mRNA_H-paniculata_contig54677.12926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54677.12926.1
Unique NamemRNA_H-paniculata_contig54677.12926.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 8.470e-42
Identity = 94/247 (38.06%), Postives = 135/247 (54.66%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKD----TYRMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGAS----------------------IFTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLF 663
            A   GL P G+  L+Q+V +  F+ FRR + GDPPA+V P+ V +   A+  +AR R  + DK +WL      L  +G+V+ N QA ++S  M  PK+     TYR V D+RAVN  +  S  PM +LE   + ++ A+                      IFTM+   G+Y+P RVP+GVLNATSY+QGTM  +L  L    C VWVDDI  W  T ++L+  L ++L R +  G++ A HK   +
Sbjct:  609 AADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFY 851          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.800e-38
Identity = 99/246 (40.24%), Postives = 132/246 (53.66%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALS-GDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTYRMVADYRAVNSLV--APSAMPMLNLEEIGRGMAGAS----------------------IFTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLF 663
            A   GL    +  L+ I+ +  ++AFRR L  GDPPA+VEPL V +   AR  +ARPR  +  K  WL       A +G+VF N QA ++S AMA PKK  YR+V+D+RA N  V   P  MP  N E     ++ A                       IFT+ T  G+YTP RVP+G+LNATSYFQ T+  +L GL    C VWVDD+  W     +L+  L ++L+RL+  G+Y A HK   F
Sbjct:  717 AAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMP--NPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFF 949          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.830e-30
Identity = 83/255 (32.55%), Postives = 124/255 (48.63%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASI----------------------FTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
            AR +GL   G+  L++I++     +FR     DPP  V PL V V  +A+  +A+PR  S D   +LD+H  KL + G+VF N ++R++S    V KK+         RM  D R VN        PM  LE +   + GA +                      FT +T +G+YTPTRVP G  +A +Y QG + ++   LL      W+DDI  +A +  EL++ L  VL R +V G+     K + F  E++
Sbjct:   44 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVK 297          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.780e-29
Identity = 82/255 (32.16%), Postives = 123/255 (48.24%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASI----------------------FTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
            AR +GL   G+  L++I++     +FR     DPP  V PL V V  +A+  +A+PR  S D   +LD+H  KL + G+VF N ++R++S    V KK+         RM  D R VN        P+  LE +   + GA +                      FT +T +G+YTPTRVP G  +A +Y QG + ++  GLL      W+DDI  +A +  EL+  L  VL R +  G+     K + F  E++
Sbjct:  482 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTLLDQVLARCEAYGLKLHAKKCEFFEIEVK 735          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.260e-29
Identity = 78/246 (31.71%), Postives = 118/246 (47.97%), Query Frame = 1
Query:   28 GITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASI----------------------FTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
            G+  L++I++     +FR     DPP  V PL V V  +A+  +A+PR  S D   +LD+H  KL + G+VF N ++R++S    V KK+         RM  D R VN        P+  LE +   + GA +                      FT +T +G+YTPTRVP G  +A +Y QG + ++  GLL      W+DDI  +A +  EL+  L  VL R +  G+     K + F  E++
Sbjct:   18 GVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVK 262          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 9.410e-29
Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 1
Query:   13 GLPPNGITELKQIVMNSHFHAFRRALS-GDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTYRMVADYRAVNSLV--APSAMPM--LNLEEIGRGMAGAS------------------IFTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGI 633
            GL    +  L+ I+    ++AFR  +  GDPPA+VEPL V +   A   +ARPR  +  K  WL         +G+VF N QA  +S AMA PKK  YR+++D+RA N+ V   P  MP    ++ +        S                  IFT+ T +G++TP RVP+G+LNATSYFQ T+  +L GL    C VWVD +        +L+  L +++ERL   G+
