mRNA_H-paniculata_contig5423.12871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5423.12871.1
Unique NamemRNA_H-paniculata_contig5423.12871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5423.12871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5423contigH-paniculata_contig5423:8144..13824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size184
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5423.12871.1prot_H-paniculata_contig5423.12871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5423 8144..13805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.5684774-CDS-H-paniculata_contig5423:8143..81951622930558.5684774-CDS-H-paniculata_contig5423:8143..8195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 8144..8195 -
1691481347.6294858-CDS-H-paniculata_contig5423:8143..81951691481347.6294858-CDS-H-paniculata_contig5423:8143..8195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 8144..8195 -
1622930558.581582-CDS-H-paniculata_contig5423:13692..138051622930558.581582-CDS-H-paniculata_contig5423:13692..13805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 13693..13805 -
1691481347.6406293-CDS-H-paniculata_contig5423:13692..138051691481347.6406293-CDS-H-paniculata_contig5423:13692..13805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 13693..13805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.592985-UTR-H-paniculata_contig5423:13805..138241622930558.592985-UTR-H-paniculata_contig5423:13805..13824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5423 13806..13824 -
1691481347.650542-UTR-H-paniculata_contig5423:13805..138241691481347.650542-UTR-H-paniculata_contig5423:13805..13824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5423 13806..13824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5423.12871.1

>prot_H-paniculata_contig5423.12871.1 ID=prot_H-paniculata_contig5423.12871.1|Name=mRNA_H-paniculata_contig5423.12871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MAGKAADRGGGQCSGGYLQRQPHQQQLHYAWEEVQQRLEQERMISDENNR
EASGS
