mRNA_H-paniculata_contig5412.12857.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: D8LCT7_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT7_ECTSI) HSP 1 Score: 209 bits (532), Expect = 5.450e-61 Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = 3
Query: 279 LPPGGTISLGVSRAPSPEDDKEALLGRSTLGDGEKTWGFSTTDGGTAGTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGAAVSVAFAAASLAHHPPRKCQALVVGLDMI 671
LPPGGT+SLGVSR P P+D LL RS LGDGEKTWGF T+DGG AGTLKEGDVIGIALDFTDLPMLFF+RGG P G+GDELAVMRIRGTVYPA GV GGAA+SVAFA SLAH PPRKC+AL+VG DM+
Sbjct: 3 LPPGGTVSLGVSRRPPPDDASGELLSRSKLGDGEKTWGFCTSDGGAAGTLKEGDVIGIALDFTDLPMLFFTRGGDPLGEGDELAVMRIRGTVYPAFGVGGGAALSVAFAGDSLAHTPPRKCEALIVGQDMM 133
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: A0A7S4Q9N0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q9N0_9DINO) HSP 1 Score: 92.8 bits (229), Expect = 9.460e-18 Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 3
Query: 201 VSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLGVSRAPSPEDDK-EALLGRSTLGDGEKTWGFSTTDGGTAGTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGAAVSVAFAAASLAHHPPRKCQALV 653
VSG+G+ LG A VEQD+AYWE V +LP GG+ +GV+R P D A + ++W S+ + +L EGDV+G+A +LP L F G P G +V IRGTV PA V GGA +SVAF + PP + L+
Sbjct: 63 VSGSGVVLGGAEVEQDAAYWEVRVVSLPEGGSCCMGVARQTVPLDAALSAPMRPGAEAGAAQSWALSSL----SASLMEGDVVGVAFGLGELPNLRFFCNGEPLEVG---SVTHIRGTVCPAFSVHGGAVLSVAFERDGFRYPPPARFTELI 207
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: A0A7S2CN07_9STRA (SPRY domain-containing protein 7 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CN07_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.170e-17 Identity = 61/171 (35.67%), Postives = 91/171 (53.22%), Query Frame = 3
Query: 147 IHDNFRGSHVSVNASNGK-VSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLGVSRAPSPEDDKEALLGRSTLGDGEKTWGFSTTDGGTAGTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGAAVSVAFAAASLAHHPPRKCQALVV 656
I D+FRG +V V+ ++G G+AL AP+EQD+AYWE VT G I +GV+R + + + S + ++W TD T L++GDV+G+A DLP L F++ G D V +I GTVYP V + GGA++ F + + PP + L+V
Sbjct: 43 IPDDFRGPNVKVDTGESLCITGDGVALASAPIEQDAAYWEIHVTKT---GLIKVGVARKMN-RGELDKTFDASAKDENGRSWCLDGTD--TRANLEDGDVVGVAFTQADLPNLSFTKNGKAINFAD---VKKIPGTVYPVVMIGGGASIEAVFDPEKMNNQPPPTFKPLMV 204
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: A0A6U6ULS0_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6ULS0_9DINO) HSP 1 Score: 89.7 bits (221), Expect = 1.520e-16 Identity = 66/172 (38.37%), Postives = 85/172 (49.42%), Query Frame = 3
Query: 201 VSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLGVSRAPSPED-----DKEALLGRST-----------LGDGEKTWGFSTTDGG-----------TAGTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGAAVSVAFAAASLAHHPPR 635
+SGTG AL VEQD+AYWE + ALP G +GV+R P D ++ A G S+ +G + GF DGG T G L+EGDV+G+A LP L F R G G G V R+RG+V+PA V+GGA++SV F H PR
Sbjct: 47 LSGTGSALAEMEVEQDAAYWEVHILALPAGARCCMGVARQNIPLDAPLVSERAAPPGNSSDMDVFSLEPTAVGAPAEPDGFEQGDGGVEGQLAWALSSTGGALQEGDVVGVAFGQASLPNLRFMRNGEHTGAG---TVTRVRGSVHPAFSVSGGASLSVVFDPDGFRHQVPR 215
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: A0A7S4QBI5_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QBI5_9DINO) HSP 1 Score: 89.0 bits (219), Expect = 2.360e-16 Identity = 62/165 (37.58%), Postives = 83/165 (50.30%), Query Frame = 3
Query: 201 VSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLGVSRAPSPED---------DKEALLGRSTLGDG-----EKTWGFSTTDGGTAGTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGAAVSVAFAAASLAHHPPRKCQALV 653
VSG+G+ LG A VEQD+AYWE V LP GG+ +GV+R P D D E L + L + +W S+ + L EGDV+G+A +LP L F G P +G +V +RGTV PA V GGA ++V F + PP K L+
Sbjct: 57 VSGSGVVLGGAEVEQDAAYWEVRVVTLPEGGSCCMGVARQSVPLDAPLVAPARPDPEVLGAATDLAEAGAAPASVSWALSSA----SALLNEGDVVGVAFGQGELPNLRFFCNGEPLERG---SVAHVRGTVCPAFSVHGGAVLTVTFEHDGFRYTPPAKFTELI 214
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: F0Y3A2_AURAN (SPRY domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3A2_AURAN) HSP 1 Score: 82.8 bits (203), Expect = 1.510e-14 Identity = 68/171 (39.77%), Postives = 87/171 (50.88%), Query Frame = 3
Query: 165 GSHVSV--NASNGKVSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLGVSRAPSPEDDKEALLGRSTLGDGEKTWGFSTTDGGTAGTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGAAVSVAFAAASLAHHPPRKCQALVVGLDMI 671
