mRNA_H-paniculata_contig5468.12927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A835YSV4_9STRA (GB1/RHD3-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV4_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.530e-11 Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 2
Query: 230 AKGVAIATDTADEDDGFLTFCTDFNA-GLPEALSAAACRDYRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWIDL--QLCSPP 508
A A + + D GF T C D A +P S +DY VVA+TGCQ SGKS+LLN LFG+ FPV E P+RTT+G W+DL Q SPP
Sbjct: 33 AGSAAASAANSSADSGFFTMCVDLQALEVPRGAS----QDYLVVAITGCQGSGKSSLLNELFGSTFPVQEGK----PRRTTMGCWVDLAEQHPSPP 120
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: K8YT03_NANGC (Gtp-binding protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YT03_NANGC) HSP 1 Score: 59.7 bits (143), Expect = 1.410e-7 Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 2
Query: 347 YRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWIDL 490
Y VVA+ G Q SGKSTLLNAL+GT FPVLE + +RTT G W+D+
Sbjct: 12 YTVVAIVGPQASGKSTLLNALYGTRFPVLEVGNVGVGRRTTQGVWVDM 59
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A4D9D2G8_9STRA (GB1/RHD3-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2G8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.590e-6 Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 2
Query: 347 YRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWIDL 490
Y VVA+ G Q SGKSTLLNAL+GT FPVLE + +RTT G W+D+
Sbjct: 171 YTVVAIVGPQASGKSTLLNALYGTRFPVLEVGNVGVGRRTTQGVWVDM 218
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A6B2KXY6_9EUKA (Protein SEY1 homolog n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXY6_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 1.600e-6 Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 2
Query: 344 DYRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWI 484
DY +VAV GCQ SGKSTLLN LFGT F VL+ ++ + Q+TT+G W+
Sbjct: 40 DYYLVAVLGCQSSGKSTLLNLLFGTNFQVLDVSKTKVRQQTTLGIWL 86
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A8J5CJ72_9ASCO (Protein n=1 Tax=Yarrowia sp. B02 TaxID=2768839 RepID=A0A8J5CJ72_9ASCO) HSP 1 Score: 58.2 bits (139), Expect = 5.560e-6 Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 2
Query: 272 DGFLTFCTDFNAGLPEALSAAACRDYRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWI 484
DG F TD +A + A DY VVAV G Q +GKSTLLNALFGT F V+ +T Q+TT G W+
Sbjct: 359 DGNKDFSTDVSAYFKKVHMDRAGLDYHVVAVFGSQSTGKSTLLNALFGTRFDVMN---ETARQQTTKGIWM 426
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: D8LCC3_ECTSI (RHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC3_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 6.450e-6 Identity = 31/48 (64.58%), Postives = 32/48 (66.67%), Query Frame = 2
Query: 281 LTFCTD-FNAGLPEALSAAACRDYRVVAVTGCQCSGKSTLLNALFGTG 421
+T C D L A DYRVVAVTGCQCSGKSTLLNALFGTG
Sbjct: 1 MTGCGDAVRQELRPCKKLGASHDYRVVAVTGCQCSGKSTLLNALFGTG 48
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A2P6NS68_9EUKA (Protein SEY1 homolog n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NS68_9EUKA) HSP 1 Score: 57.0 bits (136), Expect = 1.460e-5 Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 2
Query: 344 DYRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWI 484
DY VVA+ GCQ SGKSTLLN LFGT FPV+E +E +TT G W+
Sbjct: 43 DYFVVAILGCQSSGKSTLLNLLFGTTFPVMEASEGRT--QTTQGVWM 87
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A7S2ZZA6_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZZA6_9RHOD) HSP 1 Score: 55.8 bits (133), Expect = 1.900e-5 Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 2
Query: 344 DYRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAW 481
DY VVAV GCQ SGKSTLLN +FGT FPVL+ +RTT G W
Sbjct: 30 DYGVVAVIGCQSSGKSTLLNRVFGTDFPVLD-VNKAGRRRTTTGVW 74
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A098VRI2_9MICR (Protein SEY1 n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VRI2_9MICR) HSP 1 Score: 55.1 bits (131), Expect = 5.710e-5 Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 2
Query: 344 DYRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWI 484
DY+V+AV G Q SGKSTLLNALFGT FPV+ ++ P +G W+
Sbjct: 187 DYKVIAVFGAQSSGKSTLLNALFGTAFPVMR--DEVFPHPLVLGIWL 231
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Match: A0A138ZZ08_GONPJ (Protein SEY1 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZZ08_GONPJ) HSP 1 Score: 54.3 bits (129), Expect = 9.800e-5 Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 2
Query: 299 FNAGLPEALS-----AAACRDYRVVAVTGCQCSGKSTLLNALFGTGFPVLERAEDTLPQRTTVGAWIDLQLCSP 505
FNA +A++ + A DY V+AV G Q +GKSTLLN LFGTGF V++ A+ ++TT G W+ + P
Sbjct: 40 FNAATSDAIANTFRLSEAGFDYNVLAVFGSQSTGKSTLLNKLFGTGFAVMDSAQR---RQTTKGIWLSRPVSHP 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5468.12927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5468.12927.1 >prot_H-paniculata_contig5468.12927.1 ID=prot_H-paniculata_contig5468.12927.1|Name=mRNA_H-paniculata_contig5468.12927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp MNCRQQQTGCYRVGVVVVNFRRALCVLSFLASVLASSNNGHQPPAAAATAback to top mRNA from alignment at H-paniculata_contig5468:4449..7380- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5468.12927.1 ID=mRNA_H-paniculata_contig5468.12927.1|Name=mRNA_H-paniculata_contig5468.12927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2932bp|location=Sequence derived from alignment at H-paniculata_contig5468:4449..7380- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5468:4449..7380- >mRNA_H-paniculata_contig5468.12927.1 ID=mRNA_H-paniculata_contig5468.12927.1|Name=mRNA_H-paniculata_contig5468.12927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig5468:4449..7380- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |