mRNA_H-paniculata_contig5411.12854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5411.12854.1
Unique NamemRNA_H-paniculata_contig5411.12854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: A0A6H5KHN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.660e-26
Identity = 77/191 (40.31%), Postives = 92/191 (48.17%), Query Frame = 2 
Query:    5 DVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRIVDSEATRRLQAEMDSTADQHRHPDGSXXXXXXXXXXXXXXXXXXXXTTP--------------------------------------------------------------VTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMKYT 391
            DVGAVVGD GSYSCKMGFAGEDFPRAY  S++GR VD EATRRL+AEM +  D  R P  +               XXX   +P                                                              VTDW+L+E+VWEHA  TRLK +L+DH +L+SEKPFN+S +RM YT
Sbjct:   40 DVGAVVGDGGSYSCKMGFAGEDFPRAYLTSLIGRTVDLEATRRLEAEMGAAVDSARSPAKAGGERGGATARRMWHPXXXPTGSPSGEARGPQFRRPCRGAQGNQKGAPRTERRRTGGTGGRFIDGTGYLMGGGADMDVLPLMEDGFVTDWDLIEKVWEHAERTRLKTKLSDHQVLISEKPFNSSKERMMYT 230
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: D8LHI8_ECTSI (Protein binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.460e-20
Identity = 64/174 (36.78%), Postives = 78/174 (44.83%), Query Frame = 2 
Query:   50 MGFAGEDFPRAYFPSVVGRIVDSEATRRLQAEMDSTADQHRHP------------------------------------------------------DGSXXXXXXXXXXXXXXXXXXXXTTP------VTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMKYT 391
            MGFAGEDFPRAYF S++GR VD EATRRL+AEMD+  D    P                                                      +G                       P      VTDW+L+E+VWEHA  TRLK +L+DHP+L+SEKPFN+S +RMKYT
Sbjct:    1 MGFAGEDFPRAYFTSLIGRTVDLEATRRLEAEMDAAVDSAGSPARARAGGNXXXKAAPSPPANGQPQRGGKGAAASPAVPGGSGESEGGAANGEEKDEGDGRTVYRWHVDSLMGGGADMDVVPLMEDGFVTDWDLMEKVWEHAERTRLKTKLSDHPVLISEKPFNSSKERMKYT 174
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: A0A833QU34_9POAL (Actin-related protein 4 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QU34_9POAL)

HSP 1 Score: 85.1 bits (209), Expect = 4.880e-14
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 2 
Query:    2 DDVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRI----VDSEATRRLQAEMDSTADQH---RHPDG----SXXXXXXXXXXXXXXXXXXXXTTP-----VTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMK 385
            D+V A+V D+GSYSCK G+AGED P+A FPS VG I    VDSEA  + + E DS  D     + PD     +                     +P     V DW++++ +W HA   RL +  T+HP+L++E   NT+H R K
Sbjct:    5 DEVSAIVVDLGSYSCKAGYAGEDAPKAVFPSAVGSIDQMEVDSEA--KPEKESDSAQDPKSSAKPPDNDKSKAKRKLYVGTQALDYRRDHMEVISPFKDGVVVDWDMVDNIWNHAFRQRLLIDPTEHPMLLAESSINTAHQREK 146
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: ARP4A_ARATH (Actin-related protein 4A n=5 Tax=Arabidopsis thaliana TaxID=3702 RepID=ARP4A_ARATH)

HSP 1 Score: 79.3 bits (194), Expect = 6.490e-14
Identity = 48/135 (35.56%), Postives = 69/135 (51.11%), Query Frame = 2 
Query:    2 DDVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRI------VDSEATRRLQA-EMDSTADQHRHPDGSXXXXXXXXXXXXXXXXXXXXTTPVTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMK 385
            D+V A+V D+GS++CK G+AGED P+A FPSVVG I      +D  A     A E D    + +   GS                       VTDW++++ VW+HA    L +  T+HP+L++E P N+   R K
Sbjct:    5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGI---VTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: A0A804K841_MUSAM (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A804K841_MUSAM)

HSP 1 Score: 82.0 bits (201), Expect = 5.220e-13
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 2 
Query:    2 DDVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRIVDSEATRRLQAEMDSTA--DQHRHPDGSXXXXXXXXXXXXXXXXXXXXTTP-----VTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMK 385
            D+V A+V D+GSY+CK G+AGED P+A FPS VG I  + AT  ++ E DS +  D                             +P     V DW++++ +W HA   RL +   +HP+L++E  FNT   R K
Sbjct:    5 DEVSAIVLDLGSYTCKAGYAGEDAPKAVFPSAVGSIYQAGATDEVKHEKDSDSMYDSENADKIKTRKLYVGTQALGYRRDHMEVISPIKDGVVVDWDIVDNIWNHAFRERLLIDPKEHPMLLAEPSFNTPQQREK 139
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: W7TUS4_9STRA (Actin related protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUS4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.440e-13
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 2 
Query:    5 DVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRIVDSEATRRLQAEMDSTADQHRHPDGSXXXXXXXXXXXXXXXXXXXXTTPVTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMKY 388
            ++ AVV ++G Y+ ++GFAGED+PR+YFPS  G I   ++T R      S  +  +                            V DW+++E++W+HA +T L V L   P+L+ E+ FNTS  R +Y
Sbjct:    9 EMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEY 136
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: UPI001D1A3E79 (actin-related protein 4-like isoform X2 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI001D1A3E79)

HSP 1 Score: 78.6 bits (192), Expect = 6.150e-13
Identity = 47/141 (33.33%), Postives = 70/141 (49.65%), Query Frame = 2 
Query:    2 DDVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRIVDSEAT--RRLQAEMDSTADQHRHPD------GSXXXXXXXXXXXXXXXXXXXXTTP-----VTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMK 385
            D+V A+V DVGSYSCK G+AG+D P++ FPSVVG I  +E T   + + E DS +D                                   +P     VTDW++++ +W HA   RL +   +HP+L++E   N++  R K
Sbjct:    5 DEVSAIVIDVGSYSCKAGYAGDDTPKSVFPSVVGSIEQAEDTDEAKPEKEADSASDPKNGSKPMDVDKAKTKRKFYVGQELEFRRDHMEVISPMKDGTVTDWDVVDNIWNHAFRRRLLINPEEHPMLIAEPSINSAQQREK 145
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: A0A812X7D1_SYMMI (ARP4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X7D1_SYMMI)

HSP 1 Score: 81.3 bits (199), Expect = 9.180e-13
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 2 
Query:    2 DDVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRIVDSEATRRLQAEMD------STADQHRHPDGSXXXXXXXXXXXXXXXXXXXXTTPVTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMK 385
            DD+GA+V D+GS S ++GFAG+D PRAY PS VG   D +A   +Q   D      +   QH   DG                        V+DW+ L+++WEH+  + LKV L + P+L +EK +N+S  R K
Sbjct:    6 DDIGAIVADIGSTSTRVGFAGDDVPRAYLPSCVGVTTDEDANS-VQYHCDISYFRENMRIQHAMRDGL-----------------------VSDWDALQQLWEHSVASYLKVDLKETPVLFAEKVYNSSTSRQK 115