Sbjct:  495 GLDEPHVGRLRSII-RERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGL 720          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.770e-28
Identity = 81/255 (31.76%), Postives = 123/255 (48.24%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
            AR +GL   G+  L++I++     +FR     DPP  V PL V V  +A+  +A+PR  S +   +LD+H  KL + G+V  N ++R++S    V KK+         RM  D R VN        PM  LE +   + GA +F                      T +T +G+YTPTRVP G  +A +Y QG + ++   LL     VW+DDI  +A + +EL++ L  VL R +  G+     K   F  E++
Sbjct:  403 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTKAQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVK 656          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.650e-27
Identity = 81/255 (31.76%), Postives = 122/255 (47.84%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
            AR +GL   G+  L++I++     +FR     DPP  V PL V V  +A+  +A+PR  S D   +LD+H  KL + G+VF N ++R++S    V KK+         RM  D R VN        PM  LE +   + GA +F                      T +T +G+YTPTRVP G  +A +Y QG + ++    L      W+DDI  +A +  EL++ L  VL R +  G+     K + F  E++
Sbjct:  311 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVK 564          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.200e-27
Identity = 80/250 (32.00%), Postives = 119/250 (47.60%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLF 663
            AR +GL   G+  L++I++     +FR     DPP  V PL V V  +A+  +A+PR  S D   +LD+H  KL + G+VF N ++R++S    V KK+         RM  D R VN        PM  LE +   + GA +F                      T +T +G+YTPTRVP G  +A +Y QG + ++    L      W+DDI  +A +  EL++ L  VL R +  G+     K + F
Sbjct:  446 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFF 694          
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3VFD8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFD8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.600e-27
Identity = 82/251 (32.67%), Postives = 121/251 (48.21%), Query Frame = 1
Query:    1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFR 666
            AR +GL   G+  L++I++     +FR     DPP  V PL V V  +A+  +A+PR  S D   +LD+H  KL + G+VF N ++R++S    V KK+         RM  D R VN        PM  LE +   + GA +F                      T +T +G+YTPTRVP G  +A +Y QG + ++    L      W+DDI  +A +  EL++ L  VL R +  G+   +H  KL R
Sbjct:  446 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGL--KLHAKKLVR 693          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE8.470e-4238.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE4.800e-3840.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3GM82_9STRA6.830e-3032.55Reverse transcriptase domain-containing protein (F... [more]
A0A6A3YWA9_9STRA3.780e-2932.16Reverse transcriptase domain-containing protein n=... [more]
A0A6G0NWQ3_9STRA9.260e-2931.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCK9_9PHAE9.410e-2936.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4WWJ1_9STRA4.770e-2831.76Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6G0MLJ8_9STRA1.650e-2731.76Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3Q7S3_9STRA3.200e-2732.00Uncharacterized protein n=6 Tax=Phytophthora fraga... [more]
A0A6A3VFD8_9STRA3.600e-2732.67Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54677contigH-paniculata_contig54677:5..748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog67593.Physo134318
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition
EggNOG OGs2QT1S@2759,COG2801@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size678
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54677.12926.1prot_H-paniculata_contig54677.12926.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54677 59..598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930566.9374118-UTR-H-paniculata_contig54677:4..581622930566.9374118-UTR-H-paniculata_contig54677:4..58Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54677 5..58 +
1691481351.385302-UTR-H-paniculata_contig54677:4..581691481351.385302-UTR-H-paniculata_contig54677:4..58Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54677 5..58 +
