mRNA_H-paniculata_contig5422.12868.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5422.12868.1
Unique NamemRNA_H-paniculata_contig5422.12868.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5422.12868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5422contigH-paniculata_contig5422:3640..5764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5422.12868.1prot_H-paniculata_contig5422.12868.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5422 3830..5764 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.417279-UTR-H-paniculata_contig5422:3639..38291622930558.417279-UTR-H-paniculata_contig5422:3639..3829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5422 3640..3829 -
1691481347.5573857-UTR-H-paniculata_contig5422:3639..38291691481347.5573857-UTR-H-paniculata_contig5422:3639..3829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5422 3640..3829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.430523-CDS-H-paniculata_contig5422:3829..39791622930558.430523-CDS-H-paniculata_contig5422:3829..3979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5422 3830..3979 -
1691481347.5717955-CDS-H-paniculata_contig5422:3829..39791691481347.5717955-CDS-H-paniculata_contig5422:3829..3979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5422 3830..3979 -
1622930558.4439273-CDS-H-paniculata_contig5422:4225..42981622930558.4439273-CDS-H-paniculata_contig5422:4225..4298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5422 4226..4298 -
1691481347.5953963-CDS-H-paniculata_contig5422:4225..42981691481347.5953963-CDS-H-paniculata_contig5422:4225..4298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5422 4226..4298 -
1622930558.4683788-CDS-H-paniculata_contig5422:5669..57641622930558.4683788-CDS-H-paniculata_contig5422:5669..5764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5422 5670..5764 -
1691481347.607157-CDS-H-paniculata_contig5422:5669..57641691481347.607157-CDS-H-paniculata_contig5422:5669..5764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5422 5670..5764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5422.12868.1

>prot_H-paniculata_contig5422.12868.1 ID=prot_H-paniculata_contig5422.12868.1|Name=mRNA_H-paniculata_contig5422.12868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
DTNYQPTVARIHVSWRWTVTRAPSLACNWTRGRVKWPNQMLASSLSSGYS
RFTDYQASDPGPENRTHVINARRLADPSTGPTRPVPALRKRILHAPGHCA
RPLRA*
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mRNA from alignment at H-paniculata_contig5422:3640..5764-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5422.12868.1 ID=mRNA_H-paniculata_contig5422.12868.1|Name=mRNA_H-paniculata_contig5422.12868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2125bp|location=Sequence derived from alignment at H-paniculata_contig5422:3640..5764- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACGAACTACCAACCTACTGTAGCGCGCATTCATGTCTCTTGGCGTTG
GACGGTAACCAGGGCGCCCAGCTTGGCCTGCAATTGGACGAGAGGGTGAG
CTCGCGTGTTGCTACATCGAACCCTTTCATTTAGCGGCGTTCCTCTAGTA