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: A0A446UJJ9_TRITD (Uncharacterized protein n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UJJ9_TRITD)

HSP 1 Score: 78.6 bits (192), Expect = 9.700e-13
Identity = 47/141 (33.33%), Postives = 70/141 (49.65%), Query Frame = 2 
Query:    2 DDVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRIVDSEAT--RRLQAEMDSTADQHRHPD------GSXXXXXXXXXXXXXXXXXXXXTTP-----VTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMK 385
            D+V A+V DVGSYSCK G+AG+D P++ FPSVVG I  +E T   + + E DS +D                                   +P     VTDW++++ +W HA   RL +   +HP+L++E   N++  R K
Sbjct:    5 DEVSAIVIDVGSYSCKAGYAGDDTPKSVFPSVVGSIEQAEDTDEAKPEKEADSASDPKNGSKPMDVDKAKTKRKFYVGQELEFRRDHMEVISPMKDGTVTDWDVVDNIWNHAFRRRLLINPEEHPMLIAEPSINSAQQREK 145
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BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Match: A0A811MA59_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811MA59_9POAL)

HSP 1 Score: 80.1 bits (196), Expect = 2.410e-12
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 2 
Query:    2 DDVGAVVGDVGSYSCKMGFAGEDFPRAYFPSVVGRIVDSEATR--RLQAEMDSTADQHRHPD------GSXXXXXXXXXXXXXXXXXXXXTTP-----VTDWELLERVWEHAAETRLKVRLTDHPILVSEKPFNTSHDRMK 385
            D+V A+V DVGSYSCK G+AG+D P+A FPSVVG I  +E T   +   E DS +D                                   +P     VTDW++++ +W HA   RL +   +HP+L++E   NT+  R K
Sbjct:    5 DEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTEDTDDPKPDKEADSASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRRRLLINPEEHPMLIAEPSTNTAQQREK 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5411.12854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHN4_9PHAE1.660e-2640.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHI8_ECTSI2.460e-2036.78Protein binding protein, putative n=2 Tax=Ectocarp... [more]
A0A833QU34_9POAL4.880e-1437.50Actin-related protein 4 n=1 Tax=Carex littledalei ... [more]
ARP4A_ARATH6.490e-1435.56Actin-related protein 4A n=5 Tax=Arabidopsis thali... [more]
A0A804K841_MUSAM5.220e-1334.81Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]
W7TUS4_9STRA5.440e-1332.81Actin related protein n=2 Tax=Monodopsidaceae TaxI... [more]
UPI001D1A3E796.150e-1333.33actin-related protein 4-like isoform X2 n=1 Tax=Ho... [more]
A0A812X7D1_SYMMI9.180e-1336.57ARP4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A446UJJ9_TRITD9.700e-1333.33Uncharacterized protein n=3 Tax=Triticum turgidum ... [more]
A0A811MA59_9POAL2.410e-1234.75Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5411contigH-paniculata_contig5411:2842..6859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog2880.D8LHI8
Preferred nameACTL6A
KEGG koko:K05692,ko:K11340,ko:K11400,ko:K11652,ko:K11767
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000228,GO:0000278,GO:0000281,GO:0000785,GO:0000790,GO:0000812,GO:0000902,GO:0000904,GO:0000910,GO:0001654,GO:0003407,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016358,GO:0016514,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016586,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031011,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031493,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032984,GO:0032986,GO:0032989,GO:0032990,GO:0032991,GO:0033202,GO:0033554,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035060,GO:0035267,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042393,GO:0042766,GO:0043010,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051716,GO:0060041,GO:0060147,GO:0060148,GO:0060255,GO:0060303,GO:0060964,GO:0060966,GO:0060968,GO:0061640,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070646,GO:0070647,GO:0070925,GO:0070983,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097346,GO:0097458,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1904949,GO:1990234,GO:2000112,GO:2000637,GO:2001141
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0679@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_002660.2
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Exons3
Model size1588
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5411.12854.1prot_H-paniculata_contig5411.12854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5411 2891..5863 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930556.6265314-UTR-H-paniculata_contig5411:2841..28901622930556.6265314-UTR-H-paniculata_contig5411:2841..2890Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5411 2842..2890 +
1691481346.7548792-UTR-H-paniculata_contig5411:2841..28901691481346.7548792-UTR-H-paniculata_contig5411:2841..2890Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5411 2842..2890 +
1622930556.6862514-UTR-H-paniculata_contig5411:5863..68591622930556.6862514-UTR-H-paniculata_contig5411:5863..6859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5411 5864..6859 +
1691481346.8092635-UTR-H-paniculata_contig5411:5863..68591691481346.8092635-UTR-H-paniculata_contig5411:5863..6859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5411 5864..6859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930556.6384118-CDS-H-paniculata_contig5411:2890..29351622930556.6384118-CDS-H-paniculata_contig5411:2890..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5411 2891..2935 +
1691481346.7738452-CDS-H-paniculata_contig5411:2890..29351691481346.7738452-CDS-H-paniculata_contig5411:2890..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5411 2891..2935 +
1622930556.6565247-CDS-H-paniculata_contig5411:3671..38341622930556.6565247-CDS-H-paniculata_contig5411:3671..3834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5411 3672..3834 +
1691481346.7896528-CDS-H-paniculata_contig5411:3671..38341691481346.7896528-CDS-H-paniculata_contig5411:3671..3834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5411 3672..3834 +
1622930556.6730163-CDS-H-paniculata_contig5411:5528..58631622930556.6730163-CDS-H-paniculata_contig5411:5528..5863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5411 5529..5863 +
1691481346.8005857-CDS-H-paniculata_contig5411:5528..58631691481346.8005857-CDS-H-paniculata_contig5411:5528..5863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5411 5529..5863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5411.12854.1

>prot_H-paniculata_contig5411.12854.1 ID=prot_H-paniculata_contig5411.12854.1|Name=mRNA_H-paniculata_contig5411.12854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
MGFAGEDFPRAYFPSVVGRIVDSEATRRLQAEMDSTADQHRHPDGSSSSS
SSNKGKSPSKRKRTETTTPVTDWELLERVWEHAAETRLKVRLTDHPILVS
EKPFNTSHDRMKYTVRQEKLESMNKKTLPSSLCRTFPNFKIGASTTSNPP
DTSSVGFTLSYSETWRSMGETPAAMLSEQL*
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mRNA from alignment at H-paniculata_contig5411:2842..6859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5411.12854.1 ID=mRNA_H-paniculata_contig5411.12854.1|Name=mRNA_H-paniculata_contig5411.12854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4018bp|location=Sequence derived from alignment at H-paniculata_contig5411:2842..6859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGATGTGGGCGCTGTCGTGGGCGACGTGGGCTCTTACTCTTGCAAGA
TGGGCTTTGCCGGAGAGGACTTTCCCAGGGCTTACTTCCCATCGGTAAGA
AGCAGGCTGAGGGTCAATCGCTCGGTTTGGATCGACTGGGTTGTTTGTTC
GCTTGCATGGCTTTGATGACCTGATGAGTTCTGCTGTGCTTAATTATTGA
ACGACGCTCTTGCTACAGTGAAGAAAGCATACACGAGTCTATAGCATATA
CGGTAGGCCTGCAGTGTACCTGGAAACGTGTTATGTTTCTACCAACGACG
AGCGCGACAAGCAATAATTTGGTTAAAGCCTCTACCAAACCATCCCACTC
CCACCCTCGAACTACATTTTTATAGCTCACTTGCTGATGATCCCGTATAC
AGGGAGGAAGAGCATATATATTGACCCCCCCCTACTGCTTACTAACACTT
TCGTTCCCTTACTGACTTCATTTTGCTGATGAGTGAATATACAGCTGCAG
ATGAACGTTAGCTGCATAACTTCAACAAAAGTACAATGGAGTCATTAGAT
GACGTTAGATCTATCGTTCAACTGGCTATGACAGGGTCCATCTACTACAG
TAATGAGAATTTCAGCCAGTGAAATGAAGTCAAGGGTGGTTCTTAATTTT
CAAGGTGTCGGTTGTTTCAATGAGAAATATTTCATGTTTTATCTACAATA
GATGCGAGCGATACAGTCTTTAGTCCCCCCCCCCCCCCTCCGAGTATCCT
TCCGTCATCTCCACCCGCTCTCGCCTCTTTATCTCGCCCCCCTCCCTCTC
CCCGTATTCGTCTGCATATCATGTCTATAGGTGGTCGGTAGAATTGTAGA
CTCGGAAGCAACGAGGCGATTGCAGGCGGAGATGGACTCCACGGCAGATC
AACATCGTCACCCCGACGGCAGTAGCAGCAGCAGTAGCAGTAATAAGGGG
AAATCTCCGTCGAAACGGAAGAGGACAGAGACCACAACACCGGGTACGCG
GGGTGGAGGGCTAACGCTGCCACAGGGACCGCCCGACAGCGGCGGAGGCG
GAAGCGGGGGGGGAGTCGGGGAGGGAGGGACAGATCGGGGTGATGGGGCG
GATGTGGTGTATCGATGGCACGTAGATAACTTGATGGGCGGAATGGACAT
GGACCTCTTGCCTGTGATGGAAGCGGGTGTAGGTGGGTGGCAGAAACCAT
GGTAGAGAGGACAGTGTGTTTTTTTTTTCATGCAAAAGCATCCAGATCGT
TCCACAGGTACAGAGACTTGTACGAAAAGTGTAGATTCCACCCACATAGT
AGTACGGTAGGTACACTACGTCGTTTCTCAGCAAGCTTCCTTCCCAGATG
CAAGGAGGGCAGTTAAGGAGAAGGTTTACCGGGTGGCGCTTCGCATGGGT
GAAAAAAACAGGAAATAGCATAGACTTGAGTAAAGAACACCTGACCTACA
TAGTAGGCACACAGGCAGCGGGGATATATTAGTTTTTTTACGATCGGCGA
CTCTGGATAGTGACTTCAAAGGATGTCCCAACTGAAGTGAACCCCTCGAT
ATCTCTTGCGGTTTGTTTCTAGATACGTGGAGAAGGTTTGTGTCGTATTT
GACTTGTTTATTGATTGTTATTAATGAGACAGAACCGTCATGGATGAAGC
GGTGAGGAAGTAGATGTGCTCGTTCGTACATACGAGGGTACTCGGTAGCT
TCACGGACGTGCATACATTAGGTATATTTTGAACAACTGAGGAATGTGCT
CAGAAGGTTCCCGAGGCGTGTTTTATTCTTCAAGACCTAAGTCTTGATTA
TGGATCTTGTTATATTCCGGATTGGTACAAGTTCAGATTGAGCTTTTTTC
CTGGAGTTTTTGGTTGTACGGTTCAAGGCTGTGGGACTGAGCGAGTCCTC
CATTCCCCTCTCTCTCCGTAGCTATTTCGGTGACGCGCTTTGATTTCCCT
CCGTTCCCTTTATGATAGAAGTTATTCGACATAACCTGAAAACTATACGT
ATCTTGCGTGCCGAGCCACACCGAGGCTGTTCAAGCTTCAGAGGCAAAGA
GTAGTGCTCTTTCGGGGTAGCGGGGTAGTGTAGGTGGGGGCGAGAAGGAA
ACAGCTGCTAGCGCGGGCTGTCCCGAGGGGGGAACTCTGGTTTTCTTGCT
GTTGTCTTGTCTGTTTCTGGGTCTCTTCATGGCAGAGGCTGTGTTTCTGT
TTTGCTTGTCCTTGTACAACATTATGGGCTTGGACAGTTGGAATTTTACA
GATAGTCGTGCTTTTGTTTTTCTTTGGCAGGTGAAAACAGTTGTTGCTAA
AGAGCTGTGAGATGTGATATATTACTTTCGTTATAAGCATTGGTTGATCA
TACATTAGTTCCCTTTACCCCGCCCCTCCTTCCCTCCCTCCCTCCCTCTA
CTCCAAGTGCCCACTTGCATACGCGGGGTATTTTATCGCCGCTGCTGTTA
CCTTTTGGTGATTGTTTGTTAATCGTTGAATGGAAGCGTAAAACTTATTG
TATGATAGCTGAACACCTATGGATACACAAATGCATGTCAAAAGTGAAAA
GCACAACGGCCGTAGTGGGCAACGTGGCGGGCCAAACGACTTACACACAA
GACACACTTAAAAAGACGCGCATTTTCCTGTTCGATTTTTTTGCATCTCG
TCGTTGGTTTCGCTTTGGCGTCGTTGTTCGTTCGCAGTCACCGACTGGGA
GCTGCTGGAGCGAGTTTGGGAACACGCGGCCGAGACGCGGTTGAAGGTCC
GGCTGACGGACCACCCCATTCTCGTGTCGGAAAAGCCGTTCAACACATCT
CACGACCGGATGAAGTACACGGTGAGACAAGAAAAATTAGAGTCAATGAA
TAAAAAGACTCTACCATCGTCTCTCTGTCGAACGTTTCCAAATTTCAAAA
TTGGCGCATCCACCACTTCGAACCCTCCCGACACGAGCTCTGTCGGGTTT
ACCTTATCTTACAGTGAAACTTGGAGAAGCATGGGAGAAACTCCCGCCGC
AATGCTCAGCGAGCAACTCTAAGCTAGGCTTGACCTCTTGACAGTCCCTC
TGGTCACTCAATTCCGCTTGCATGCTCATATTTGGGTCACAGTTGCGGCC
CTTCCCAAGAGCTTTTGGGGGGTGGATCGTTTTGCTTGTCCATTTCGTCA
CCTTTTTCGTAACGGCTAAGTCAGCAATCTCACGCACGCGACACGCCCCT
TTGTCTCTGCTATCTTCGTCAGCGCCAAACAGTGATCTCCAACAGACATC
AAGGAACGCTTGACTCTGTGCATGCCATCGTGCTCGAGCAGCAGTTGCGG
CATGGCTTGCTTCGATGATGCTTGTTGTAAGGTGCTGGGCACATGAAGTG
GTCACCAGAAATTTTGAAAATTAAAAGTGGACGGGTTCGAGAATTTCGCT
TTAGGGAAATGGGGGGTTGGATGATAAACCCCATTTACCTATGAAATCTG
GAAGATGGCTATAAATAGCTTTGCAACAAATCCGATTTTTTTCCGCGCGC
GCGGTTCGGTATAGTCGTTGAGATATGGAGTATTTTGTGCCCCAACTGGC
TGCCATCAGCAGTCAACACTTCACCATGAGTGATCTACGGGGAACCGCAA
GCTATATCCCGGCGCGATAGAATGCTCTCGTCAGTTGCTTTCCAGCGTAT
ATCTCAGATTCGCTGAATTCGAATAACCCCTAAAAGATCTCAATCACAGG
GGTTGATCTCAGTCTCCTTGTTGCTTGCTGCCACCGTACATACATAACCT
CGGCATGAAGTACGCATTTATTCCGTAAAACTACCAGAAGTAAGAGTGTT
GGGCATAAGATACGTATTTTCTCCCCGCGACCCCCCCCCCCAGTTTTGAA
CCACATTTCACATTGGCAACGTAGGAAAGAGCGATTGCCCATCGGAAGTT
GCTCTAATAGAAACAAAAGTCCGTCCTCCGGAGGATACGTAGTCTGTAAG
TGGTCTAACAACTACGGCATGCAAAATATGAATGATCCCCCCCCCCCCCC
CCCGTGGGCATCCATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5411:2842..6859+

>mRNA_H-paniculata_contig5411.12854.1 ID=mRNA_H-paniculata_contig5411.12854.1|Name=mRNA_H-paniculata_contig5411.12854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig5411:2842..6859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTTTGCCGGAGAGGACTTTCCCAGGGCTTACTTCCCATCGATGGG
CTTTGCCGGAGAGGACTTTCCCAGGGCTTACTTCCCATCGGTGGTCGGTA
GAATTGTAGACTCGGAAGCAACGAGGCGATTGCAGGCGGAGATGGACTCC
ACGGCAGATCAACATCGTCACCCCGACGGCAGTAGCAGCAGCAGTAGCAG
TAATAAGGGGAAATCTCCGTCGAAACGGAAGAGGACAGAGACCACAACAC
CGGGTGGTCGGTAGAATTGTAGACTCGGAAGCAACGAGGCGATTGCAGGC
GGAGATGGACTCCACGGCAGATCAACATCGTCACCCCGACGGCAGTAGCA
GCAGCAGTAGCAGTAATAAGGGGAAATCTCCGTCGAAACGGAAGAGGACA
GAGACCACAACACCGGTCACCGACTGGGAGCTGCTGGAGCGAGTTTGGGA
ACACGCGGCCGAGACGCGGTTGAAGGTCCGGCTGACGGACCACCCCATTC
TCGTGTCGGAAAAGCCGTTCAACACATCTCACGACCGGATGAAGTACACG
GTGAGACAAGAAAAATTAGAGTCAATGAATAAAAAGACTCTACCATCGTC
TCTCTGTCGAACGTTTCCAAATTTCAAAATTGGCGCATCCACCACTTCGA
ACCCTCCCGACACGAGCTCTGTCGGGTTTACCTTATCTTACAGTGAAACT
TGGAGAAGCATGGGAGAAACTCCCGCCGCAATGCTCAGCGAGCAACTCTA
ATCACCGACTGGGAGCTGCTGGAGCGAGTTTGGGAACACGCGGCCGAGAC
GCGGTTGAAGGTCCGGCTGACGGACCACCCCATTCTCGTGTCGGAAAAGC
CGTTCAACACATCTCACGACCGGATGAAGTACACGGTGAGACAAGAAAAA
TTAGAGTCAATGAATAAAAAGACTCTACCATCGTCTCTCTGTCGAACGTT
TCCAAATTTCAAAATTGGCGCATCCACCACTTCGAACCCTCCCGACACGA
GCTCTGTCGGGTTTACCTTATCTTACAGTGAAACTTGGAGAAGCATGGGA
GAAACTCCCGCCGCAATGCTCAGCGAGCAACTCTAA
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