCTCTTTTTGTCACAAACCATAGCTTGAATGAACCACGAAGCTGCTGC
GGTCTCGGACGAAGAACAAAAACGGAAAACACATATTTTGAAGACATGTG
TTCCAACCTTGTCGCCTTTAACTGTACCCCGGTGCTGGTGGGCAAAACGT
TTGGACATGTCATGATAGCTTGCCCATTTTCTCGAGCTGTCCCACAAACG
ATGGACTAAATGAATTCCACAGCTCAGGCGGTCTTGTATTAAAACACAAG
CGGAAAACATGTTTGCAGTTAAGTTATGCTATATTTTTCAACATTGTCGC
CGTTATAACCGTAGCTCGGCGCTTGTGACAAAAAAAGGTCAAGAAATTGA
ACGCCGCTCGCATATTTTCTAGAGCTGTTCCACAAACGATGGTTTGGATG
AACCGCTTAGCCTATGCGGTCTTGTGCAAAAAAAAAAGACAAATTTCGCA
GTCAAGTTATGCTATATTTTTCAACATTCTCGTCATCAAGCGTAGCCCAG
CGCTGGTGACAAAAAAGTCAAGAATGTCGACGCTGCTCGGCCATTTTCTC
GAGCTGTTGCACAAACGATGGCTTGAATGAACCGCATAGCCCATACGGTC
TTGTACGATAAATTAAAAACGGGAAACACATAGATTACCGTCATGTTAGG
TTTGATTTCACAGCCTATTCTTACCCGTTGTGCCTGTGCAGGCTCAACTC
CGGGTATCCATTTTCAAAAGGGCGTATCACAAGAACTGGATCGAAAAAAA
TAAATCTAGCTGGTACATATACTCCGTTAGGTCATCAGCTTTCTTCTGGA
TTTGGTTCTGCATGTTGGTTCGCACAAATGGGTTTCAATTTTCCATGCAC
CTGAAAATGAAGTATGTTTTCGAAGTGTCCACTTTTGTCCCGCGCTGCTT
TGTGGTGTGTTTTGTGCCTCACTATGAGATCGGCACTATCTTCTGGAAGC
TATAACCACCAGCTTTCATTTGATACCACCAACTATACCATGGTTTTCTT
GTGTGTGCCTATTGATGAATGCAAATGGCCTCGTTCCAAACTCCCATCTC
GCGAACAACGTGCAAGGTAGAAGAAATGAAAATCGTCATTTTTCCTTCTC
AACCATGTAAAAACATATAATTTTCCTTCCAATGACAGCGTGCCTCCGTG
ATAATGTTCTGTTCTACAGTGATGTGTTAAACATTGACGTTCCTGTAGCT
GCGTTGGGATTTTTGAAGACCCTGGTCGTCGATAACCCCGACCTCGAGGA
TCGCGAACCCGGTGCACTGAGCAGAAGCAGGTGTTAGTGTCTACAACTCG
CCTATGATTTCTGGGTTATATAACCAAAACCAATTTCTGTGTGTCCGTCT
AATACACTATTTTCTTGTCCTCCTGCCCACGCACAACGCAGTCAACTCGT
ATGCGGCAGAAGAAAAAGTTCCTAGCTGCAGTTGCCACAACTATAGTCAG
CAACGCTTTTCTATGCACGTTTAGTACTTCCTGTGCCAGGAATAGTACAA
ACAGCGGTGTGTGTCGGACGAAGATAACACAGTCCTCCTTGAAAACGGCG
TCTTCGTGCAGCCAGTAGATGGGTATATTAAGGAAAACAATCCAAAAAAT
GATAACAGCAGACCGAATCTAGGGGAAGATCGAACACTGAAAATCTGGGC
ATTACTGATGCTGCTGCTGCCGTGTGCCCATGTTGGTAAGCATACTTTCA
TGGACACCCCGACATCAGCACACAGAGCTCAGTTACACCGACAGGAATGT
CACACATAGCAGCAGCAATGCTCAGATTTTTTGGTGTGCGGTCTTGCCCT
GGATCCGGTGTGTGATTACTGATCGTTCGACCTTTTCATTTCATCATATT
CCTGTACTGGGATTGCAGATCTGTTCTTCGCAATAAGGGCGGTACTGCGT
CTGTGCGAAGGGCACCAACACTTGCGCTGCATTATTCTTGGCACGGCAAA
AACATAAATACCCCAAGAGGTACACACGAACACGCCCAAGTCGACTGCGT
TGAGCTGGGGCAGCGAAGAAAAGAGAATGATTTTTCATACCGACACATAA
CAGTACGTTCTCTCCTTTTGTAGCCCTGGAATCACACCGGATATATGCAT
GCTTGTGTATCCCGATACTTGTGCCTGTTTCTGTTCACCGTGTCGGCGTT
CCAAGCAATAGATTTGGAGTTCATTCTTGGAAGTGAACTCTGTATTCTCC
ATAATGGTTCCCGTCCTTGGCATTTTTTTTCGCGATTGAACGTTGGCCTG
CCACCCAATATGTTGAACGCCACTCTTTCCTATGCCCACCTCCCTACTAC
ATGTTTTTGCAATTTGTTTTTGTTCAATTGGCCAATTAGTATCTTCGCCC
GCTCGTGCAGGCGGTAGGGGGAAATGCAGGAACACAACCAATGGGCCAGG
GTATGGGTGCGGATCGAGGAAACGCCGCACAAGACAACGATATCCCATCT
CGATTCACGGACCACAGCATGGTAACTAGCGCGTACAAGACCTGGAACGC
CACAGTTATAAAGGCCTCCGGCTCGTTGGTTGACGTGATTTACGGCGGTG
GCGATCGAAGGGCGGCCGCTACAGGGGAGGGAAAATCCAAAACTAATGGG
GAGTCTTCTGCATGAGGAGCTACGAAGTGCCTCCCAACGGCCTATTATTG
CTTGGGTGTTGACCCAGTCGAGTTAGTTTCACACTTAGGCGGGTGTTTCT
GTGCGTGATGTTGGTAGACTCAGCGGGACTTGAGCATGTCATGATCGTAT
TGTATTTTTTTATGTTATGGGGTTGATCTTTCTTCACCCTGTGCGTTCAA
TCTTGACCGGTAAATTGGTTGCCGATTGGTTTCGAGAAGAATCGAAATGC
GAACCCAGGGAAGTAGGCAACACGGTATAGGTGTATTTGGGGGGGTTTGT
ACGATACCCAGGTTGGCCTCTGACAAGCCGTTGATGTTTGCGTTCGGTGG
AAAGTTGATAATGGAGCTCCACGTATACTAATACAATTTAGAAGTTGACG
TACAAAAGTGTTTTGTCACTCGGCGCCCACAGGACAGTTTTGAGACGGCA
ACAAAGGGCCTTTGAATGAGTACAGCGAGCAAGATATATCTACTCCCATA
GCTGTGTGTATGTACCAGAACTTTGTACAGAGAGAAAGGGAAACGGTCGG
CCAATCCGAATAACAGCAGGCCTGTGACATCGCGCTAGGTGCCTCCGCCA
GAACTCGTGATTGCATCATTTCTAGTGGTGGGTTATGCTGTTATACCACA
TCACTTGCGTTGTGTGTCTGTACTTCGATGCTCACCCACCACATTGAAAG
TGGCCTTCTAGATATAGAAAAAGCTGCGGTTCGAGTCGAATCGTCGCGTA
ACAAACCCCGCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5469:3198..9561-

>mRNA_H-paniculata_contig5469.12929.1 ID=mRNA_H-paniculata_contig5469.12929.1|Name=mRNA_H-paniculata_contig5469.12929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig5469:3198..9561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTAGAGTGGGGCCGTTTATCGTGGGCATAATTGTCTCGCAGGCAGG
CTATGTCTACCTCTCGGACGGGCTGGTGGGAAAGCGCAACCGGTTTATGA
TAGAGCATCTAGGAGCTGGGGAAGATGATATTTACCAAACCCAGTTGCAA
GGAAGTGCTGCCAAGATGTCTAGAGTGGGGCCGTTTATCGTGGGCATAAT
TGTCTCGCAGGCAGGCTATGTCTACCTCTCGGACGGGCTGGTGGGAAAGC
GCAACCGGTTTATGATAGAGCATCTAGGAGCTGGGGAAGATGATATTTAC
CAAACCCAGTTGCAAGGAAGTGCTGCCAAGTATCTTCGCCCGCTCGTGCA
GGCGGTAGGGGGAAATGCAGGAACACAACCAATGGGCCAGGGTATGGGTG
CGGATCGAGGAAACGCCGCACAAGACAACGATATCCCATCTCGATTCACG
GACCACAGCATGGTAACTAGCGCGTACAAGACCTGGAACGCCACAGTTAT
AAAGGCCTCCGGCTCGTTGGTTGACGTGATTTACGGCGGTGGCGATCGAA
GGGCGGCCGCTACAGGGGAGGGAAAATCCAAAACTAATGGGGAGTCTTCT
GCATGATATCTTCGCCCGCTCGTGCAGGCGGTAGGGGGAAATGCAGGAAC
ACAACCAATGGGCCAGGGTATGGGTGCGGATCGAGGAAACGCCGCACAAG
ACAACGATATCCCATCTCGATTCACGGACCACAGCATGGTAACTAGCGCG
TACAAGACCTGGAACGCCACAGTTATAAAGGCCTCCGGCTCGTTGGTTGA
CGTGATTTACGGCGGTGGCGATCGAAGGGCGGCCGCTACAGGGGAGGGAA
AATCCAAAACTAATGGGGAGTCTTCTGCATGA
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