G VSV +A+ + G+G+A +EQD+AYWE V A G +GV R + EA LG LGDG+ +W D AG + EGDVIG+A +LP L F G G V RIRG V+PA V GGA + F A+ H PPR AL V ++I
Sbjct: 33 GGDVSVESSATGDALGGSGVAYTSTAIEQDAAYWELHVEAA---GPFRVGVCR-----ELGEAQLG-GELGDGQTSWAL---DSAAAGAV-EGDVIGVAFGQAELPNLSFFLNGELLEHG---MVNRIRGEVFPAASVTGGAKLRCVFDEANFEHAPPRTHSALRVTQNII 187
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: K0T616_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T616_THAOC) HSP 1 Score: 65.9 bits (159), Expect = 2.830e-8 Identity = 60/153 (39.22%), Postives = 72/153 (47.06%), Query Frame = 3
Query: 198 KVSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLG--------VSRAPSPEDDKEAL-LGRSTLGDGEKTWGFSTT----------DGGT-----AGTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGA 584
KVSG+GLAL PVEQD+AYWE V+ PG T G V E+D A+ G +T D E T D GT L+ GDVIG+AL +DLPM+ G P E + R RGTVYPAV + GA
Sbjct: 55 KVSGSGLALTRIPVEQDAAYWEIHVSI--PGQTAPSGDEDGDLQDVDVNDDGEEDPYAVKFGVATRKDREFYRSLETVEEEGDQASSRDDGTFLMRPISNLRHGDVIGVALQQSDLPMIQILLNGEPLL---ECIINRFRGTVYPAVYMPAGA 202
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: A0A1Z5JFB4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFB4_FISSO) HSP 1 Score: 61.2 bits (147), Expect = 5.180e-7 Identity = 50/131 (38.17%), Postives = 65/131 (49.62%), Query Frame = 3
Query: 198 KVSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLGVSRAPSPEDDKEALLGRSTLGDGEKTWGFSTTDGGTA-GT-------LKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAV 566
K+SG GL L VEQD+AYWEA + P G+S+ E G +T D + D A GT +K+GDV+GIA+ +DLPM+ F G P +LAV R RG VYPA+
Sbjct: 49 KMSGYGLGLVGVAVEQDAAYWEAHIQHDP-------GMSQ--------EVSFGVATKKDQQFYRSMEEQDSADAKGTSLMRSIKVKDGDVVGIAVQQSDLPMVQFLLNGEPL---HDLAVNRFRGAVYPAI 161
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: B8BUW6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUW6_THAPS) HSP 1 Score: 61.2 bits (147), Expect = 4.200e-6 Identity = 55/158 (34.81%), Postives = 74/158 (46.84%), Query Frame = 3
Query: 198 KVSGTGLALGCAPVEQDSAYWEATV----TALPPGG--------------------TISLGVSRAPSPEDDKEALLGRSTLGDGEKTWGFSTTDGGTA-----GTLKEGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAVGVAGGA 584
KVSG+GLAL P+EQD+AYWE V PP I GV+ +D L ++ +G++T S+ D GTA L+ DVIG+A+ +DLPM+ F G P E + R RGTV+PAV + GA
Sbjct: 61 KVSGSGLALAKIPIEQDAAYWEWHVHLPGLPRPPXXXXXXDEFHDVQMNGESDDPYAIKFGVATR---KDRNFYKLLQNVEDEGDET---SSQDDGTALMRAIPNLRHNDVIGVAVQQSDLPMIQFLLNGEPL---PECTINRFRGTVFPAVYIPVGA 209
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Match: A0A7S2KX06_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KX06_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.830e-5 Identity = 52/165 (31.52%), Postives = 71/165 (43.03%), Query Frame = 3
Query: 120 AASSSKPFTIHDNFRGSHVSVNASNGK--VSGTGLALGCAPVEQDSAYWEATVTALPPGGTISLGVSRAPSPEDDKEAL--------LGRSTLGDGEKTWGFSTTDGGTAGTLK------EGDVIGIALDFTDLPMLFFSRGGAPFGQGDELAVMRIRGTVYPAV 566
AA SS + G N +NG + G GLAL +EQDSAYWE I +G + E D+ A STL + S D L+ +GD++G+A+ +DLPM+ F G P +A+ R RG+VYPAV
Sbjct: 28 AAHSSSTIEVTKGATGDEEECNNNNGDQIIRGKGLALSSVSIEQDSAYWE-----------IRIGTTDGQDDEHDENAFEILKFGVAKQCSTL-ELNSIQDISEDDDSNRFFLRGIPNLVDGDIVGVAVQQSDLPMVQFIINGEPL---HHMAINRFRGSVYPAV 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5412.12857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5412.12857.1 >prot_H-paniculata_contig5412.12857.1 ID=prot_H-paniculata_contig5412.12857.1|Name=mRNA_H-paniculata_contig5412.12857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp MGCCESMMRVILGSGSMGSSGDSGSGSVEFGGAASSSKPFTIHDNFRGSHback to top mRNA from alignment at H-paniculata_contig5412:601..9129- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5412.12857.1 ID=mRNA_H-paniculata_contig5412.12857.1|Name=mRNA_H-paniculata_contig5412.12857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8529bp|location=Sequence derived from alignment at H-paniculata_contig5412:601..9129- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5412:601..9129- >mRNA_H-paniculata_contig5412.12857.1 ID=mRNA_H-paniculata_contig5412.12857.1|Name=mRNA_H-paniculata_contig5412.12857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig5412:601..9129- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |