mRNA_H-paniculata_contig5454.12910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5454.12910.1
Unique NamemRNA_H-paniculata_contig5454.12910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5454.12910.1 vs. uniprot
Match: A0A835ZFB8_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.150e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:  188 VKEAGFPHTSIWRPGLLGRGDKARGVEKMARLLIRPMAVETLALAMVRDAESKIGGEAEEDAAVFSNKDMRRLA 409
            VK  GF   SIW+PGLLGRG+KAR VE+M   L+R + V T+A AMV DAE+K   EA      F NKDM  LA
Sbjct:  144 VKGLGFALVSIWQPGLLGRGEKARFVERMTAYLVREIPVSTVAKAMVADAEAKAAQEAA-PPCTFGNKDMWALA 216
[Close]
BLAST of mRNA_H-paniculata_contig5454.12910.1 vs. uniprot
Match: L8HE84_ACACA (HIV1 Tat interactive protein 2, 30kDa, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HE84_ACACA)

HSP 1 Score: 65.1 bits (157), Expect = 1.560e-8
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 2 
Query:  188 VKEAGFPHTSIWRPGLLGRGDKARGVEKMARLLIRPMAVETLALAMVRDAESKIGGEAEEDAAVFSNKDMRRLA 409
            +KE  F  T+IWRPGLLGRGDKAR VEK+A+ +   M V  LA AM   AE  +  +      +F NK++  +A
Sbjct:   84 IKEMDFARTTIWRPGLLGRGDKARLVEKLAKYVSSEMPVARLAHAMRLHAEHILENDESPKVEIFGNKEINAIA 157
[Close]
BLAST of mRNA_H-paniculata_contig5454.12910.1 vs. uniprot
Match: D7FHE2_ECTSI (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHE2_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.960e-8
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 2 
Query:  185 VVKEAGFPHTSIWRPGLLGRGDKARGVEKMARLLIRP 295
            +V+ AG+PHTSIWRPGLLGRG KA+GVEK+AR L+ P
Sbjct:  168 LVRSAGYPHTSIWRPGLLGRGSKAKGVEKVARFLVTP 204
[Close]
BLAST of mRNA_H-paniculata_contig5454.12910.1 vs. uniprot
Match: A0A0S4IXG5_BODSA (Uncharacterized protein (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IXG5_BODSA)

HSP 1 Score: 65.5 bits (158), Expect = 5.450e-8
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 2 
Query:  188 VKEAG-FPHTSIWRPGLLGRGDKARGVEKMARLLIRPMAVETLALAMVRDAESKIGGEAEEDAAVFSNKDMRRLAS 412
            V +AG FP  SI RPGLLGRGDKAR VE +    + PM V+++ALA+VRD  S     +     +  N D+ R+A+
Sbjct:  168 VSQAGLFPRVSILRPGLLGRGDKARTVESIISCFVTPMPVKSVALALVRDFFSPTPNSSSSHVTILHNGDINRIAA 243
[Close]
BLAST of mRNA_H-paniculata_contig5454.12910.1 vs. uniprot
Match: UPI000A2A85BA (oxidoreductase HTATIP2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A85BA)

HSP 1 Score: 57.4 bits (137), Expect = 2.910e-5
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 2 
Query:  188 VKEAGFPHTSIWRPGLLGRGDKARGVEKMARLLIRPMAVETLALAMVRDAESKIGG--EAEEDAAVFSNKDMRRLAS 412
            +KE  F  TSI+RPGLLGRG K R VEK+A  +++P+ V T+A AM  +AE       EA+E   ++ N D+  L++
Sbjct:  168 LKEMKFQSTSIYRPGLLGRGQKNRTVEKVAAWVMKPIPVATVARAMRIEAEQFFAKKQEAQEQQNLYFNADIIALSA 244
[Close]
BLAST of mRNA_H-paniculata_contig5454.12910.1 vs. uniprot
Match: A7SF50_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SF50_NEMVE)

HSP 1 Score: 57.0 bits (136), Expect = 4.000e-5
Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 2 
Query:  188 VKEAGFPHTSIWRPGLLGRGDKARGVEKMARLLIRPMAVETLALAMVRDAESKIGGE----AEEDAAVFSNKDMRRLASSK 418
            +K+  FPHT+I+RPGLL RGDKAR VEK+    +  + V T+A AM  + E     +    A   A    N D+ +LA  K
Sbjct:  168 LKKLQFPHTTIYRPGLLSRGDKARFVEKIYAWFVSSIPVATVAKAMRVEVEGHFSSKQTTGASAQARTLFNSDIYKLAEEK 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5454.12910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835ZFB8_9STRA1.150e-1055.41NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
L8HE84_ACACA1.560e-845.95HIV1 Tat interactive protein 2, 30kDa, putative n=... [more]
D7FHE2_ECTSI3.960e-872.97NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A0S4IXG5_BODSA5.450e-846.05Uncharacterized protein (Fragment) n=1 Tax=Bodo sa... [more]
UPI000A2A85BA2.910e-544.16oxidoreductase HTATIP2 n=1 Tax=Exaiptasia diaphana... [more]
A7SF50_NEMVE4.000e-540.74Predicted protein n=1 Tax=Nematostella vectensis T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5454contigH-paniculata_contig5454:5406..13441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog2880.D7FHE2
Preferred nameHTATIP2
KEGG koko:K17290
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0010942,GO:0012505,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0022603,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0036211,GO:0042981,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045765,GO:0045893,GO:0045935,GO:0045944,GO:0046777,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060548,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:0140110,GO:1901342,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.angiogenesis
EggNOG OGsCOG0702@1,KOG4039@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04147
Exons3
Model size2723