CTTGTAGATCATTTTCCACAGTAAGAAATGGTCGGCTAATATGTCGTTTT
TTATATGGAGTTTTAACTGGGAGTGGGTTGCAACTTGTGGTATAGCGCCC
CCACCCCACCCCTTATCGTCACCTGTCCCATAGCCATACGAGCACACTTT
CTCTGCTTCTAGCCTTCCTTCCTTTCATGTGTTTGCCTGAAACGTGGTCC
ATCCGTGGCAATCTCCCGTCGCTGGCCCTGACAACTTCCGGAATTGTTTC
CCACGCCGGGACCACCATGATGCTTGACCTACATTTGCCATACTTTCCCC
TCGTGTTGTATGAATTATGAGACAAATTTTTATGGTAATTTGCCCGTGAA
CGTGGGTTTTTCCAACAATTGTTGACATGTTTATACCCCAGGTTTTGTAT
TGATAGGGCCCTGCTGTTCGACGTGAGTTCCTCTTCCAACTTAGATTGAC
GTGATCTCCTACGTGCTCCGTCAACTCAATTTTCGCTTGGGGTGTGTATT
GCAGGCGACCTTAGATGAAGGTTATTAGCTATCGCGTCGGCAACTCTCCT
CGTCGTTCAGACGTAAAGCCTTACACATTTTTTTTGTCATGTTTCCCACG
TTTTTTACCTGTGTTCCGATATGGAAAATCGTCTTTCTAATGCCTTTTGC
CCTCGGTTTTCACGAATTAAGAAACAGCTTATTTTAAGGTATTTTGTGCA
TGACCGGGACGACTAACTTATCGCTCGCACACTTTTTTTGCTTTTGAACG
AGGGGGAAGATAGATTCGAATTTATGCTTTGAGTTATTTTCCTTTCCGTA
TGTCAAAAGATCTCGACGCCAACCCGAAAACTATATACAGATGTTTTATT
TTGGGGGGGGTTGGATTTTGGTTGATTTTTAGTTTTTGGTCACGGAGAGG
ACAACAATATATTAAATATTTTTTAAATAGTAATATATTTGGGGGCAAGA
CAAGTACAGTGAATGTGCGAGCATCAAGTTGTTCGCGGCGTTCATGCACT
ATTTGGCGTTCTTTCTATTCTCGACTCTATAAGTTATCCCCGAGGGTCAA
TGGTCGTGTAATGTTGGTAATTCTGATAAGCATGACGTACACGTTTCAAA
ACACTCTGGTTCGGGTGGATAGAATGGTCGGATCACGCATCCATGTTACT
TCATTCTCTTGCTTAGAAGTTACCGCATTCGACCGTAATGGTTGTTTCGT
CTAACCAGTTCGTCGGATTCTTCATCGCTATGAACCTGACCACTTTCGCG
ATTGTTTACGAGGGTTGACGTGTTCCCATGGTCCTCATACTATTCTGTTC
AAACGCTTTGCTTCAGGCGGGTTAAATGGCCCAATCAGATGTTGGCGTCG
TCTCTTTCTTCGGGGTATTCGCGATTCACAGACTATCAGGTATGTATTTC
GATATTTTTGCTCGCTTGCAATCCATGATGTCCCTGTTTCGCTAAGTCCA
GCCGTTTACTTGTGGGGATACATCGTGTTTTCAGGAGCGATGGGGCCCGT
TACGTTACGAACGACAGTTGAGTGTGCCGCATGCCACTCCTGCACCCATT
GCGTTTGTGAGCTTCGGTGCTCAGAATGCTTATCTTAGTATATCCTCCTT
GTCTCTCTGTTGTTGCTTCCGCTTACAACGGCCAGGCATCAGACCCAGGG
CCAGAAAATCGGACTCATGTGATCAACGCTCGGCGTTTGGCAGACCCTTC
GACCGGCCCTACCCGGCCTGTCCCAGCCCTAAGAAAGCGCATCCTTCACG
CACCCGGACACTGTGCTCGACCACTCCGCGCATAGAAATACTACTCGTGT
TTTTAGATCCATGATCACACTGTTGTTCTCTGCCCTGAAGGACATAGTGT
TCATTACAGTCTCTTCCACGTCGCTGTTATGACCAGCTCGCGCTTGCCGT
TTGCGACTATTTTTAGAGCAAGTGTCGTTTCTATTGAGAGCACCGACGAT
TAAGGGTACCATTGCGGGGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5422:3640..5764-

>mRNA_H-paniculata_contig5422.12868.1 ID=mRNA_H-paniculata_contig5422.12868.1|Name=mRNA_H-paniculata_contig5422.12868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig5422:3640..5764- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACGAACTACCAACCTACTGTAGCGCGCATTCATGTCTCTTGGCGTTG
GACGGTAACCAGGGCGCCCAGCTTGGCCTGCAATTGGACGAGAGGGACAC
GAACTACCAACCTACTGTAGCGCGCATTCATGTCTCTTGGCGTTGGACGG
TAACCAGGGCGCCCAGCTTGGCCTGCAATTGGACGAGAGGGCGGGTTAAA
TGGCCCAATCAGATGTTGGCGTCGTCTCTTTCTTCGGGGTATTCGCGATT
CACAGACTATCAGGCGGGTTAAATGGCCCAATCAGATGTTGGCGTCGTCT
CTTTCTTCGGGGTATTCGCGATTCACAGACTATCAGGCATCAGACCCAGG
GCCAGAAAATCGGACTCATGTGATCAACGCTCGGCGTTTGGCAGACCCTT
CGACCGGCCCTACCCGGCCTGTCCCAGCCCTAAGAAAGCGCATCCTTCAC
GCACCCGGACACTGTGCTCGACCACTCCGCGCATAGGCATCAGACCCAGG
GCCAGAAAATCGGACTCATGTGATCAACGCTCGGCGTTTGGCAGACCCTT
CGACCGGCCCTACCCGGCCTGTCCCAGCCCTAAGAAAGCGCATCCTTCAC
GCACCCGGACACTGTGCTCGACCACTCCGCGCATAG
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