mRNA_H-paniculata_contig54518.12908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54518.12908.1
Unique NamemRNA_H-paniculata_contig54518.12908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A6H5KD01_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD01_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.560e-21
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   43 HSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADL----------VEIDEDGGGTDG 255
            HSIYDSFSWVDNYGDPGFRYF+ A+ +WGL+ALRLA  ++LPFDP  QA A+++Y+  L             DED G   G
Sbjct:  507 HSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQEYVNTLSPSSXXXXXXXXXDEDAGNIGG 587          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A0Q3MZK2_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3MZK2_BRADI)

HSP 1 Score: 80.5 bits (197), Expect = 9.110e-16
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   25 PPYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADLVEIDEDG 240
            P YP  HS+YD F W++ +GDPGFR    AA +WG+MALRLAD EI+PFD       +EKY  ++VE D  G
Sbjct:  529 PGYPVYHSLYDDFVWMEKFGDPGFRRHVAAASIWGIMALRLADEEIIPFDYMSYTVELEKYT-EVVERDVRG 599          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A453FFI9_AEGTS (Uncharacterized protein n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FFI9_AEGTS)

HSP 1 Score: 78.6 bits (192), Expect = 3.050e-15
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   25 PPYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADLVEIDEDG 240
            P YP  HS+YD F WV+ + DPGFR    AA +WG+MALRLAD EI+PFD     T +E Y   +VE + +G
Sbjct:  166 PGYPVYHSLYDDFVWVEKFADPGFRRHVAAASIWGIMALRLADEEIIPFDYMSYTTELEAYTK-VVEKETEG 236          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: M8AWH3_AEGTA (Putative glutamate carboxypeptidase 2 n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8AWH3_AEGTA)

HSP 1 Score: 78.6 bits (192), Expect = 4.290e-15
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   25 PPYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADLVEIDEDG 240
            P YP  HS+YD F WV+ + DPGFR    AA +WG+MALRLAD EI+PFD     T +E Y   +VE + +G
Sbjct:  377 PGYPVYHSLYDDFVWVEKFADPGFRRHVAAASIWGIMALRLADEEIIPFDYMSYTTELEAYTK-VVEKETEG 447          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A077RTN8_WHEAT (Uncharacterized protein n=16 Tax=Triticeae TaxID=147389 RepID=A0A077RTN8_WHEAT)

HSP 1 Score: 78.6 bits (192), Expect = 4.320e-15
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   25 PPYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADLVEIDEDG 240
            P YP  HS+YD F WV+ + DPGFR    AA +WG+MALRLAD EI+PFD     T +E Y   +VE + +G
Sbjct:  525 PGYPVYHSLYDDFVWVEKFADPGFRRHVAAASIWGIMALRLADEEIIPFDYMSYTTELEAYTK-VVEKETEG 595          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: F2E6G3_HORVV (Predicted protein (Fragment) n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E6G3_HORVV)

HSP 1 Score: 78.6 bits (192), Expect = 4.330e-15
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   25 PPYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADLVEIDEDG 240
            P YP  HS+YD F WV+ + DPGFR    AA +WG+MALRLAD EI+PFD     T +E Y   +VE + +G
Sbjct:  560 PGYPVYHSLYDDFVWVEKFADPGFRRHVAAASIWGIMALRLADEEIIPFDYMSYTTELEAYTK-VVEKETEG 630          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A068RZZ7_9FUNG (Glutamate n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RZZ7_9FUNG)

HSP 1 Score: 78.6 bits (192), Expect = 4.340e-15
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   43 HSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADL 219
            HS+YDSF W+D +GDPGF Y +T   +WGLMALRLAD  ILP  P   A A+  Y+ D+
Sbjct:  588 HSVYDSFHWMDKFGDPGFLYHQTMCRIWGLMALRLADSPILPIHPADYADALSGYMEDI 646          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A0D9V5G2_9ORYZ (Uncharacterized protein n=13 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9V5G2_9ORYZ)