1622930567.0307233-UTR-H-paniculata_contig54677:598..7481622930567.0307233-UTR-H-paniculata_contig54677:598..748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54677 599..748 +
1691481351.42442-UTR-H-paniculata_contig54677:598..7481691481351.42442-UTR-H-paniculata_contig54677:598..748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54677 599..748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930567.0010028-CDS-H-paniculata_contig54677:58..4091622930567.0010028-CDS-H-paniculata_contig54677:58..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54677 59..409 +
1691481351.4039931-CDS-H-paniculata_contig54677:58..4091691481351.4039931-CDS-H-paniculata_contig54677:58..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54677 59..409 +
1622930567.013479-CDS-H-paniculata_contig54677:475..5981622930567.013479-CDS-H-paniculata_contig54677:475..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54677 476..598 +
1691481351.4137738-CDS-H-paniculata_contig54677:475..5981691481351.4137738-CDS-H-paniculata_contig54677:475..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54677 476..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54677.12926.1

>prot_H-paniculata_contig54677.12926.1 ID=prot_H-paniculata_contig54677.12926.1|Name=mRNA_H-paniculata_contig54677.12926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLD
KHFTKLAQVGMVFANPQARFSSVAMAVPKKDTYRMVADYRAVNSLVAPSA
MPMLNLEEIGRGMAGASIFTMVTAKGVYTPTRVPEGVLNATSYFQGTMGD
VLAGLLE*
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mRNA from alignment at H-paniculata_contig54677:5..748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54677.12926.1 ID=mRNA_H-paniculata_contig54677.12926.1|Name=mRNA_H-paniculata_contig54677.12926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=744bp|location=Sequence derived from alignment at H-paniculata_contig54677:5..748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGGACCGAGGGTTTGCCGCCGAACGGAATCACGGAGTTAAAACAAAT TGTGATGAACTCCCACTTCCATGCGTTTCGGCGGGCGCTGAGCGGGGATC CACCGGCGGACGTGGAACCGCTGTGGGTGCATGTACCCGCGGACGCGCGG GCCGGCCGGGCACGGCCGCGCCCGATGTCGCGCGACAAGGCGGAATGGCT GGATAAGCATTTCACGAAGCTGGCACAGGTAGGTATGGTGTTCGCAAACC CCCAGGCAAGGTTCAGCAGCGTGGCGATGGCAGTGCCCAAGAAGGACACC TATCGAATGGTGGCCGACTACCGCGCAGTAAACAGCCTGGTCGCGCCCTC GGCGATGCCGATGCTAAACTTGGAGGAGATCGGGCGAGGCATGGCGGGAG CCAGCGTGTTCTGCAGGCTGGATCTGCTACAGGGCTACTGGCAGATGCCC CTCGATCCTCAAGCGCAAGAGATCTTCACGATGGTCACGGCCAAGGGGGT ATACACGCCTACCAGAGTTCCTGAGGGAGTGCTAAATGCGACTAGTTATT TCCAGGGGACGATGGGAGACGTACTGGCAGGCTTGCTTGAATAACTCTGC GAAGTATGGGTTGATGACATAGGAATATGGGCCGGTACGTGGCAGGAACT GATGCGGAGACTGCGGGTGGTGCTGGAGCGGCTACAGGTACGCGGTATTT ATGCCGCGGTTCACAAGGCGAAGCTGTTTCGGCGGGAGATGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig54677:5..748+

>mRNA_H-paniculata_contig54677.12926.1 ID=mRNA_H-paniculata_contig54677.12926.1|Name=mRNA_H-paniculata_contig54677.12926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig54677:5..748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTCCCACTTCCATGCGTTTCGGCGGGCGCTGAGCGGGGATCCACC
GGCGGACGTGGAACCGCTGTGGGTGCATGTACCCGCGGACGCGCGGGCCG
GCCGGGCACGGCCGCGCCCGATGTCGCGCGACAAGGCGGAATGGCTGGAT
AAGCATTTCACGAAGCTGGCACAGGTAGGTATGGTGTTCGCAAACCCCCA
GGCAAGGTTCAGCAGCGTGGCGATGGCAGTGCCCAAGAAGGACACCTATC
GAATGGTGGCCGACTACCGCGCAGTAAACAGCCTGGTCGCGCCCTCGGCG
ATGCCGATGCTAAACTTGGAGGAGATCGGGCGAGGCATGGCGGGAGCCAG
CATGAACTCCCACTTCCATGCGTTTCGGCGGGCGCTGAGCGGGGATCCAC
CGGCGGACGTGGAACCGCTGTGGGTGCATGTACCCGCGGACGCGCGGGCC
GGCCGGGCACGGCCGCGCCCGATGTCGCGCGACAAGGCGGAATGGCTGGA
TAAGCATTTCACGAAGCTGGCACAGGTAGGTATGGTGTTCGCAAACCCCC
AGGCAAGGTTCAGCAGCGTGGCGATGGCAGTGCCCAAGAAGGACACCTAT
CGAATGGTGGCCGACTACCGCGCAGTAAACAGCCTGGTCGCGCCCTCGGC
GATGCCGATGCTAAACTTGGAGGAGATCGGGCGAGGCATGGCGGGAGCCA
GCATCTTCACGATGGTCACGGCCAAGGGGGTATACACGCCTACCAGAGTT
CCTGAGGGAGTGCTAAATGCGACTAGTTATTTCCAGGGGACGATGGGAGA
CGTACTGGCAGGCTTGCTTGAATAAATCTTCACGATGGTCACGGCCAAGG
GGGTATACACGCCTACCAGAGTTCCTGAGGGAGTGCTAAATGCGACTAGT
TATTTCCAGGGGACGATGGGAGACGTACTGGCAGGCTTGCTTGAATAA
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