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5454.12910.1prot_H-paniculata_contig5454.12910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5454 5428..11139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930564.8520083-UTR-H-paniculata_contig5454:5405..54271622930564.8520083-UTR-H-paniculata_contig5454:5405..5427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5454 5406..5427 +
1691481350.4515636-UTR-H-paniculata_contig5454:5405..54271691481350.4515636-UTR-H-paniculata_contig5454:5405..5427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5454 5406..5427 +
1622930564.9235895-UTR-H-paniculata_contig5454:11139..134411622930564.9235895-UTR-H-paniculata_contig5454:11139..13441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5454 11140..13441 +
1691481350.4940748-UTR-H-paniculata_contig5454:11139..134411691481350.4940748-UTR-H-paniculata_contig5454:11139..13441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5454 11140..13441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930564.8723292-CDS-H-paniculata_contig5454:5427..55891622930564.8723292-CDS-H-paniculata_contig5454:5427..5589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5454 5428..5589 +
1691481350.4639657-CDS-H-paniculata_contig5454:5427..55891691481350.4639657-CDS-H-paniculata_contig5454:5427..5589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5454 5428..5589 +
1622930564.8854213-CDS-H-paniculata_contig5454:9814..99251622930564.8854213-CDS-H-paniculata_contig5454:9814..9925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5454 9815..9925 +
1691481350.4746943-CDS-H-paniculata_contig5454:9814..99251691481350.4746943-CDS-H-paniculata_contig5454:9814..9925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5454 9815..9925 +
1622930564.9008055-CDS-H-paniculata_contig5454:11013..111391622930564.9008055-CDS-H-paniculata_contig5454:11013..11139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5454 11014..11139 +
1691481350.4845574-CDS-H-paniculata_contig5454:11013..111391691481350.4845574-CDS-H-paniculata_contig5454:11013..11139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5454 11014..11139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5454.12910.1

>prot_H-paniculata_contig5454.12910.1 ID=prot_H-paniculata_contig5454.12910.1|Name=mRNA_H-paniculata_contig5454.12910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MLHRRDCDKTATANATATANATATATATATAAKGTTLSRDVAAASQHPSA
AESIVVKEAGFPHTSIWRPGLLGRGDKARGVEKMARLLIRPMAVETLALA
MVRDAESKIGGEAEEDAAVFSNKDMRRLASSK*
back to top