HSP 1 Score: 77.4 bits (189), Expect = 1.100e-14
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   10 VRPVFPPYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKY 207
            VRP +P Y   HS+YD F W++ +GDPGFR    AA +WG+MALRLAD EILPF+     + +E+Y
Sbjct:  476 VRPGYPVY---HSLYDDFVWMEKFGDPGFRRHAAAASIWGIMALRLADEEILPFNYKPYTSELEEY 538          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A1F2QTL9_9BACT (Uncharacterized protein n=3 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1F2QTL9_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 2.040e-14
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   28 PYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADL 219
            PY   HS+YD   W+  +GDPGFR+    A LWG+MALRLA+ ++LP DP  +A A++ Y+ +L
Sbjct:  455 PYGVYHSVYDGHVWMSRFGDPGFRFHAAMARLWGVMALRLANADLLPLDPRAEAEALDSYVEEL 518          
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Match: A0A7S2UWP1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.300e-14
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   43 HSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLADPEILPFDPTCQATAIEKYLADL 219
            HS+YDSF W++ +GDPGF Y   AA  WGL+ALR+++P+ILPFD   QA  +   ++D 
Sbjct:  199 HSVYDSFDWMEQFGDPGFLYTTVAAQFWGLLALRMSEPDILPFDLAVQAKLLSDQVSDF 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54518.12908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD01_9PHAE3.560e-2155.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0Q3MZK2_BRADI9.110e-1652.78Uncharacterized protein n=2 Tax=Brachypodium dista... [more]
A0A453FFI9_AEGTS3.050e-1551.39Uncharacterized protein n=2 Tax=Triticinae TaxID=1... [more]
M8AWH3_AEGTA4.290e-1551.39Putative glutamate carboxypeptidase 2 n=1 Tax=Aegi... [more]
A0A077RTN8_WHEAT4.320e-1551.39Uncharacterized protein n=16 Tax=Triticeae TaxID=1... [more]
F2E6G3_HORVV4.330e-1551.39Predicted protein (Fragment) n=1 Tax=Hordeum vulga... [more]
A0A068RZZ7_9FUNG4.340e-1555.93Glutamate n=2 Tax=Lichtheimia TaxID=688353 RepID=A... [more]
A0A0D9V5G2_9ORYZ1.100e-1453.03Uncharacterized protein n=13 Tax=Oryzinae TaxID=16... [more]
A0A1F2QTL9_9BACT2.040e-1448.44Uncharacterized protein n=3 Tax=unclassified Acido... [more]
A0A7S2UWP1_9STRA3.300e-1450.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54518contigH-paniculata_contig54518:110..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue5.8e-18
Seed eggNOG ortholog2880.D7FIJ9
KEGG koko:K01301
Hectar predicted targeting categoryother localisation
EggNOG free text desc.exopeptidase activity
EggNOG OGsCOG2234@1,KOG2195@2759
EC3.4.17.21
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930564.722403-CDS-H-paniculata_contig54518:109..3701622930564.722403-CDS-H-paniculata_contig54518:109..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54518 110..370 -
1691481350.4272742-CDS-H-paniculata_contig54518:109..3701691481350.4272742-CDS-H-paniculata_contig54518:109..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54518 110..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54518.12908.1prot_H-paniculata_contig54518.12908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54518 110..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54518.12908.1

>prot_H-paniculata_contig54518.12908.1 ID=prot_H-paniculata_contig54518.12908.1|Name=mRNA_H-paniculata_contig54518.12908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
CAPVRPVFPPYPQDHSIYDSFSWVDNYGDPGFRYFRTAACLWGLMALRLA
DPEILPFDPTCQATAIEKYLADLVEIDEDGGGTDGK*
back to top

mRNA from alignment at H-paniculata_contig54518:110..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54518.12908.1 ID=mRNA_H-paniculata_contig54518.12908.1|Name=mRNA_H-paniculata_contig54518.12908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig54518:110..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGCACCCGTTCGCCCGGTCTTCCCGCCCTACCCACAAGATCATTCCAT ATACGACAGCTTCAGCTGGGTTGACAACTACGGCGATCCGGGGTTCCGAT ATTTCCGAACGGCGGCTTGCCTTTGGGGACTCATGGCTCTGCGCCTGGCC GACCCCGAAATTCTCCCATTTGATCCAACGTGCCAGGCTACTGCCATCGA GAAGTACCTCGCGGACCTGGTTGAGATAGACGAGGATGGTGGTGGTACTG ACGGTAAGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig54518:110..370-

>mRNA_H-paniculata_contig54518.12908.1 ID=mRNA_H-paniculata_contig54518.12908.1|Name=mRNA_H-paniculata_contig54518.12908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig54518:110..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGCACCCGTTCGCCCGGTCTTCCCGCCCTACCCACAAGATCATTCCAT
ATACGACAGCTTCAGCTGGGTTGACAACTACGGCGATCCGGGGTTCCGAT
ATTTCCGAACGGCGGCTTGCCTTTGGGGACTCATGGCTCTGCGCCTGGCC
GACCCCGAAATTCTCCCATTTGATCCAACGTGCCAGGCTACTGCCATCGA
GAAGTACCTCGCGGACCTGGTTGAGATAGACGAGGATGGTGGTGGTACTG
ACGGTAAGTAGTGCGCACCCGTTCGCCCGGTCTTCCCGCCCTACCCACAA
GATCATTCCATATACGACAGCTTCAGCTGGGTTGACAACTACGGCGATCC
GGGGTTCCGATATTTCCGAACGGCGGCTTGCCTTTGGGGACTCATGGCTC
TGCGCCTGGCCGACCCCGAAATTCTCCCATTTGATCCAACGTGCCAGGCT
ACTGCCATCGAGAAGTACCTCGCGGACCTGGTTGAGATAGACGAGGATGG
TGGTGGTACTGACGGTAAGTAG
back to top