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mRNA from alignment at H-paniculata_contig5423:8144..13824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5423.12871.1 ID=mRNA_H-paniculata_contig5423.12871.1|Name=mRNA_H-paniculata_contig5423.12871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5681bp|location=Sequence derived from alignment at H-paniculata_contig5423:8144..13824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTCGGGAGGATCGGGTATGGCCGGGAAGGCGGCAGATAGAGGAGGAG
GCCAATGCAGTGGTGGTTATTTACAGCGCCAACCACATCAGCAACAATTG
CACTACGCCTGGGAAGAGGTGCAGCAACGACTGTAAGTCCTGCAAAGTTT
CATACAATATCATTAGATGTTGGGTGTTAACTGTATAGAATCAGAAGACT
TTGTAGCCACAGCGTATTGTCCAAGGTTTGTCAGCAGCAGGTCCCATGTA
GACTGTGTAAGATAAAGTCAATAATGATGGCTCAGACGAGGACCTGGCTT
AGTTTTTGCTTTAATTACATTAGATCATCAAATAGTCAAATCCCGTTGGT
CCTGATGTAGGACCCCACAAAACACACTACCATCTAGTATCTTACCAAGC
GAAACAACAACGACCAACACCGGTAATGCAGCCAAAAACTGTGTATGCAT
ACTACCGTACTACATCCCAATTAAACATCGGAGTCTACAAGTCGCCGCCG
CTGGCACTTAGTTGGGTCCTTCTGAGTCGTTCCTTCTTGTTTATTGTTCT
CCAAGTTTCACCCGACCTTATATAGACCGACGATAAATGGCAATCCTTGC
TGCTGAGCAACATGGTTACTACGTTACTACTACTGTCGATCCGATTTTAA
TCGGGAGATAGTTCAACGAATTTCCCCCCCCCATTAATCCCTCTCCCGCC
CAACAAACGCAGTATACCAGAAACATTGTTTGGCTGGAAGGTAATCAGCA
CAACAAGGCTAAAGACGCTGGGATAACCTGAAGACGCTGAGATAAACAAC
CCCAAACCCTTCTTCCCGGCGCATTTATTTTTTGTGTCTCCTGCAACCCA
GTAACATGATTTGGCTTTTCGGACACCCCTATTGCCTGCAGCTTAAACGG
TCAAGTCAGTGGATGTCCACGCTTTAAGCCAGTGCCAGCCGTGAAAACAT
ATCTGGCTGCGTGGGATACTACAAAGCAAACCAGCACAAATAGTACTGAA
TACTAGGAACAGAACTAACTACAGGCAGAGGAGATAAGGAAGAAGAAAAA
CAAAATGCAAGGAAAAGACGAACAAAGCAAGAGAACTATCATCGGAAAGA
AGGTAGCGCTGTTAGCGCAAGGTGTGCGACGGTGTCGAGCGCTGGAAGAT
CCTTTTCGACATGTACGGGTGCGTTGAGCTTCGTCGCATTACTCCAGCAG
CCCCTCCCGTCTTTTTTGTTGTGCCCTTCCCGGCGCAGCCCCTTCTCGTT
TCTTCGTCCTTTCCCCAAAGATAAATCCTTCTTCGACAAGAAGCATTGAA
CATCCCGTCATATTGCCACTCTTGCCACGGGTTCCGCGCACGTAGGCACC
AGCAGCAATCCCTCTCCGCGTCGGCAAACTATGTGCCCTTCCTCTTGTCG
GCACGGTACGTACTCGGGCCTTGATATCTTGATAGCAAGAGGCCCTCCTC
GATTTCAGAGGTGCGTTAGCCCGTTCCCGTGACGGTTTGCAACATACATG
ATATGAACGAAGCTGGTACGCACGCATGCAGTAAACTGTACATCCATCTA
TAAACGCCTCATGGCGTTGGTACATCTCCGTACAGCTGCGAACAAGGTAC
CCAGGACAAGCCCGTATCCTGCCCACAACACCCCGGAATATCAACGCACG
TTGAATGGTTCAGGCGAGTCAGCAGCCAATGGTATTACCAAAACAAGCAG
GCTACCCAATATCCTGCCGAGCGATGACCGTTGACTGGGTACAAGAGTGC
TGCACTCCGCTATGTTTCATTTTCCAGTGGTGATCACCAGGTTCCCAGTG
CTGAGTAAGATAGCTCCTCATGTAGCTCAAGACGGGCTTGAATAACAACT
CATTGACCTTGCCAAAGGTCGTCCTCTCCATCGAACCTACAGTATGCTAT
GCCTTGCCGCTCGTCAAGTTACCGGACCCATCACTGTGTCGAAAACCACT
CGTCACCCACAAGCTTTGATTGGTACCAACCTCGTTGACTGGCGGCCTCT
CAAAATCAACCTAGGACGCATCAGCAAAGCAGTTCACTGCCAGGGTACTT
GCCTCTATCCATCGCCGGGTATAGAGAGTAGTACCCTATGTCAAGGGCAA
CGCTTCCCACGCATTGAGAGGCCAGCAGAGGGAGCGGAGGCTTAGTAGGG
GTCACGTGCTGTGGACCCAAGTAGTACACCAAATAATATATCATGCTCCA
ATAGCGGCAATAACTTGCAGCACTTAGTCAAATCCCGTTGTTCACAGAGT
AGACCGCACCACACACCTTCCTATGACATACAACAAGCAAGAAGTACCGC
TGTAACAATCAAATTTAAAATTGGACTATGACTATTTAATACTATAGCCA
CTAATTCCGACAGCTTCAGGTCGTATCGTACCGTCCAAATTGCTTGTTAC
TACAGCATCCTCTTGGGGGGAAAGGTGAGTGGCTTTAACTAAACAAGTAC
GTAACCCAAATTCTCAAGCACAAGCCTCCCAACATTCAAAGAATCATAGC
TTGGCAACTGTATGCGCAAACCAATTTACGGCACTTGACGCAAAATTCAA
TCTCTATCTGAAATGTTGTCAACCGAAGTTGACGTTCAGGTAGTGCCACA
CAAAATCCAACTCAAATTTGAATATCTTCCAACGTTGTCAACGTTGAACA
TGTATTGCCGAACGGAGTCAGCCAATGGTTATTTCGTGCATTTTTCAATC
TCAACACTGTCTACCGCAGGTGACTTGAGTGGTCAAACTGCAGCCAAAGT
TCAATAAAAAATGCGCTTACTCGAGTCGACCAAGAAATCAACAGGGGGGG
GGCTTACTAAAATCCACTTCAAAATTCAGAAAATCACTTACAGTAAACTC
TCAAAATCCACTTTTTGAAATCCCAAGACAAGGTCCTAGTAGATCTCAAG
ATATTATGGTAATTCCCCATCGCTACGTCCCCAGGTGACCAGTAACGCTG
TGTGTTGACTATTATGCTGATCAACACCTACTACCTATACGAGTCAAATG
CAATAGCTCTAACGGTGGCCAGCATTACCTATCTCATGACCCCTGCGAAT
GACTTGCTTTCTTACTCATTCCCTCCCTTCCTAATCCGGGTGCTTGAGTA
AGGACGATAAAGTAGTACGAAACTCAACGATGAGTATTCATACTCCTAGC
CCAATCAACAACAACCGAGCAAATACCCAAGTCCAATTATCAATCAAACT
TACTAAAACTATCAATCAAGTTCAGTCTATGTTAGCCACCCTCAATAACA
AGCCACTCTGCGGCTAAGCGCACGCACGACTAACGGTCATGTCACTTCGA
CCGTTGGAATAGCATAATATTTTTTGTGGCAAAGGTTCACAAGTTCCAAG
TATTTTCTCGACAGAGGGCGTTGACGTTGTACTTGGAATAGATCTCACAA
CCCCCTCGCCGTGGTACTGCATCCTAAACTACGAGAATAAATCTAGATCC
ACGCTGCTAGCATCTTCGGCACTGTGTAGACCCGAGTGCTTTTGTAGGCA
CAACTTATCGCACAACATTTTACCAGGTCTGGCGTACCTCTAGACCGCGT
ACGGTACGAATGGGTTGGACGACGAGCTAACTCAGCAGGGGGCAAGTGCT
GTGGACCCAAGTGATACACCCAACATGCCATTCTCCAGTGGATACATATA
CGTAAGTCATCATGCTAAAAGATGTCGACCGGTTTCAACTGGAAGGGGAA
CCACAGCTATGACGAAAATCTGTGTTTTTTCAGGCGGCCAGGGTCATCCC
TGGAGCTGAGAGAGGAGCACACGTTTTTTTTTCTCTGAGACATGGGCTAT
TGGAGGAAAACAATACTAAAACATGACCGAAACTAAGTCAGGTAGCGATA
ATAAGAGTCACTTCAACCCTTTTTTCGTGGGGGTTAGGCCGGTTGAGTCG
TCCTACGACAGAGGGGTTACATCTGGCGTTATCACTCATGTCAGCAGGGG
CAGTCACTCGTGACGTTGACTGTTCGAATATAATGTGTTGACCAAATCAC
GTTGTTTTTTTTCCAGTTTCTTATTTTGACTCGCACTTGGAGTCATGTGG
CTTGATCCAGCAAAACGTATTTGCAATCCCGAACAGAGGTTGAGATATGG
TCACTCCCATCTGTAACTCGCCAACTTCGAAGCGAACCATTGAGGAGGTA
TCCCCTATATTGTAGGACGACTCGCTTCTTCAGCTTTAAGAGACCCAAAC
TATATTCTGTATTTTTTCGAGTTGTGTCCATGTCTCAGCCCTGACAGTGG
AGTTAATCCATCCACCCTGTTTTTAGTTGTTTTTCGCGTTCCAAATTCCG
AAAAATTACCAAATCCCTCGTCATCATTTTTCGATATTTGGCCCCCCTCC
CTTCAGTTGAAACGGCTCACCGTCACATTTTCCCATACGGATAGTATTAG
CAAAGTTCGCGTTTTTTTGCACGAAGAATAGAGCTCGTCATCGTATTCCC
CCCCTTTCAGTTGAAACAGCTCTCCATCAATCTCTAGAAGCTCTCCACCC
GTTCAAAATCACGTAGAAGAGGGGAATATGAAAGCCCGTACTATTGATGC
GTACACACAAATCACTTGTGTTGCGGTTGCGCTCAAACGTCCGCATTATA
CATCGGATAATGACCTCGGGAGGAGATAACCCCGCCCATAACTCAGTCTC
TTTTGACTGATGGTCCCGCGCTGGTAGGTATGTATGTTTTGTACCTTTGT
GCTTTCAGGGGCATCGAAGTGGCAGGGCAAGGCATGATGGTTAATATTCA
CGACGATGGTCAGGGTGGGGGGCCCTAGGTGTTATACTCACTCAGCAGCT
AGGCAGAGGTGGAAACGACCCGCTGCGTATGACGGTACCTTGTACCTTCT
TCGTAACCCATAAAAAATGCGGGCTACTCACGGTGCAATTCTGCATTCGT
GGTGTCGTTATTTACACAGCCTGCAAATCGTCGTTGTGGTGGGATAAGCA
TTTGTATAAACTCCTGTTGCGCCACTGGTATGGTACCACGGGCCACGGGG
GATGGACCTGCGCAAGTGTCCGGGCCTGCCCGCCCGTCACTTAGTTGGTT
TGTGGGTGAATCGCACTCGGCAGTACTTGTCGATTTGTTGATGATCATTA
TCATCACTTTCCTTTTTTAGTTTTCTTTTAACGTTTTAGCTACTTCGACC
CCGCCCCCGGTACCCACCCCTTCAACTCCGTGTGCGCCTTCTAACGCTCT
CGTGTCTTCAGGCACCTCTTCGTACACCAAGCAAAAAAACAGGAACAATA
GTAGTAGCACTGCTGGGGTATTAGTGAAACCACTGACCGATGACAGGTTG
ATCGCACCAAATAAAGGGTTGTCTTCTTCTGCCACAGTAGTACCAGTCGG
GTCTGCAGCGTTCTCGTTCCATGCATCATTGGTCTACTCGATCAGCAACC
ACAGTGTGCGATGGATCAGGTCAGACGTTTAGCCCGTATTATGTGGAGAG
GCGTGAGAGAAGCCCTCCCGCGAGTTAGGGAAAGAGTAATAGGTTTAACT
TACCTTCAAGTACGCCAAATGTAGTCGTTCGCTACAGTAGTATTCTCGCC
AATGGCTCCGCGATTTCGTTCTCGCTGTGCGACTCATCAACCGAAACAAA
ACTTCCCACCCTGTCTTTTTTATTTGCAGGGAGCAAGAGCGCATGATAAG
TGACGAAAATAACAGGGAGGCTTCTGGCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig5423:8144..13824-

>mRNA_H-paniculata_contig5423.12871.1 ID=mRNA_H-paniculata_contig5423.12871.1|Name=mRNA_H-paniculata_contig5423.12871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig5423:8144..13824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGGGAAGGCGGCAGATAGAGGAGGAGGCCAATGCAGTGGTGGTTA
TTTACAGCGCCAACCACATCAGCAACAATTGCACTACGCCTGGGAAGAGG
TGCAGCAACGACTATGGCCGGGAAGGCGGCAGATAGAGGAGGAGGCCAAT
GCAGTGGTGGTTATTTACAGCGCCAACCACATCAGCAACAATTGCACTAC
GCCTGGGAAGAGGTGCAGCAACGACTGGAGCAAGAGCGCATGATAAGTGA
CGAAAATAACAGGGAGGCTTCTGGCTCAGGAGCAAGAGCGCATGATAAGT
GACGAAAATAACAGGGAGGCTTCTGGCTCA
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