mRNA_H-paniculata_contig54407.12894.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54407.12894.1
Unique NamemRNA_H-paniculata_contig54407.12894.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: D7FKT5_ECTSI (Alpha-L-fucosidase, family GH95 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT5_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 9.570e-28
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:   16 SYYRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            SYYRA GWV+HAN+DRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEY+R
Sbjct:  867 SYYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 916          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: A0A6H5K8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 9.570e-28
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:   16 SYYRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            SYYRA GWV+HAN+DRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEY+R
Sbjct:  446 SYYRAGGWVSHANTDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYTR 495          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: A0A7S0QTJ0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTJ0_9CRYP)

HSP 1 Score: 73.2 bits (178), Expect = 1.080e-13
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   13 CSYYRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            C Y    GWVAH  +D W      GDA+WALCPTCGAW+ALHLWE + + R
Sbjct:  112 CLYGAPEGWVAHGFTDIWMNARPLGDAMWALCPTCGAWLALHLWERFAFRR 162          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: A0A7S1H9J3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H9J3_HEMAN)

HSP 1 Score: 72.0 bits (175), Expect = 2.750e-13
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   22 YRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            Y A GWVAH  +D W G +  GD  W+LC TCGAWMALHLWE + ++R
Sbjct:  100 YGAKGWVAHGFTDIWMGASPLGDTAWSLCVTCGAWMALHLWERFRFTR 147          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: A0A7S3YGH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGH4_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 1.710e-12
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   19 YYRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEY 159
            YYR  GWVAH  +D W     H +  W+LCPTCGAW AL LWEAY +
Sbjct:   86 YYRCPGWVAHGFTDLWAEGGLHSNIEWSLCPTCGAWAALALWEAYTH 132          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: A0A7S1MX31_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MX31_HEMAN)

HSP 1 Score: 65.9 bits (159), Expect = 1.270e-11
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   22 YRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            Y A GWVAH  +D W  T   G + WALCPTCGAWMAL  WE + ++R
Sbjct:   81 YGAKGWVAHGFTDIWMDTKPVGGSRWALCPTCGAWMALQQWENFRFTR 128          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: A0A494Y0I6_9BACL (Glycoside hydrolase family 95 protein n=1 Tax=Cohnella endophytica TaxID=2419778 RepID=A0A494Y0I6_9BACL)

HSP 1 Score: 67.0 bits (162), Expect = 1.660e-11
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   19 YYRASGWVAHANSDRWGGTA-----AHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            +Y A GW AH N+D WG TA      HGDAVWAL P  G W+A HLWE Y + R
Sbjct:  404 HYGAQGWTAHHNTDIWGHTAPVGDYGHGDAVWALWPMGGPWVAQHLWEHYAFGR 457          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: A0A328TSL9_9BACL (Glycoside hydrolase family 95 protein n=1 Tax=Paenibacillus montanisoli TaxID=2081970 RepID=A0A328TSL9_9BACL)

HSP 1 Score: 63.9 bits (154), Expect = 2.020e-10
Identity = 29/54 (53.70%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   19 YYRASGWVAHANSDRWGGTA-----AHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            +Y A GW AH N+D WG TA       GDAVWAL P  G W+A HLWE Y + R
Sbjct:  405 HYGARGWTAHHNTDIWGHTAPVGDFGQGDAVWALWPMGGPWLAQHLWEHYAFGR 458          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: UPI001B001488 (Glycoside hydrolase family 95 protein n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=UPI001B001488)

HSP 1 Score: 62.8 bits (151), Expect = 5.160e-10
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   22 YRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYSRYP 171
            Y A GWVAH N+D W  TA    A + L PT GAW+ +HLW+ Y+YSR P
Sbjct:  431 YGARGWVAHHNTDLWRATAPIDGAQFGLWPTGGAWLCVHLWDHYDYSRDP 480          
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Match: UPI0019349962 (glycoside hydrolase N-terminal domain-containing protein n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI0019349962)

HSP 1 Score: 62.8 bits (151), Expect = 5.170e-10
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   22 YRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEAYEYSR 165
            Y A GWV H N+D W  TA      W + PT GAW+ LHLW+ Y+YSR
Sbjct:  462 YDARGWVTHHNTDLWRATAPIDGTKWGMWPTGGAWLCLHLWDRYDYSR 509          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54407.12894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKT5_ECTSI9.570e-2892.00Alpha-L-fucosidase, family GH95 n=1 Tax=Ectocarpus... [more]
A0A6H5K8P7_9PHAE9.570e-2892.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0QTJ0_9CRYP1.080e-1356.86Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S1H9J3_HEMAN2.750e-1358.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3YGH4_HETAK1.710e-1257.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1MX31_HEMAN1.270e-1156.25Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A494Y0I6_9BACL1.660e-1155.56Glycoside hydrolase family 95 protein n=1 Tax=Cohn... [more]
A0A328TSL9_9BACL2.020e-1053.70Glycoside hydrolase family 95 protein n=1 Tax=Paen... [more]
UPI001B0014885.160e-1054.00Glycoside hydrolase family 95 protein n=1 Tax=Novo... [more]
UPI00193499625.170e-1052.08glycoside hydrolase N-terminal domain-containing p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54407contigH-paniculata_contig54407:470..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.2e-23
Seed eggNOG ortholog2880.D7FKT5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,2-alpha-L-fucosidase activity
EggNOG OGs2CMG6@1,2QQ9E@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930562.6673784-CDS-H-paniculata_contig54407:469..6491622930562.6673784-CDS-H-paniculata_contig54407:469..649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54407 470..649 -
1691481349.6482077-CDS-H-paniculata_contig54407:469..6491691481349.6482077-CDS-H-paniculata_contig54407:469..649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54407 470..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54407.12894.1prot_H-paniculata_contig54407.12894.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54407 470..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54407.12894.1

>prot_H-paniculata_contig54407.12894.1 ID=prot_H-paniculata_contig54407.12894.1|Name=mRNA_H-paniculata_contig54407.12894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
ADFPCSYYRASGWVAHANSDRWGGTAAHGDAVWALCPTCGAWMALHLWEA
YEYSRYPPG*
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mRNA from alignment at H-paniculata_contig54407:470..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54407.12894.1 ID=mRNA_H-paniculata_contig54407.12894.1|Name=mRNA_H-paniculata_contig54407.12894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig54407:470..649- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGACTTTCCTTGCAGCTATTACCGGGCATCCGGGTGGGTGGCACATGC AAATTCTGACAGATGGGGGGGTACTGCGGCTCATGGAGACGCAGTTTGGG CACTTTGCCCCACGTGCGGTGCGTGGATGGCTTTGCATCTGTGGGAGGCA TACGAGTATTCCAGGTACCCGCCCGGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig54407:470..649-

>mRNA_H-paniculata_contig54407.12894.1 ID=mRNA_H-paniculata_contig54407.12894.1|Name=mRNA_H-paniculata_contig54407.12894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig54407:470..649- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGACTTTCCTTGCAGCTATTACCGGGCATCCGGGTGGGTGGCACATGC
AAATTCTGACAGATGGGGGGGTACTGCGGCTCATGGAGACGCAGTTTGGG
CACTTTGCCCCACGTGCGGTGCGTGGATGGCTTTGCATCTGTGGGAGGCA
TACGAGTATTCCAGGTACCCGCCCGGATAAGCTGACTTTCCTTGCAGCTA
TTACCGGGCATCCGGGTGGGTGGCACATGCAAATTCTGACAGATGGGGGG
GTACTGCGGCTCATGGAGACGCAGTTTGGGCACTTTGCCCCACGTGCGGT
GCGTGGATGGCTTTGCATCTGTGGGAGGCATACGAGTATTCCAGGTACCC
GCCCGGATAA
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