mRNA from alignment at H-paniculata_contig5454:5406..13441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5454.12910.1 ID=mRNA_H-paniculata_contig5454.12910.1|Name=mRNA_H-paniculata_contig5454.12910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8036bp|location=Sequence derived from alignment at H-paniculata_contig5454:5406..13441+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCATGTCATGTTCCTTTCACGATGCTTCATCGGCGAGACTGCGATAAGA
CTGCTACTGCTAATGCTACTGCTACCGCTAATGCTACTGCTACTGCTACC
GCTACTGCTACTGCTGCTAAGGGTACTACTCTTTCTAGGGATGTCGCTGC
GGCTAGCCAGCACCCTTCCGCCGCCGAGAGCATTGTAAGTTGGCGCCTTT
TAGTTGGTTGTACCCTGGTCTACGTAGAGAATGCTATCTATCCCATAGTT
TCGTGTCCGTCTTTCTATGTCACTATGGGGATTTAAAATCACTATAAGTA
CAATCAACTAATGAATTATATTCGTCTACTTGAAACGGTTACAATCCAGA
CAAGAATTGGCGTCGAATGCGTTGAAAGCAGTACCACGAAGTTAGTTAGT
TAGTTAGAGCTGGTAATGCCTGCTTGCACCAGTCGGGTGTACACATCTTC
GCCTTTTTCTTGTTTCGTTTCCATATTTTTGTGTCTAGGCTGCTTGTCGA
AGACGGGAGAGGAAAGAGATTCCATATGAACAGCGCGTTTTTTTGGGGGT
TTTTTGGGAGGGGGGGGTTTCATCGCATTACATGATCGCGTTGCCCAATT
CCCCACGAAACGCACTCTTGATTAAAATATATACTCTACACTGGTACTCT
AAGCCAAAGAACGTATATGATACGTACTATACTAAATTCTATTTTTTTGT
TGTTTTTTTAACCCCCGTAAGGCTGAGGCAGAGACCTTTACCGATGTTCC
ATACTTGAGTATTTTACCAAAGTATGTCTACATTTCCTTTAACAGAACAG
AGTTATTTGTTACTAAATACTAGTACCGTAGTGTTAGCCTCTATAAAGAG
TGCCAATCGCCGCCCCTCGACCGATTTGAAGTATTTCCTTCTTCTGGTGA
TTAATTAAAATGGTTGATGTTCAAGAGACAGCAAGTTTTTTTTTTGTTTT
TTTTTCGAGTGTCCGTTTCAAGATGCAAAGTTTACAAGTGGAGCGACTCT
TATCGCAGGGTTTCACTTGGTTTTAGTATGGATTCTCTGGACGCACGGGG
CGGTGGGCAGTTTTGGCACTTGCTCCGCTCTGCCAGGGCAGTTAGATCGG
CAGGTGTTACAGCGCACACTGCACTGCCACGTCCCAATGAAGTAGTTGGT
CATCTGTATGCCCTGCGAACGCACACTAGGCTTGACGTTTCGGTTTTAGA
AGTAACGGTGGAGGTCTTGGTTTACGTTGGGTATTGTCGTTTGGTGTGAG
CGGTGAACTTTGACCGATATGTGTGAAAAATATAAACGGAAGAAGTCGCC
CGGGTGGTGATCTGGCTTCGCAATATACAAGATGCCATACTTCAGATGGA
TCAAGTTCTGCAGTATCCAAGTTTCGGCCCTCGGCCCAAGTTGCATACAA
AAAGGCATCCTCGTCGCAGTAGAGGTCCTTCATCCGTGCGTGTAGCTGGA
CAGCGTTCGTCCCAGACCAAAAGGAGAGCCGGAAATGATGCTCTGCCCTC
GTGCCGAGTGAATGGGCATAAGAGAATAGAAGATGCTGTTCAGAGATACG
CTACTCATTTCGGATTATTTATCCTGCCCAACGTTGTATCGTGTGAACTA
TACCCGCCGCGCCAGCGGCAAAAGTTAAAATATATTAATTACATGTCATC
AACAAAAAAATCGTGTATCCTACCTCTGATGGTGATCGTGTCTCTCTAAT
TAAAAAAAAAATCTAATTTGGTCATTAGCGAGTTTGAAACTACGCACCGA
TCGCACCACTTCGAGCCCAGCGAGCACTTCAACCTATCCGTGAGTTAGTC
TCAACCGTTACGCTCGAGGGGTCAGCGGGTCAGCGGCTAGACCCCCTCGC
TACCTGTAAGCAGGCTAGCCTCGTACCTAACTCAAACTTTGTCACCACCC
ATGACTCTGGTCATTATCATTACGTGAACATTTCAAGGTGTGTCATCGAG
ATATTTTTGTCGCCTACATGATGACAATAGGGAACAACTTTATATCAGAT
CTCGAGCCGCAAAAACTTCATCTGAGATCTGTCTACTTCTTGGTTCTCCT
TTGGAACGCTCCAAAAACTTTTAATTTTCAACACGAATCGAATGTAAAAA
ATTTGACATGGTGAATGTTTGACTAGGAGCAGGGTAACCACCTTTCGTAG
TCTTGTTTGTACTGGGGATGGATGCTTCGTCCGGCTTTCGTACGCCAGTT
AGATTGTATGATGTCATACTCCATCGATGTTTACCTGGGCCAAAGTAGGT
GCCTGCCGTACTAAAAAAATAAGGTTCCGCTTGGTATTTTATGTTGATTT
CATTATCTGATTCCCAACTGAAACAGCAGAAAAAAACAAGTGGATTTTTT
TTTTTTTTTTTTCTGGAGAGACATGACGTTGTTCATCACTATCAGGACTA
CTATCAGTATATATTTAGTTATCATGCGGATTACTTGTAGACAGTTGCTG
ATAGGGTGCTGTAACTATTCAGTCTGCCGCTGATGGATAATACTCCTAGC
GAAGGTAGGAATTGACATTATTGGTATTGTTCATTTCGGAACAAAAACGA
TTTCTCATACTTTATCCAAGTTTTTTCGTGAGCAAGAATTTTCTTTTTCG
TACATTAACAACAGCCAAAAACGTTGGGTGGTGTCACAGTCACCTGATCG
AACATGGAGGGGGTGCATTACTATCGTTGTTATTATCATTCTTAGTATCA
TTACTACAGTGGGACATAGCATGCTAGTCCCTCTATCTCACTAAATACGC
CGCTCTCGTGTACCAAAAAAATGCCCCATTTTGGACCAGAAACCGCTACT
ACTTCGGTCATAACTTTCGACAGAACACTTTGGAGCGGAAAACTAGGTAT
CTCCGGAGAACCTGAGATCAGGCACTTCCAACGGTCCAAGGATCATTCAA
AACCGCTGTGTCTGCAAACAGTTACGAACACGAACGCTGCCTCAGGTCCT
CACACATTGGTGCTCCCACCAGATTTGCGAACTTTTTCGTGCCGCGGCCC
GCATGGTTACGAGAGTTGGTAAAGGCCTTCCTTAGGACCCGCCGCGGAAA
CCGGTGTGAGGGTTTTCGGAGATTCGTCCTGTAGAGCTCGTTTTGTGCGC
TGCTACATGCCGTACTCAGTGAGGTGTTTTTTTGGGGGTGCAAAGTGCAT
ATGTTGGTGTGAGATTTCACTCTTCTAAACAGGGATATGTTGACGCCATC
ATCGTGATGAACGTGAGAGCCACCGTATTCCGGTGTGTTGGAACCGCAAA
AGGTGGCGTGAATCAACAGTTTTCCGTTACAGTCGCAGACCTGCTTTGCC
TGCATGAAAATAGGGGTGAAACTGCATGCTGACCGCGGTAGTTCGTGATC
AATGGTACTTGAAGCGCCGTAGTACGTCCGTATCGTCCGGTTGGTCCGAA
AGCCGCCTATTTGGCGGTAGGAGCGCCTTGAATTCCCCATTTTGTATAGT
TTTTCGTCATTCTCCAGTCGTTAAGGTTTTTTCTTGAATATTCCATCAAT
TGAACGAATTTCTTACCGTCGATATAAATATTTTTCATCATGTTCCTATT
GACCATGATGAAAAAATCGTTTGACGGATTTATGTTTTTTTCAATCGAAC
AGTTGAGATATTGAGGAAAAAACGAATGTTCCTATGGCCGAGAGCCGTTT
TGGTGCAAAAAGAAAACCTATAGGAAATCGGTTGTGTTGGCTGTAACTCT
TTGTATTTGCAATGTTTATTGAAACACTCCGTGAAACAAGATGTCTCCTC
TCTCCTACGTGCTGATTTGGCGAGGGAGTAGGTAATATGCCCCACTGTAT
TAGTGTTAATATTCGCTTTGCCCTATCACGCAGACGCACAGAGCATGCAG
CCATCTAAGCGGCAGAAACAGCAGCCTACCTCACCTGGTTGTGTGGCACA
GAGATACCTACATGTACCTGTTTGTGTTCTGTGTCCGAAACCTGTATTTG
ATTCAGACGTCCCGGAGCCGAAAATCCACCTCACTCGGCGCTTTTCATTT
TGCATTTTGACGCGGATTCCAACACGTCTTCACATGAACTGACGCAGCCA
TAAACCCAACCTTTCAACAGATTTTCGAAACTTGAGCCTGTCAAGGGTTA
CAATCGGACGCTGGAGTACTATTTTCACGCACGTACCGTACCCGTTTGTC
ACTCCAAATGATGCAGGTGTACCTGTTTGTGTCGAAACGCCGTTGACTTC
TTGTTTTTTTGTTTTTTTTGCAAACCTGAGGGATCGCCTTAGGCCCAATC
GTCATATAAAATCACTTTTCCCCCCGACCGACCTCTGATCGGTGATATTG
GAGGTGACCTCTTACATTAGTTTCTGACAGCTTGTGTCCTTCTGCTGTAT
TTATCAATTGTTCGGGTGTTCTTTTGCCCTTCTTGATGTTGTCGTTATTG
ATTCAAAAGGTCGTGAAGGAAGCTGGATTCCCGCACACGTCGATTTGGAG
GCCGGGTCTGCTGGGGAGAGGCGACAAGGCAAGGGGAGTCGAGAAGATGG
CCCGCCTCCTTATTAGGCCGGTACGTTCATTCCGAATACTCGTGAAGGAG
AGGAGGGGGAGAAGCTGTAGGTAAAACGTGAAATAGTTCTCACCCCCCTG
GACAAATATGGATAATTGGCGTATTCGCCACGAAGATTAAGAAGTGTTAG
CCTAAGTTTCAGAATGAGCTCGTGTATTCTAAGTGCCCCGGACCATCCAC
CACTGCTAATAATGCCCGTAAATCGAATGGACAGGGGTGAATACTTTGTT
CTGTGTCCGCTCATTCTGAAACTCCGGCGAAGACTTTTAGTTTTTTATAT
GTCACATGAACGATAGATACTCTCGATATTTTTAACCAATTCTAATTCTC
ATGCATGATGAGTCAACCCTGCCACTATAAGCACATCCAACGACTAACTA
GTCGTCTCAAACAACTAGTTACAAACCCTTGAACCTGGTAGAAACGATGT
CTCTCTTGTTTCGGGTCCAGTTTATATCCTGTATACATGATGTTGTATGT
TGCAGTCGATCCCTTCTTCAGCTTTTTTTTTTTTTCTGTTTTATTGCCGT
CACAGCTCGGACGAAGGTCCTTCATCCGTCGATGAAGGATATCGCGAGTT
TTGGAACTATACCAGCACGAGGATACCTGGTGCCTTTCGAAACCCACAAA
TCGATAGCATGGATATCCTGCATACCTTCGAGGAGTGTTCGACTTTTGAG
TACTACAGTAGCGCACCTCCATAGATATTTGTTAATTTTGAGCATGAAGG
GATTACGGTTCCGTTGTGTGTTGATTACTTGAAAATCAAACCCTTATCCC
AGCTATGCAATCCTTGTACAACCCCTTTCCAGAAATGGTGCCCCCCACGA
ACTCTTGAATATACACACAACGCTTTCGTGCAGACGAAGTGATCAAGACC
GCGAGATGAATGTGTATTTTGGTTTTACTTCCCATAATCGCTTTCACGGC
GTTCGCCTCGCAACTCTCATTTATTTTTTATTTTTTTAGGGTCCAGTGTC
ATAAGGGTTGATATTGTACATATGGACACCTTTCAGTTATTGCATAACAT
GATCAGAATACTTGCCTGATCTTGCGTTCTTATTGATGCTGCCTGCGGGT
GATTGCAGATGGCAGTAGAAACGCTTGCTCTCGCCATGGTGAGAGATGCC
GAATCCAAGATAGGGGGCGAGGCAGAAGAGGATGCTGCGGTATTTTCCAA
TAAGGACATGCGTCGGTTGGCTTCTTCCAAGTAAAGATGGCCTTACTTGA
CTACTTGACAAGTCGGATAGGAAACATGGAATTCTGTAACATGGACTTTT
CCTCGTTTTGCACACGACGCACAGAATCGTTTACTCGTCGCTATAGAGTT
CCATGGGTCCAGACGAAACAGTGGTGGCCCTAGTAGATGTAGACCAGAGG
GGTAGAGGGGGAGCAGAAAGGCAGAAGGGAGCGTTCGGTTCAGGGGAGCA
CTGTATTTGTTTTGATTTGATCTGATCTGATATGATATGATGTGTTCGAC
ATGTGCCTAATTTTCCTTCATTTTTATTATTGCTACAATGGAGGTTGATT
GGACTGCCCCTTCTTTGTGGCTATTGATTTGATTCGAACTCAAGGATAAG
TGATACCTCTGTTGTTGCTGCTGCTGCTCTTGTTCGGAGCTGACTGACCT
CTTCTAGTATCGAGTGTATGATCTCTGATGACCAAGGTAGTGGCGTTTGT
GGGTTTTGCCACTGTATAGATGGGTTAGTACTGTTTCGTCTGTCTGTCTG
TCTGTTGGCCAACTTTCGTTGGTGCCTTGAGGGTGTTGGATACGTGAGTG
ATTCTAACATGGCTGATAGCTCCATCCAGTTGTAACGTTAGTCATCCAAA
AGTCTTGTTATCAATGCTTACGAATTACCTCGTCCTCGTACATCATATCG
AAATTGTACATGTTTTTGACTGCATGATGATTGATTGATGTATCGACAAT
TGGCCTTGTGTCGCTTTCGGTTTGCGTGAGATTTTATGGATCTTTGAAGG
AGCGTGATGTTCTTCCGTGGTTGACGGTGCTGTGCGTGTTTGGGCTTCTC
TATACAATATATTGATGAGATATTTTCATAAACGGTACCCCTGTTTAGTT
TATTGCTTCATTTTATCCTTGTCTGTTTGGAGTTTTGTTATCCTTCAACG
TAAGGACCGTGGTTGACTTGAAAAAAAGTTGCCTATCTTGTTTGGGCCAC
GCGTTCGTGTTTTTAGGGAGAGAAGGAGGCATTCGTTGGATTTGGAGCAA
CCAGATTCCCCCGGTACATGCATATGTAAAACTTCAGACGTCCATTTGTA
TGTTCCTTTGTGGAGTTGTTGAGTATATGTTTTTGTTGATTTTGAAAAAA
AAAAGGATGAGATTAACATATGTTTTTTTTTTTTAGGAGTCCCTAAAATC
CTAGTAACGGTGGCTAAATGTTGTAGGAAGTGCAACACAGGGCGGGGAAA
GGACGTGGTACTGATCGATGGAGTTGATTTTGGGGGGCTAAATCGGCCTG
TGCGGCCTCTGCGGTCCAAGTTTTTTTTTTTTTTTTGTTTACCTACATGG
AAGGAATTGCAATCTAGTCTGTTCGATACAGAGAGGAAGCCAAATGATAT
TAATGGTTGGTGACCGTTATATATTTATTTATACTAGGATGGCATCATCA
CTATGTGGGTGTAGGGTAAGGTATTGGATTATGACTACGCTGAGAGGGGG
GAATGGCGTGACGTTACTTTCCCCGTATTTCCTTCACATTGTTATTATCC
ATTGACCTGAGTGCTGACGTTCTTTTTGCCATCTCGATTTGCCTTGTTTT
TGCGACACGGCTTATTTCGTTTTTTTTTTCAACGATTCGGGTGTAGCAAT
TAACTAGCTGGTAGGATTACTGATCAACATTGCTCCGAGTACTATCTTTA
TAGGACATCATCACTTCTGTGCATGCGTGTTCTAGAAGACAGAGTCGGTG
GGATTAGATAGACTTGATATGGCACATAGAGAATGACCTGCCCGTGTTTA
TATCTGTAGCGGATGAATGGAGCAAGCACGCCGGTGGAACATGACCGTAG
AGGTCCACTACCATCATCCCTATTTTTTTGGTTGGCGTTTTTGTTGTTGT
TCGGTACAGTACCGGGTCGATCGAGAAAACCTCCTAATTGAGGTGGAGCT
TGGTACCTTTTTTTGGCGAGAATTAGGAGCAGAAGGTACCGTAATTACGT
ATATTACGTTCACATAGGAACTAGTATGGGGTTGCATTTTGCGCGCATTC
TCTTGGGTAAAATTTGTCTTCATGGGTTAGCTAAAAGTGAGCTTGTATTT
TTTTCTTGCGTGATTTCTTGTCTGCGGGCCACCCGAACTATTAGAAAGGG
AAAAGATGCCCGTAGGTTTCCTTTGGTCAATCCCATGACAGTAGGATTCT
GATTGGTCGAAAACCTTAGTCGAGATCCGACCACACTCACGGTCATTACG
TCACCTTTTTTTTCTTCGTGTTGGGGGTGTGTTTTATTCGGTATGTGGGT
GTTACTGATAAAAAGGGAACGTTGTGACCACGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5454:5406..13441+

>mRNA_H-paniculata_contig5454.12910.1 ID=mRNA_H-paniculata_contig5454.12910.1|Name=mRNA_H-paniculata_contig5454.12910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig5454:5406..13441+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCATCGGCGAGACTGCGATAAGACTGCTACTGCTAATGCTACTGC
TACCGCTAATGCTACTGCTACTGCTACCGCTACTGCTACTGCTGCTAAGG
GTACTACTCTTTCTAGGGATGTCGCTGCGGCTAGCCAGCACCCTTCCGCC
GCCGAGAGCATTATGCTTCATCGGCGAGACTGCGATAAGACTGCTACTGC
TAATGCTACTGCTACCGCTAATGCTACTGCTACTGCTACCGCTACTGCTA
CTGCTGCTAAGGGTACTACTCTTTCTAGGGATGTCGCTGCGGCTAGCCAG
CACCCTTCCGCCGCCGAGAGCATTGTCGTGAAGGAAGCTGGATTCCCGCA
CACGTCGATTTGGAGGCCGGGTCTGCTGGGGAGAGGCGACAAGGCAAGGG
GAGTCGAGAAGATGGCCCGCCTCCTTATTAGGCCGGTCGTGAAGGAAGCT
GGATTCCCGCACACGTCGATTTGGAGGCCGGGTCTGCTGGGGAGAGGCGA
CAAGGCAAGGGGAGTCGAGAAGATGGCCCGCCTCCTTATTAGGCCGATGG
CAGTAGAAACGCTTGCTCTCGCCATGGTGAGAGATGCCGAATCCAAGATA
GGGGGCGAGGCAGAAGAGGATGCTGCGGTATTTTCCAATAAGGACATGCG
TCGGTTGGCTTCTTCCAAGTAAATGGCAGTAGAAACGCTTGCTCTCGCCA
TGGTGAGAGATGCCGAATCCAAGATAGGGGGCGAGGCAGAAGAGGATGCT
GCGGTATTTTCCAATAAGGACATGCGTCGGTTGGCTTCTTCCAAGTAA
back to top