mRNA_H-paniculata_contig5406.12847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5406.12847.1
Unique NamemRNA_H-paniculata_contig5406.12847.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5406.12847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5406contigH-paniculata_contig5406:9865..10819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size590
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5406.12847.1prot_H-paniculata_contig5406.12847.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5406 10475..10819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930555.4418814-UTR-H-paniculata_contig5406:9864..99991622930555.4418814-UTR-H-paniculata_contig5406:9864..9999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5406 9865..9999 +
1691481346.2760246-UTR-H-paniculata_contig5406:9864..99991691481346.2760246-UTR-H-paniculata_contig5406:9864..9999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5406 9865..9999 +
1622930555.46112-UTR-H-paniculata_contig5406:10364..104741622930555.46112-UTR-H-paniculata_contig5406:10364..10474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5406 10365..10474 +
1691481346.2849286-UTR-H-paniculata_contig5406:10364..104741691481346.2849286-UTR-H-paniculata_contig5406:10364..10474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5406 10365..10474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930555.4761024-CDS-H-paniculata_contig5406:10474..108191622930555.4761024-CDS-H-paniculata_contig5406:10474..10819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5406 10475..10819 +
1691481346.2939477-CDS-H-paniculata_contig5406:10474..108191691481346.2939477-CDS-H-paniculata_contig5406:10474..10819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5406 10475..10819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5406.12847.1

>prot_H-paniculata_contig5406.12847.1 ID=prot_H-paniculata_contig5406.12847.1|Name=mRNA_H-paniculata_contig5406.12847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MASITDPNVTATSPSQRRVQLLLSMSPHTCPRCTINPANITVGLGRAQQQ
QLSSTVRWFICLLVVLLMLHHGSAEPRDDRDGQAPGWAAQRADWLPSLSR
FHNVLKTTLRCSAF*
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mRNA from alignment at H-paniculata_contig5406:9865..10819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5406.12847.1 ID=mRNA_H-paniculata_contig5406.12847.1|Name=mRNA_H-paniculata_contig5406.12847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=955bp|location=Sequence derived from alignment at H-paniculata_contig5406:9865..10819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTACACATCCTATTCACACTGCTCTGTCTTCACACTTGGAAACCGACA
TCTCCGACAAACAGCAATATCCGCGCCCCCGTCCTAATTAGAAGCACAAA
CAGGGCCAATTTGTAGGAGCTACGCAATGCTCAAGGTGAAATTGTACTTT
GCTTATGTATGTACACTTGTGCTCAACAAAATCCCCCATCTCGGAGTTGT
GCTCCAAATGAGAAGTGGAAATGTACAGGAGTTTTCTTTCTACAAGTTAA
AATACTGTAATTATACACAACAAGTTAAAAGGTCGCATGTCAATGTGGCT
GTTGAGGCCAACTGACCTGCTCATCTGAACGTTGAGTGGACGTCTCAGCT
CTGGGCGTAATCCTCATTACAGGGCGAACCTCGAAGAAGAATGTCAATGT
GAATGCCTCCACTGTGAGAACCGCAAAGCTCAGACTCGTTATCATAACTA
CCCCCCCACGCTTGCTGTCTGTGTTGCGCTTTTCATCATCTCTGCCACAG
TCTCGCTCCCGCAGCAGGTGCACTGAGCGATAAGACCCGAAAAGGCTTCA
GGTTTTCAGCAGCATAGCAGGCTCAAAGACAACTGACACACCCTTTGAGG
AAGGAACTTGATGGCGTCAATCACTGACCCTAACGTCACTGCGACATCAC
CTTCACAACGACGAGTGCAATTGCTGCTATCAATGTCACCCCATACTTGT
CCAAGATGCACCATAAACCCTGCTAACATCACGGTGGGTCTTGGGCGCGC
CCAGCAGCAGCAGCTGTCGTCAACTGTGCGCTGGTTCATTTGCTTACTGG
TCGTGTTGTTGATGCTGCATCATGGGTCGGCGGAACCGCGGGATGACCGA
GACGGCCAAGCACCCGGCTGGGCCGCCCAACGTGCCGATTGGCTCCCGTC
ATTGTCGAGGTTTCACAACGTGCTCAAAACCACGCTCAGGTGCAGTGCGT
TTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5406:9865..10819+

>mRNA_H-paniculata_contig5406.12847.1 ID=mRNA_H-paniculata_contig5406.12847.1|Name=mRNA_H-paniculata_contig5406.12847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig5406:9865..10819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTCAATCACTGACCCTAACGTCACTGCGACATCACCTTCACAACG
ACGAGTGCAATTGCTGCTATCAATGTCACCCCATACTTGTCCAAGATGCA
CCATAAACCCTGCTAACATCACGGTGGGTCTTGGGCGCGCCCAGCAGCAG
CAGCTGTCGTCAACTGTGCGCTGGTTCATTTGCTTACTGGTCGTGTTGTT
GATGCTGCATCATGGGTCGGCGGAACCGCGGGATGACCGAGACGGCCAAG
CACCCGGCTGGGCCGCCCAACGTGCCGATTGGCTCCCGTCATTGTCGAGG
TTTCACAACGTGCTCAAAACCACGCTCAGGTGCAGTGCGTTTTGAATGGC
GTCAATCACTGACCCTAACGTCACTGCGACATCACCTTCACAACGACGAG
TGCAATTGCTGCTATCAATGTCACCCCATACTTGTCCAAGATGCACCATA
AACCCTGCTAACATCACGGTGGGTCTTGGGCGCGCCCAGCAGCAGCAGCT
GTCGTCAACTGTGCGCTGGTTCATTTGCTTACTGGTCGTGTTGTTGATGC
TGCATCATGGGTCGGCGGAACCGCGGGATGACCGAGACGGCCAAGCACCC
GGCTGGGCCGCCCAACGTGCCGATTGGCTCCCGTCATTGTCGAGGTTTCA
CAACGTGCTCAAAACCACGCTCAGGTGCAGTGCGTTTTGA
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