mRNA_H-paniculata_contig54677.12926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 161 bits (407), Expect = 8.470e-42 Identity = 94/247 (38.06%), Postives = 135/247 (54.66%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKD----TYRMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGAS----------------------IFTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLF 663
A GL P G+ L+Q+V + F+ FRR + GDPPA+V P+ V + A+ +AR R + DK +WL L +G+V+ N QA ++S M PK+ TYR V D+RAVN + S PM +LE + ++ A+ IFTM+ G+Y+P RVP+GVLNATSY+QGTM +L L C VWVDDI W T ++L+ L ++L R + G++ A HK +
Sbjct: 609 AADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFY 851
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 150 bits (379), Expect = 4.800e-38 Identity = 99/246 (40.24%), Postives = 132/246 (53.66%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALS-GDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTYRMVADYRAVNSLV--APSAMPMLNLEEIGRGMAGAS----------------------IFTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLF 663
A GL + L+ I+ + ++AFRR L GDPPA+VEPL V + AR +ARPR + K WL A +G+VF N QA ++S AMA PKK YR+V+D+RA N V P MP N E ++ A IFT+ T G+YTP RVP+G+LNATSYFQ T+ +L GL C VWVDD+ W +L+ L ++L+RL+ G+Y A HK F
Sbjct: 717 AAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMP--NPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFF 949
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA) HSP 1 Score: 124 bits (312), Expect = 6.830e-30 Identity = 83/255 (32.55%), Postives = 124/255 (48.63%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASI----------------------FTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
AR +GL G+ L++I++ +FR DPP V PL V V +A+ +A+PR S D +LD+H KL + G+VF N ++R++S V KK+ RM D R VN PM LE + + GA + FT +T +G+YTPTRVP G +A +Y QG + ++ LL W+DDI +A + EL++ L VL R +V G+ K + F E++
Sbjct: 44 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVK 297
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.780e-29 Identity = 82/255 (32.16%), Postives = 123/255 (48.24%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASI----------------------FTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
AR +GL G+ L++I++ +FR DPP V PL V V +A+ +A+PR S D +LD+H KL + G+VF N ++R++S V KK+ RM D R VN P+ LE + + GA + FT +T +G+YTPTRVP G +A +Y QG + ++ GLL W+DDI +A + EL+ L VL R + G+ K + F E++
Sbjct: 482 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTLLDQVLARCEAYGLKLHAKKCEFFEIEVK 735
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA) HSP 1 Score: 119 bits (297), Expect = 9.260e-29 Identity = 78/246 (31.71%), Postives = 118/246 (47.97%), Query Frame = 1
Query: 28 GITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASI----------------------FTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
G+ L++I++ +FR DPP V PL V V +A+ +A+PR S D +LD+H KL + G+VF N ++R++S V KK+ RM D R VN P+ LE + + GA + FT +T +G+YTPTRVP G +A +Y QG + ++ GLL W+DDI +A + EL+ L VL R + G+ K + F E++
Sbjct: 18 GVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVK 262
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE) HSP 1 Score: 123 bits (309), Expect = 9.410e-29 Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 13 GLPPNGITELKQIVMNSHFHAFRRALS-GDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTYRMVADYRAVNSLV--APSAMPM--LNLEEIGRGMAGAS------------------IFTMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGI 633
GL + L+ I+ ++AFR + GDPPA+VEPL V + A +ARPR + K WL +G+VF N QA +S AMA PKK YR+++D+RA N+ V P MP ++ + S IFT+ T +G++TP RVP+G+LNATSYFQ T+ +L GL C VWVD + +L+ L +++ERL G+
Sbjct: 495 GLDEPHVGRLRSII-RERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGL 720
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA) HSP 1 Score: 121 bits (304), Expect = 4.770e-28 Identity = 81/255 (31.76%), Postives = 123/255 (48.24%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
AR +GL G+ L++I++ +FR DPP V PL V V +A+ +A+PR S + +LD+H KL + G+V N ++R++S V KK+ RM D R VN PM LE + + GA +F T +T +G+YTPTRVP G +A +Y QG + ++ LL VW+DDI +A + +EL++ L VL R + G+ K F E++
Sbjct: 403 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTKAQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVK 656
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.650e-27 Identity = 81/255 (31.76%), Postives = 122/255 (47.84%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFRREMR 678
AR +GL G+ L++I++ +FR DPP V PL V V +A+ +A+PR S D +LD+H KL + G+VF N ++R++S V KK+ RM D R VN PM LE + + GA +F T +T +G+YTPTRVP G +A +Y QG + ++ L W+DDI +A + EL++ L VL R + G+ K + F E++
Sbjct: 311 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVK 564
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.200e-27 Identity = 80/250 (32.00%), Postives = 119/250 (47.60%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLF 663
AR +GL G+ L++I++ +FR DPP V PL V V +A+ +A+PR S D +LD+H KL + G+VF N ++R++S V KK+ RM D R VN PM LE + + GA +F T +T +G+YTPTRVP G +A +Y QG + ++ L W+DDI +A + EL++ L VL R + G+ K + F
Sbjct: 446 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFF 694
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Match: A0A6A3VFD8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFD8_9STRA) HSP 1 Score: 119 bits (297), Expect = 3.600e-27 Identity = 82/251 (32.67%), Postives = 121/251 (48.21%), Query Frame = 1
Query: 1 ARTEGLPPNGITELKQIVMNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDKHFTKLAQVGMVFANPQARFSSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMLNLEEIGRGMAGASIF----------------------TMVTAKGVYTPTRVPEGVLNATSYFQGTMGDVLAGLLE*LCEVWVDDIGIWAGTWQELMRRLRVVLERLQVRGIYAAVHKAKLFR 666
AR +GL G+ L++I++ +FR DPP V PL V V +A+ +A+PR S D +LD+H KL + G+VF N ++R++S V KK+ RM D R VN PM LE + + GA +F T +T +G+YTPTRVP G +A +Y QG + ++ L W+DDI +A + EL++ L VL R + G+ +H KL R
Sbjct: 446 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGL--KLHAKKLVR 693 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54677.12926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig54677.12926.1 >prot_H-paniculata_contig54677.12926.1 ID=prot_H-paniculata_contig54677.12926.1|Name=mRNA_H-paniculata_contig54677.12926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp MNSHFHAFRRALSGDPPADVEPLWVHVPADARAGRARPRPMSRDKAEWLDback to top mRNA from alignment at H-paniculata_contig54677:5..748+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig54677.12926.1 ID=mRNA_H-paniculata_contig54677.12926.1|Name=mRNA_H-paniculata_contig54677.12926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=744bp|location=Sequence derived from alignment at H-paniculata_contig54677:5..748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig54677:5..748+ >mRNA_H-paniculata_contig54677.12926.1 ID=mRNA_H-paniculata_contig54677.12926.1|Name=mRNA_H-paniculata_contig54677.12926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig54677:5..748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |