mRNA_H-paniculata_contig5442.12897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.960e-18 Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 181 RSLCMDAFIIILTKSCSERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLWATSADQPLPSTSGRPRQCLLSVSRVPLLRARAVTWTMSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRIRQILF 597
RS C+ + L ++C + Y + LQL SLE+CMACR + TLH+ + TPRRL A +AD P P P++ L +RVP LRAR TW + +A M + +V+Y++FG F+ SL+ +VWP R++ I F
Sbjct: 133 RSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLA-AADAPSP----HPKR--LCGTRVPRLRARRATWNVP-TASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEF 263
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.580e-17 Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 205 IIILTKSCSERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLWATSADQPLPSTSGRPRQCLLSVSRVPLLRARAVTWTMSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRIRQILF 597
I+ L + C + Y + LQL SLE C+ACRK+ L +++ TPR L A + D P P T R C +RVP LRAR V W M + E ++ + L +V ++FG FN SLE VVWPP ++QI+F
Sbjct: 22 ILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLA-AVDAPPPHTK---RPCR---TRVPRLRARRVKWNMPTATELRTL-MFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIF 144
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 2.020e-15 Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 1
Query: 190 CMDAFIIILTKSCSERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLWATSADQPLPSTSGRPRQCLLSVSRVPLLRARAVTWTMSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRIRQILF 597
C++A + L ++ + Y + LQL SLE CMACR + TLH+ + + PR L A + P P++ LS RVP LRAR VTW M +AE S + L +++++ FG F SLE V WP R+ I F
Sbjct: 36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQ-----HPKR--LSRRRVPRLRARHVTWNMPTAAELRS-PIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAF 163
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 8.100e-15 Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 181 RSLCMDAFIIILTKSCSERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLWATSADQPLPSTSGRPRQCLLSVSRVPLLRARAVTWTMSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGV-VWPPR 579
RS C++A +I L ++C+ Y + LQL SLE C+ACR + TLH+++ PRRL A AD P P LL +RVP LRAR VTW M +AE +S+ + + +V+ +KFG SLE + +W R
Sbjct: 110 RSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLAR-ADAPPPHPE------LLCRTRVPRLRARRVTWGMRKAAE-LSIPIFAMTDVDCLKFG---ETSLEALRLWHGR 232
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 5.520e-13 Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query: 178 GRSLCMDAFIIILTKSCS--ERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLWATSADQPLPSTSGR-PRQCLLSVSRVPLLRARAVTWTMS-------ASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRIRQILF 597
G S C+DAF++ L ++C E+ Y+ LQLVSLE+C ACR+ TLHVR+ TP LW S + +T+ R P+ C+ SRVP+++A +TW + ++ E S AN SLE VWP R+++++F
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHT--TTNNRSPKVCIS--SRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSA------ASLESAVWPQRLKRMVF 144
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.100e-9 Identity = 48/144 (33.33%), Postives = 73/144 (50.69%), Query Frame = 1
Query: 193 MDAFIIILTKSCS--ERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLWATSADQPLPSTSGRPRQCLLSVSRVPLLRARAVTWTMS-------ASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRIRQILF 597
+D I+ L ++C E+ Y+ LQLVSLE+C ACR LHV + DTP LW++ + PS P C + +RVP ++A TW + A+AE + L + G F S+E VVWP +++++F
Sbjct: 90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRS-PEVC--TSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQD------GHSFAASVESVVWPESLKRLVF 224
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 2.440e-8 Identity = 51/145 (35.17%), Postives = 72/145 (49.66%), Query Frame = 1
Query: 172 QSGRSLCMDAFIIILTKSCSERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLW-ATSADQPLPSTSGRPRQCLLSVSRVPLLRARAVTWTMSASAEFMSMDSYLLANVEYVKFGIRFNRSL-EGVVWPPRIRQILFG 600
++G S C+DA II L ++ S Y LQL SLE+C ACR L + + TP RLW T+ + S R +V+RVP++RAR VTW + A +M + V G F+ L G+ WP ++ LFG
Sbjct: 37 ETGPSRCLDALIIALNQA-SGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRR------NVTRVPVVRARTVTWKLPGVA-LRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLT--LFG 171
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 3.650e-8 Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 1
Query: 172 QSGRSLCMDAFIIILTKSCSERGCYLPIRTLQLVSLEMCMACRKFSTLHVRMAIDTPRRLW-ATSADQPLPSTSGRPRQCLLSVSRVPLLRARAVTWTMSASAEFMSMDSYLLANVEYVKFGIRFNRSL-EGVVWPPRIRQILFG 600
++G S C+DA II L ++ S Y LQL SLE+C +CR L + + TP RLW T+ + S R +V+RVP++RAR VTW + A +M + V G F+ L G+ WP ++ + G
Sbjct: 6 RAGPSRCLDALIIALNQA-SGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRR------NVTRVPVVRARTVTWKLPGLA-LRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLG 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5442.12897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5442.12897.1 >prot_H-paniculata_contig5442.12897.1 ID=prot_H-paniculata_contig5442.12897.1|Name=mRNA_H-paniculata_contig5442.12897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=352bp GLYGQSRCSSKSALYGLSSSQPLISRCAFEGYTACSTMYSVGSKAAAACIback to top mRNA from alignment at H-paniculata_contig5442:9152..11565- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5442.12897.1 ID=mRNA_H-paniculata_contig5442.12897.1|Name=mRNA_H-paniculata_contig5442.12897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2414bp|location=Sequence derived from alignment at H-paniculata_contig5442:9152..11565- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5442:9152..11565- >mRNA_H-paniculata_contig5442.12897.1 ID=mRNA_H-paniculata_contig5442.12897.1|Name=mRNA_H-paniculata_contig5442.12897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at H-paniculata_contig5442:9152..11565- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |