mRNA_H-paniculata_contig5405.12845.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5405.12845.1 vs. uniprot
Match: A0A6H5L805_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L805_9PHAE) HSP 1 Score: 464 bits (1195), Expect = 4.880e-151 Identity = 334/775 (43.10%), Postives = 386/775 (49.81%), Query Frame = 1
Query: 1 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPEVATNIAFVAVSAFGASLLVFHVCQDFSVRGYWAILQAPKYLVNAIFVHLVARGLRWHIDRMLGRSFLQEDEALPDFLGGTRWGGDG----------------------------------------------DGDRSNSDRG-LDRSR-GIDGVAGIG----------------------------------------NSLHRTSKSAENVNLVPSDTRASQEGDGGQGGERENPLLAAGAAAAASAVADGPNADMRVLLDDVHPSDRSRKNSNDHHLETSSQKGNDKQRAHGRRNGQDRGGGPGFPDLFAACRPHSHS---------NSPDPSPIRTTEPPSSDPSRRHRHRCLPFGNTGDSVG--------PGGAPIRAVRNGGERREADEEGRGGSVEG--KSVGSVSDDGGAGGHGAGSRGSRRRFQALTL---------------NTTAGTKDGEWQRVRRQRRGEGGVGQKEEKRGASLVGRTKTTGGDRGHRLEGISMATTLTKRP------PPKSGGSWRSIDTISRALHVGSSSRRHAQRLVGGDRAS----EHHQLNFFTESDLDDLLHSTFFIKMCDDASWLYVEDHPHQPEWNWLLPLWGGYRIAPKFQGEVKKHEAHRMLFQCETGRHKDHVRIRSRATNTFLFFLGVKQPLTWVAWDRDVVGGDWEDVKLEWVGKPTGPDGVLMGDERGRVIIRSRPMNGYVSWNGSRFSHVPSREGAAVFTFQRMAPS 1929
MALVDTQGFVMAVDRSLFGPQGRRWIERKLP VATN+AFVAVSAFGA LLVFH+ +++ GYWAILQ PK+++NA+ +HLVAR LRWHIDRMLG +F DEALPDF G T G+G G R + + +D+ + G G +SL R++ S +P R E G + R + L DG L D SD+ R + L+ + G R FPDLF ACRP H +SP SP T E S+ PS R+R S P A R V GG E+ R +G + G SDDGGA A G V E G G EEK G G KT+ + + R S WRSID +SRAL S+RR R G R ++NFFTE DLD+LLHSTFFIKMCDDASWLYVEDHP QPE NWLL LWGGY+IAP+FQGEVK++EAHRMLFQ E GRH+DHVRIRSRATNTFLFFLG+KQPLTWVAWDRDVVGG+WED+KLEWVGKP GPDGVL+GDERGRV+IRSRPM GYVSWNGSRF+HVP REGA VF QRMAPS
Sbjct: 1 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPNVATNLAFVAVSAFGACLLVFHITREYYTSGYWAILQTPKHILNAVVLHLVARALRWHIDRMLGVNFAAGDEALPDFFGSTTLDGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTPPQPKQGRRDSVEESTIDQEQFGWSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLGRSASSLS----LPESARPGWE-QGRRSWRRSSNRL------------DGSG-----LADGFAGSDKERGENAAGALDDXXXXXXXXNHSRGDREKHT------FPDLFGACRPSHHERHRRRERSLSSPPSSPSATLE--STRPSSVGRNRXXXXXXXXPSPRRRRLSLEVPRTAADRWVDEGGNYGAGKEQRRAAGADGAARQSGCASDDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPQVGASAAAGAAGEV------EAGKGDVEEKEGGGRNG-AKTSVAXXXXXXXXXXTGLSGSWRDGXXXXXXXXSNSRWRSIDKLSRAL---GSTRRRTSRQGGAARGEGGEGSEQKMNFFTEKDLDELLHSTFFIKMCDDASWLYVEDHPFQPELNWLLSLWGGYKIAPRFQGEVKQNEAHRMLFQAENGRHRDHVRIRSRATNTFLFFLGIKQPLTWVAWDRDVVGGEWEDLKLEWVGKPQGPDGVLVGDERGRVVIRSRPMKGYVSWNGSRFTHVPGREGATVFMLQRMAPS 735
BLAST of mRNA_H-paniculata_contig5405.12845.1 vs. uniprot
Match: D8LSC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC8_ECTSI) HSP 1 Score: 212 bits (540), Expect = 4.630e-58 Identity = 103/142 (72.54%), Postives = 114/142 (80.28%), Query Frame = 1
Query: 1291 WRSIDTISRALHVGSSSRRHAQRLVGGDRAS----EHHQLNFFTESDLDDLLHSTFFIKMCDDASWLYVEDHPHQPEWNWLLPLWGGYRIAPKFQGEVKKHEAHRMLFQCETGRHKDHVRIRSRATNTFLFFLGVKQPLTWV 1704
WRSID +SRAL S+RR R G R ++NFFTE DLD+LLHSTFFIKMCDDASWLYVEDHP QPE NWLL LWGGY+IAP+FQGEVK++EAHRMLFQ E GRH+ HVRIRSRATNTFLFFLG+KQPLTWV
Sbjct: 321 WRSIDKLSRAL---GSTRRRTSRQGGAARGEGGEGSEQKMNFFTEKDLDELLHSTFFIKMCDDASWLYVEDHPFQPELNWLLSLWGGYKIAPRFQGEVKQNEAHRMLFQAENGRHRGHVRIRSRATNTFLFFLGIKQPLTWV 459
BLAST of mRNA_H-paniculata_contig5405.12845.1 vs. uniprot
Match: A0A835ZHV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV2_9STRA) HSP 1 Score: 194 bits (492), Expect = 7.880e-51 Identity = 187/650 (28.77%), Postives = 277/650 (42.62%), Query Frame = 1
Query: 1 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPEVATNIAFVAVSAFGASLLVFHVCQDFSVRGYWAILQA-PKYLVNAIFVHLVARGLRWHIDRMLGRSFLQEDEALPDFLGGTRWGGDGDGDRSNSDRGLDRSRGIDGVAGIGNSLHRTSKSAENVNLVPSDTRASQEGDGGQGGERENPLLAAGAAAAASAVADGPNADMRVLLDDVHPSDRSRKNSNDHHLETSSQKGNDKQRA--HGRRNGQDRGGGPGFPDLFAACRPHSHSNSPDPSPIRTTEPPSSDPSRRHRHRCLPFGNTGDSVGPGGAPIRAVRNGGERREADEEGRGGSVEGKSVGSVSDDGGAGGHGAGSRGSRRRFQALTLNTTAGTKDGEWQRVRRQRRGEGGVGQKEEKRGASLVGRTKTTGGDRGHRLEGISMATTLTKRPPPKSGGSWRSIDTISRALHVGSSSRRHAQRLVGGDRASEHHQLNF----FTESDLDDLLHSTFFIKMCDDASWLYVEDHPHQPE----WNWLLPLWG-GYRIAPKFQGEVKKHEAHRMLFQCETGRHKDHVRIRSRATNTFLFFLGVKQPLTWVAWDRDVVGGDWEDVKLEWVGKPTGPDGVLMGDERGRVIIRSRPMNGYVSWNGSRFSHVPSREGAAVFTFQ 1914
MALVD +AVDRSLFGPQGRRWIERKLPEV +N+ F+ VS FGA LL+F +C D+ G+ L PK++ A VHL+A+ LRWHI +++ SF+ +D P+ + TRW + A + + + + + G+G R P + + D P R RS S D T+++ D RA + R++ P P A S++ +P+P+ +T S +++ R G +P+R + G R A+ GGA + A + G+ LV T+ G + + P P S T++ A RR +R G +R L+ FT + +L+ S FF+++ DD SW+YVE +QP+ W + L+ GY++ ++ G+V H+A+RMLFQCE GR HV +RSR TNT LF LG+++P T VAWDR+V GGDWED+++EW + G V+I + GY+ W G RF HV R+ A+ F Q
Sbjct: 1 MALVDINPLTVAVDRSLFGPQGRRWIERKLPEVTSNMTFIMVSGFGACLLMFGICTDYQRFGFVGGLGCLPKHIAAATLVHLLAKLLRWHITQVVQGSFMPDDR--PNLV--TRWA-------------------VAAAAATRDYARQHTPAGGGXXXXXXXXEGATTRITGRGSARAPPA-STNSLTIIHGTYDSPYRRTRQ---------RSGSASTDADAPTTAE---DAPRAFIYSRKSKIVDASAP--PQPLTAALDESYT---EPAPLDSTRDGGSTSAQQRRG--------------GLSPLRGEQGGETPRSAE-------------------GGA------------------FDEPAAVRPGD------------------------LV--TEVVSEAPGAPQAALDPQAEHHRAPKPPVADS----PTLATA-------RRRRRRHGGIERGRSEGGLDLQPYLFTRATAHELMDSLFFMRVVDDDSWVYVEHDLYQPQEGAGLGWAMNLFHRGYKVGVRYAGDVDPHDANRMLFQCEPGRASGHVWLRSRGTNTLLFMLGLRKPRTLVAWDREVPGGDWEDMRIEWC-----------PEHNGHVVISCKRAGGYLQWTGDRFGHVDERDCASRFMLQ 510
BLAST of mRNA_H-paniculata_contig5405.12845.1 vs. uniprot
Match: A0A835YVS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS8_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.060e-38 Identity = 76/178 (42.70%), Postives = 114/178 (64.04%), Query Frame = 1
Query: 1405 FTESDLDDLLHSTFFIKMCDD-ASWLYVEDHPHQPE----WNWLLPLWG-GYRIAPKFQGEVKKHEAHRMLFQCETGRHKDHVRIRSRATNTFLFFLGVKQPLTWVAWDRDVVGGDWEDVKLEWVGKPTGPDGVLMGDERGRVIIRSRPMNGYVSWNGSRFSHVPSREGAAVFTFQRM 1920
FT +LL S FFIK+ D+ +W++VED H+ W + L+ GYR+ ++ G+V H+AHR++FQCE GR HVRIRSR +NT+LF LG+++PLT VAWDR+V GGDWED+++ W+ + ++ GRV+IR + GY+ W G++F H P ++ A+ F Q +
Sbjct: 432 FTAETAHELLDSMFFIKLVDEEGAWMFVEDDLHESREGGGLGWAMSLFHRGYRVGARYAGDVGPHDAHRLVFQCEPGRAAGHVRIRSRGSNTYLFMLGLRRPLTLVAWDREVAGGDWEDMRIVWLPR---------AEDEGRVLIRCKTAGGYLQWTGTKFVHTPVKDSASRFMLQSL 600
BLAST of mRNA_H-paniculata_contig5405.12845.1 vs. uniprot
Match: D8LSC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC9_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 2.050e-12 Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 139 ASLLVFHVCQDFSVRGYWAILQAPKYLVNAIFVHLVARGLRWHIDRMLGRSFLQEDEAL 315
+S+ + +++ GYWAILQ PK+++NA+ +HLVAR LRWHIDRMLG +F DE +
Sbjct: 2 SSIASSQITREYYKSGYWAILQTPKHILNAVVLHLVARALRWHIDRMLGVNFAAGDEGM 60 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5405.12845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5405.12845.1 >prot_H-paniculata_contig5405.12845.1 ID=prot_H-paniculata_contig5405.12845.1|Name=mRNA_H-paniculata_contig5405.12845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=653bp MALVDTQGFVMAVDRSLFGPQGRRWIERKLPEVATNIAFVAVSAFGASLLback to top mRNA from alignment at H-paniculata_contig5405:7377..11665+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5405.12845.1 ID=mRNA_H-paniculata_contig5405.12845.1|Name=mRNA_H-paniculata_contig5405.12845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4289bp|location=Sequence derived from alignment at H-paniculata_contig5405:7377..11665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5405:7377..11665+ >mRNA_H-paniculata_contig5405.12845.1 ID=mRNA_H-paniculata_contig5405.12845.1|Name=mRNA_H-paniculata_contig5405.12845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3918bp|location=Sequence derived from alignment at H-paniculata_contig5405:7377..11665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |