mRNA_H-paniculata_contig54684.12928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54684.12928.1
Unique NamemRNA_H-paniculata_contig54684.12928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54684.12928.1 vs. uniprot
Match: UPI001C79D330 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C79D330)

HSP 1 Score: 51.6 bits (122), Expect = 1.320e-5
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:    4 EIWVCDNGATKHMPHDPGIRCNYQKCR-GRVRLADGNDLPIEGVGVLCIHFRFDSKVVLMKLAQVAHVPFLSHHLLSFGRFANSGH 258
            E WV D+GA+ H      I  NY     G+V LADG  L IEG+G + I+    S  +L K   V HVP L  +L+S G+    GH
Sbjct:  420 ESWVLDSGASFHTTAHREIMQNYVTGDFGKVYLADGEALEIEGMGDVPINLPNGSAWLLQK---VRHVPKLMRNLISVGQLDADGH 502
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BLAST of mRNA_H-paniculata_contig54684.12928.1 vs. uniprot
Match: A0A6G0WQ54_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ54_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.150e-5
Identity = 24/81 (29.63%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:   13 VCDNGATKHMPHDPGIRCNYQKCRGRVRLADGNDLPIEGVGVLCIHFRFDSKVVLMKLAQVAHVPFLSHHLLSFGRFANSG 255
            + D+GAT H   D       +   G+VR+A+G+D+ IEG G + +     S +V +++  V ++P +  +L S  R    G
Sbjct:  233 ILDSGATDHYCKDISWFTTLEPFTGKVRVANGDDMNIEGRGTIELEMNTPSGIVPIRMTDVMYIPSIQFNLFSLSRVIRYG 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54684.12928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C79D3301.320e-540.70Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A6G0WQ54_9STRA6.150e-529.63Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54684contigH-paniculata_contig54684:91..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930567.150335-CDS-H-paniculata_contig54684:90..3481622930567.150335-CDS-H-paniculata_contig54684:90..348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54684 91..348 -
1691481351.467941-CDS-H-paniculata_contig54684:90..3481691481351.467941-CDS-H-paniculata_contig54684:90..348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54684 91..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54684.12928.1prot_H-paniculata_contig54684.12928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54684 91..348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54684.12928.1

>prot_H-paniculata_contig54684.12928.1 ID=prot_H-paniculata_contig54684.12928.1|Name=mRNA_H-paniculata_contig54684.12928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
GEIWVCDNGATKHMPHDPGIRCNYQKCRGRVRLADGNDLPIEGVGVLCIH
FRFDSKVVLMKLAQVAHVPFLSHHLLSFGRFANSGH
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mRNA from alignment at H-paniculata_contig54684:91..348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54684.12928.1 ID=mRNA_H-paniculata_contig54684.12928.1|Name=mRNA_H-paniculata_contig54684.12928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig54684:91..348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGATCTGGGTCTGTGATAATGGGGCAACGAAGCACATGCCTCATGA
CCCTGGTATTCGTTGTAATTATCAGAAATGTAGAGGGCGTGTTCGCCTCG
CTGATGGTAATGATCTCCCTATCGAAGGAGTTGGAGTTTTATGCATCCAC
TTTCGTTTTGACTCTAAAGTAGTATTGATGAAATTAGCTCAAGTTGCTCA
CGTGCCGTTTCTGAGTCATCACCTCCTATCTTTCGGTAGATTCGCGAACT
CTGGTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig54684:91..348-

>mRNA_H-paniculata_contig54684.12928.1 ID=mRNA_H-paniculata_contig54684.12928.1|Name=mRNA_H-paniculata_contig54684.12928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig54684:91..348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGATCTGGGTCTGTGATAATGGGGCAACGAAGCACATGCCTCATGA
CCCTGGTATTCGTTGTAATTATCAGAAATGTAGAGGGCGTGTTCGCCTCG
CTGATGGTAATGATCTCCCTATCGAAGGAGTTGGAGTTTTATGCATCCAC
TTTCGTTTTGACTCTAAAGTAGTATTGATGAAATTAGCTCAAGTTGCTCA
CGTGCCGTTTCTGAGTCATCACCTCCTATCTTTCGGTAGATTCGCGAACT
CTGGTCACGGAGAGATCTGGGTCTGTGATAATGGGGCAACGAAGCACATG
CCTCATGACCCTGGTATTCGTTGTAATTATCAGAAATGTAGAGGGCGTGT
TCGCCTCGCTGATGGTAATGATCTCCCTATCGAAGGAGTTGGAGTTTTAT
GCATCCACTTTCGTTTTGACTCTAAAGTAGTATTGATGAAATTAGCTCAA
GTTGCTCACGTGCCGTTTCTGAGTCATCACCTCCTATCTTTCGGTAGATT
CGCGAACTCTGGTCAC
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