mRNA_H-paniculata_contig5418.12863.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5418.12863.1
Unique NamemRNA_H-paniculata_contig5418.12863.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5418.12863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5418contigH-paniculata_contig5418:6850..8590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930557.723667-CDS-H-paniculata_contig5418:6849..69421622930557.723667-CDS-H-paniculata_contig5418:6849..6942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5418 6850..6942 +
1691481347.2865207-CDS-H-paniculata_contig5418:6849..69421691481347.2865207-CDS-H-paniculata_contig5418:6849..6942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5418 6850..6942 +
1622930557.7375853-CDS-H-paniculata_contig5418:8405..85881622930557.7375853-CDS-H-paniculata_contig5418:8405..8588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5418 8406..8588 +
1691481347.2952466-CDS-H-paniculata_contig5418:8405..85881691481347.2952466-CDS-H-paniculata_contig5418:8405..8588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5418 8406..8588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5418.12863.1prot_H-paniculata_contig5418.12863.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5418 6850..8588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5418.12863.1

>prot_H-paniculata_contig5418.12863.1 ID=prot_H-paniculata_contig5418.12863.1|Name=mRNA_H-paniculata_contig5418.12863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
RVRGRASGDINEPRAEACDRVERSARPESYGASDKHSESFPVTVNARRRN
GVSSCAHNEGSGGKMTARVAVRNLDSGVYLAHRGIGRGRCAM
back to top

mRNA from alignment at H-paniculata_contig5418:6850..8590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5418.12863.1 ID=mRNA_H-paniculata_contig5418.12863.1|Name=mRNA_H-paniculata_contig5418.12863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1741bp|location=Sequence derived from alignment at H-paniculata_contig5418:6850..8590+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTTAGAGGGAGGGCGAGCGGCGATATTAATGAACCGAGGGCAGAGGC
GTGCGATCGCGTTGAACGCTCAGCGCGTCCGGAGAGCTATGGGGTGAGTA
AGACCATTTTTTTGTTGTGTGTTTTTTCTCTGTTTATGATATTGTTCGTG
GTGGTGAAAGAAAAGGAGTGCTAGTTGTTTGGTTTGCATACGTCTTTCGG
CTAAGGAGGTATATCACAGAGGCATGCTGGGTAGTTTTTTCTGCTGTTCT
TTGTCCTGCTGTCCTGTATCCTGTTGTCCGCCGGAAGGGTCAATCGTGAT
TCGTCTGTGCTTGGCGGCCTCCGTGCTGTATGCATTTTTGCCATGACAGA
CTGTCGGGAAGAACGGTATTGAGTCAACTGTTTTTGCCATGTACCGATGT
GTCCAGCAAAGCTACGGCAGCACAAACTACAGTTAGGGGTGCGCCTAAGT
CCTGAATAAGGCGGTAATTGTGTCCTAACATTTCGCATCAACCACGTACT
TTTGCCGGCTTTTTAGAGGGTTTGGTCCAAATAAGAAAAAATATATAGTT
GACGTCACCCCAAAAAAGACACACACACAACCATGAAGAGACCCAACGTC
ACCTGATAACATTCAAGGGTCGTTTGGCGTAGGAAGCGCGAAGAAGCGCT
GCGGCGGCTGCTGCTGCTGGTGTTGTGTTAACCACGTTAACCCCTTTTAT
CATGTACTGGTGCATCTTAAAGCTACACGGTAAAAAGGCCGAGCAAAGCT
AAGTTTTGAGTGGTTTGGGACCCTGAGAATGCTGGCAACAACAACGAGCT
ACAACCATCGCATTATGCCACGCGAAATATGCCCCTACAACCACCCAACG
TAACCCTAACGACCAGATGTGTGAAGAATGTTTACGTCCGAGAAGGATGC
CTTCTCCCGCACTCTAAATTCGAGTAGATTTGGGTGCGTTTTGGGTATTG
ATTGACCACTTTAAATTTGAGTAGTTTGGCTACTTGTTTGTGTTGATAGG
CTATCTTGTCGATAAATATACTCCTCAGCAAGGTCGTCGATTGGGATGCG
GTTTTTTGCGTTATGTGCGCGAAAATCACAGCGATGGATTTATTTTATGA
ATTTATCAAGTCGTGACGACGAAGCATCTTCACAGAGAAAGTAGCAAAAA
AAAAACACAATTTATTGGGGCGTTTGGAATTCTTTTAACGCGGATTAAAT
GTCCCATTAGAACAGGCTCTAAATTAGGCACATACCCCAGTGTGTGTCGA
GTCTCACGAGCCAACTCCCTAACCTGTATCGAGTATTTCAGCTTACAAGT
GCGTGGAAACCCGACACTGAATACAAATACTTTATGGGATGTAGGTGGCA
TTATCTATCAGGGGATATACACATTTTTTTCTTTATTCGGCACTTTATCG
ATGTGGTCGCTGTCGCCAGAATTTGGCTGCAAATCGAGGTTAGGCGCACC
CCTAACAGTATATATATTCCCTCTCGTTCCGGTCGCAACCAATCAATAAC
CTGCATTGCTTGTGTATCGCGCCGTTGCCTCGTTTAATCTTATGATAACG
TACCAGGCAAGCGACAAGCACAGCGAGTCATTTCCCGTGACGGTAAACGC
TAGGAGAAGAAACGGTGTTTCTTCATGTGCACACAATGAAGGGAGTGGAG
GGAAGATGACCGCGAGGGTGGCGGTTCGGAATTTAGATAGCGGAGTGTAC
CTTGCCCATAGAGGGATTGGTAGAGGCCGGTGTGCAATGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5418:6850..8590+

>mRNA_H-paniculata_contig5418.12863.1 ID=mRNA_H-paniculata_contig5418.12863.1|Name=mRNA_H-paniculata_contig5418.12863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig5418:6850..8590+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTTAGAGGGAGGGCGAGCGGCGATATTAATGAACCGAGGGCAGAGGC
GTGCGATCGCGTTGAACGCTCAGCGCGTCCGGAGAGCTATGGGAGGGTTA
GAGGGAGGGCGAGCGGCGATATTAATGAACCGAGGGCAGAGGCGTGCGAT
CGCGTTGAACGCTCAGCGCGTCCGGAGAGCTATGGGGCAAGCGACAAGCA
CAGCGAGTCATTTCCCGTGACGGTAAACGCTAGGAGAAGAAACGGTGTTT
CTTCATGTGCACACAATGAAGGGAGTGGAGGGAAGATGACCGCGAGGGTG
GCGGTTCGGAATTTAGATAGCGGAGTGTACCTTGCCCATAGAGGGATTGG
TAGAGGCCGGTGTGCAATGGCAAGCGACAAGCACAGCGAGTCATTTCCCG
TGACGGTAAACGCTAGGAGAAGAAACGGTGTTTCTTCATGTGCACACAAT
GAAGGGAGTGGAGGGAAGATGACCGCGAGGGTGGCGGTTCGGAATTTAGA
TAGCGGAGTGTACCTTGCCCATAGAGGGATTGGTAGAGGCCGGTGTGCAA
TG
back to top