mRNA_H-paniculata_contig5404.12843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5404.12843.1
Unique NamemRNA_H-paniculata_contig5404.12843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A836CG63_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG63_9STRA)

HSP 1 Score: 596 bits (1536), Expect = 1.240e-199
Identity = 297/427 (69.56%), Postives = 360/427 (84.31%), Query Frame = 3
Query: 2142 QGYAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMMM 3422
            + YA+KTIKKS+VSRIESL+REIEILR V HP II L  VYED+R+IHLVTELC GGELFDRII+KTES EG YSE+DA  +V +ILSGI YCH +HNICHRDLKPENFLFKR D DT+IKIIDFGLSRFE+  SAMTTRVGTPYYIAPEVL R YDKACDLWSIGVITYILL+GYPPFYG++D EIFASVR+G FDFPSPEWD++S++AKDFI  LL+ DP  R+TA Q++ H WF + + + AD+ A A    + ++  V++QRIN+RLRRFVGM KLKKVALNVIAQQLTE +IGHLR+VFE LDADG GVIS  EL+++V +EGL   +D+V  LL+G+DIDGSN+L+YREFLAATM+R++F+REEN+R  F YFDL+   +IT+ NL+KIFG+EEHAREIM DV+I+ +GVI Y+EF+ MM+
Sbjct:   63 EAYAVKTIKKSRVSRIESLKREIEILRRVRHPNIIALVAVYEDDRYIHLVTELCTGGELFDRIIKKTESAEGRYSERDAARIVRNILSGIAYCHTQHNICHRDLKPENFLFKRADDDTQIKIIDFGLSRFEEANSAMTTRVGTPYYIAPEVLLRSYDKACDLWSIGVITYILLSGYPPFYGDTDAEIFASVRRGEFDFPSPEWDSVSADAKDFICSLLRMDPTERLTAPQALDHPWFEKAE-EAADSAAPAPSLEEALS-DVTLQRINYRLRRFVGMGKLKKVALNVIAQQLTEAQIGHLRDVFEALDADGNGVISVEELKKIVIEEGL---EDEVAYLLRGVDIDGSNTLDYREFLAATMDRSVFVREENMRSGFAYFDLEGAGKITVDNLIKIFGSEEHAREIMGDVDINSDGVIEYEEFRQMML 484          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A6H5JZZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ8_9PHAE)

HSP 1 Score: 571 bits (1471), Expect = 1.550e-189
Identity = 321/498 (64.46%), Postives = 345/498 (69.28%), Query Frame = 3
Query: 2190 ESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKV-------------------------------------------------------------------------------VVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWF---ARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGL--DNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSE--ITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMMME 3425
            ESLRREIEILRCV+HPCIIKLYDVYED+RFIHLVTELC GGELFDRIIQKTESEEGHYSEKDAKV                                                                               VVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIK             +AMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVR GYFDFPSPEWDNIS+EAKDFI QLLQKDPAARM+ATQSI H WF   + G   +A A A   +   + N QV++QRINHRLRRFV MSKLKKVALNVIAQQLTE EIGHLR VFE LD   KGVI  +EL+QVVQQ+G+  +N Q+DV++LLQGIDIDGSNSLNYREFLAATME                    + +   ITL NLVKIFGAEEHAREIM DVN+SGEG INYDEFK+MMM+
Sbjct:   14 ESLRREIEILRCVNHPCIIKLYDVYEDDRFIHLVTELCTGGELFDRIIQKTESEEGHYSEKDAKVGGKFLFLWEFVVVGWGRCRLTLTFCLQTLEALRLALGTTLGSPALRAACVDSSCEDCEATNERSPPDPPAAALFGASKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIK-------------TAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDNISTEAKDFITQLLQKDPAARMSATQSINHGWFESHSGGALANAVAAAGGGDSSVQGNEQVNLQRINHRLRRFVRMSKLKKVALNVIAQQLTEAEIGHLRGVFELLDTQNKGVIGPDELQQVVQQDGMVVENAQEDVMQLLQGIDIDGSNSLNYREFLAATMEARTSSSGSRTSAVLSTTSTSTVTRRCITLQNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMD 498          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A835ZG53_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG53_9STRA)

HSP 1 Score: 522 bits (1344), Expect = 4.170e-171
Identity = 259/424 (61.08%), Postives = 329/424 (77.59%), Query Frame = 3
Query: 2148 YAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMM 3419
            YAIKTIKK KV R+E L+REIEILR VDHP IIKL DVYED   +HLVTELC GGELFDRII KTES+EGHY E+DA  +V  ILS IEY HNEHNICHRDLKPENFLFK    D+++KIIDFGLSRFED  + MTTRVGTPYYIAPEVL +KYD ACDLWSIGVITYILL GYPPFYG++D EIF ++++G F F SPEWD+IS EAKD I +LL+KD   R+TA+Q++ H WF +      D   TA       N++V+MQ +NHRL+RFVG + +KK+ALN+IA  L E ++GHL ++F  +D DG GVI+T EL++VV  EGL NLQ +V+ LL+GID+DGS +L++REFLAA+M+R IF+RE N+R AF++FD      +++ +L++ FG++E A +I+ DV+I  +GVI ++EF+ MM
Sbjct:   70 YAIKTIKKGKVGRLELLKREIEILRTVDHPSIIKLVDVYEDANHLHLVTELCTGGELFDRIIAKTESDEGHYCERDAAGIVHKILSAIEYIHNEHNICHRDLKPENFLFKSAADDSDLKIIDFGLSRFEDQATHMTTRVGTPYYIAPEVLEKKYDSACDLWSIGVITYILLCGYPPFYGDNDVEIFKAIQRGTFRFLSPEWDSISVEAKDLIQRLLEKDCRRRLTASQALVHPWFEKV----MDTATTA------ANLRVNMQHMNHRLKRFVGANNMKKLALNIIASNLAEEDVGHLHKIFHSIDIDGNGVITTEELQRVVAAEGLINLQAEVISLLEGIDMDGSKTLDWREFLAASMDRAIFLRECNMRKAFEHFDHQRKGHVSMEDLLRCFGSQEEALKILGDVDIDKDGVITFEEFQIMM 483          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A6H5L236_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L236_9PHAE)

HSP 1 Score: 520 bits (1338), Expect = 1.420e-169
Identity = 255/440 (57.95%), Postives = 335/440 (76.14%), Query Frame = 3
Query: 2142 QGYAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEP--------------RDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMM 3419
            Q +AIKTI+K++VSR+ESL RE++ILR V HP II+L DVYEDE  +HLVTELC GGELFDRI++KTESEEG YSE+DA  +V  ILS I YCH+EHNICHRDLKPENFLFK    D+E+KIIDFGLSRFE+    MTTRVGTPYYIAPEVL R Y+KACDLWSIGVI YILL GYPPFYG +D++IFASV +G +DFP PEWD +S +AK F+ +LL  DPA R TA++++   W    D + A++     EP                   M   +Q ++ RLRRF GMS LK+ ALNVIA QLTE +IGHLR+ F  +DAD  G I  +EL+ VV++EGL+ ++++V+ +L+G+D+DG++S+ ++EFLAAT++RN+FIRE+N+R AF +FD++ +  ITL+NLV IFG+E+HAREI+ D+++ G+G I++DEF+ MM
Sbjct:   60 QQFAIKTIRKARVSRVESLLREVQILRKVSHPNIIELVDVYEDEMNLHLVTELCTGGELFDRILEKTESEEGRYSERDAMTLVTKILSAIAYCHDEHNICHRDLKPENFLFKDKADDSELKIIDFGLSRFEETNQIMTTRVGTPYYIAPEVLGRSYNKACDLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASEALTLPWLHVLDDEAAESATVEGEPGVATTXXXXXXXXXXVAARMDKPLQ-VSSRLRRFTGMSNLKRAALNVIANQLTEADIGHLRDAFREIDADNNGSICVDELKMVVKKEGLEYIEEEVMTMLRGVDLDGNDSIEWKEFLAATIDRNVFIREDNVRRAFQHFDIEGSGSITLANLVSIFGSEDHAREIVGDIDLDGDGEISFDEFRQMM 498          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A6V1S6L4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S6L4_HETAK)

HSP 1 Score: 508 bits (1309), Expect = 1.040e-165
Identity = 258/428 (60.28%), Postives = 327/428 (76.40%), Query Frame = 3
Query: 2148 YAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDM--QSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMMME 3425
            +AIKTI+K+KV+RIESLRREIEI++ +DHP IIKLYDV+EDE+++HL+T+LC GGELFDRII+KT+SEEGHYSE+DA  +V +IL  I YCHN H ICHRDLKPENFLF+ PD +  +KIIDFGLSR EDM  Q  MTTRVGTPYYIAPEVL R Y KACDLWSIGVI YILL GYPPFYG++D EIF+SV++  F FPSPEWD IS EAK+ I QLL K P  R TA Q++A  WF + D D A         R  I +   M+    RL++FVGM+KLK+ ALN+IA QLTE EIGHLR+VF  +D DG GVI+  EL   ++ EG++ ++ +V+ L+QGID+DG+ SL+Y+EFLAA ++RN+FIREENIR AF YFD      I  ++LV IFG+ +HA E +  ++++G+GVI Y+EFK M+ +
Sbjct:   84 FAIKTIRKAKVNRIESLRREIEIMQSIDHPSIIKLYDVFEDEKYLHLITQLCTGGELFDRIIEKTKSEEGHYSERDAANLVKAILDAIAYCHNLH-ICHRDLKPENFLFESPDDNAALKIIDFGLSRVEDMGKQGVMTTRVGTPYYIAPEVLGRHYTKACDLWSIGVIMYILLCGYPPFYGDNDTEIFSSVQRAQFYFPSPEWDAISEEAKNLIKQLLSKRPEDRPTAEQALADPWFEKVDDDPA--------LRAPIRIAAFMR---DRLKQFVGMNKLKRHALNIIANQLTEAEIGHLRKVFSAIDDDGNGVITLEELRMAMRMEGMEAMEAEVMGLMQGIDLDGNESLDYQEFLAAVVDRNVFIREENIRVAFQYFDKQGRGHIQPADLVDIFGSVQHAEEAVRGIDLNGDGVIEYEEFKQMIKD 499          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: W7T8G8_9STRA (Calcium-dependent protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T8G8_9STRA)

HSP 1 Score: 509 bits (1312), Expect = 3.230e-165
Identity = 246/426 (57.75%), Postives = 325/426 (76.29%), Query Frame = 3
Query: 2142 QGYAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMM 3419
            + +AIK+I+K+KVSR++SLRREI+IL+ VDHP IIKL DVYED++F+HLVTELC GGE+FDRII KT+S EGHYSEKDA V++  IL  I+YCH  HNICHRDLKPENFLFK  D   E+KIIDFGLSRFED Q  MTTRVGTPYYIAPEVL+R YDK+CDLWSIGVI YILL GYPPFYG++D +IFASVR+  F FPSPEWD+IS  AKD I +LL KDP  R +A  ++ H WF                 +D    Q   + + + LRRF+GM+KLK+VAL +IA+Q+ E ++ H+++ FE LD +  GVI+  EL+Q  +QEGL N+++ V RL+ G+D++ + +++Y EFLAATMER++++R+E+IR AF +FD D +  IT+ +LV+  G EE+ARE++ D++ +G+GVI+ DEFK+MM
Sbjct:  138 EAFAIKSIRKAKVSRLDSLRREIDILQAVDHPQIIKLVDVYEDDKFLHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAAVIMRKILDAIDYCHTVHNICHRDLKPENFLFKTEDPSAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRAEFTFPSPEWDDISPSAKDLIRKLLSKDPRKRPSAAAALNHEWF-------------QVLKKDGEITQALTEHLRNSLRRFIGMNKLKRVALTIIAEQVAEADVAHVQKAFEALDTNKDGVITVAELQQAAEQEGLTNVKEQVARLMHGVDVNENTAIDYNEFLAATMERSVYVRDEHIRRAFQHFDQDMDGHITVQDLVEALGTEENAREVLGDIDRNGDGVISLDEFKNMM 550          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: D8LJD5_ECTSI (Calcium-dependent protein kinase, isoform 2 (CDPK 2) Protein kinase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD5_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 8.730e-155
Identity = 249/438 (56.85%), Postives = 316/438 (72.15%), Query Frame = 3
Query: 2148 YAIKTIKKSK--------------VSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMM 3419
            +AIKTIKKSK              V R+  L+REIEILR VDHP +I+L DVYED+  +HLVTELC GGELFDRII KTES+EGHYSE+DA  +V  I+  IEYCHNEHNICHRDLKPENFLFK  D   ++KIIDFGLSRFED   AMTTRVGTPYYIAPEVLS+KYDKACDLWSIGVI +ILL GYPPF+G +D EIF +V++  + F SPEWD++S +AKD I +LL KDP AR+TA+Q++ H WF +  + DA     A+  RD      S  R+NHRLRRF G + LKK+ALNVIA+ +   + GHLR+VF  LD +G G I+ +EL+QV+  EG+  +Q +V+ LL  +D      L+YR FLAATME+ IF+R EN+R AFD+FDL     I  S+L++  G+E+ AR ++ D+++  +G I++DEF  MM
Sbjct:   42 FAIKTIKKSKCQVACRIDWYPFRQVPRLVLLKREIEILRAVDHPTLIRLEDVYEDDVNLHLVTELCTGGELFDRIILKTESQEGHYSERDAANIVIKIIGAIEYCHNEHNICHRDLKPENFLFKTKDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLSKKYDKACDLWSIGVIMFILLCGYPPFHGANDAEIFKAVQRVDYRFLSPEWDSVSDDAKDLIRKLLVKDPTARLTASQALVHPWFEKVMSGDA----AAQTLRD------SALRLNHRLRRFAGANALKKIALNVIAEDVGGADEGHLRKVFNSLDLNGDGEITVDELQQVIASEGMVGMQAEVLELLNSMD----KKLDYRNFLAATMEKGIFLRRENLRKAFDHFDLQGTGSINKSDLMEALGSEDCARTMLEDIDMDHDGQISFDEFSEMM 465          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A812RCN9_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCN9_SYMMI)

HSP 1 Score: 462 bits (1190), Expect = 4.290e-149
Identity = 228/430 (53.02%), Postives = 318/430 (73.95%), Query Frame = 3
Query: 2112 RK*RTLQTKKQGYAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYD 3401
            RK +  QTK + +A+KTIKKSKV R+E+L+REIEIL+ +DHP IIKLYDV+ED++++HLVTELC GGELFDRII+KT+     +  KDA  ++ S+L+ IEYCH+ HNICHRDLKPENFLF  P +D+++KIIDFGLSR++D    M+T+VGTPYYIAPEVL+RKYDK CDLWSIGV+TY+LL GYPPFYG++D EIFASV++G FDFPSP+WD+IS++AK FI   L+ D + R TA +++ H WF  G                + ++  +M  I   L RF+ M+KLK+ AL VIA+QLTE E+  LR  F+ +D +  G ++  E++  ++++G D L+D++ +L++G+ ++ SN + Y EFLAATM+ N  IREENI  AF  FD D +  +T+  LV I G+EEHARE+  +++++G+GVI+Y+
Sbjct:   24 RKCQNRQTK-EYFAVKTIKKSKVGRLETLKREIEILKTMDHPNIIKLYDVFEDDKYLHLVTELCTGGELFDRIIEKTKM----HVLKDASQIIKSVLNAIEYCHHVHNICHRDLKPENFLFATPAADSQLKIIDFGLSRYDDEIEHMSTKVGTPYYIAPEVLTRKYDKECDLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTAREALEHPWFTAG---------------TQHSVPHTMHSIKGSLERFINMNKLKRAALQVIAEQLTETELHGLRATFDAMDLNRDGKLTYTEIQTALEEQGFDMLKDELRQLMEGLGVESSNEIQYSEFLAATMDMNHAIREENILRAFQQFDTDGSGSLTIPELVAIMGSEEHAREVAGEIDLNGDGVISYE 433          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A7S1B6U7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6U7_9STRA)

HSP 1 Score: 457 bits (1176), Expect = 3.720e-144
Identity = 226/429 (52.68%), Postives = 312/429 (72.73%), Query Frame = 3
Query: 2139 KQGYAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSA-MTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDN-LQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMM 3419
            K+ +AIK+I+KSKV +IE L+REI IL+ ++HP IIKL++V+ED +++HL+TELC GGELFDRII KTE+EEGH+SE+DA  +V SIL  IEYCH+E NICHRDLKPENFLF   + ++ IKIIDFGLSR E  +S  M T+VGTPYY+APEVL R+Y K+CD+WSIGVITYILL GYPPFYG+SD +IF SVR G FDFPSP+WD+IS+EAKDFI  LL+K+PA R+TA +++ H WF R D   +  T   +  +     Q            F+GM+KLKK AL  IA  LTE E+G L E+   +D DG G ++  EL+  +      + +  +++ + + +++ G N L+++EFLA+T E+N+  RE+ IR AFDYFD    + IT ++++++FG+E+ A+E+M D+++ G+GVI+Y EF SMM
Sbjct:  209 KEWFAIKSIRKSKVGKIELLKREIAILKEMNHPNIIKLHEVHEDTKYLHLITELCTGGELFDRIIAKTETEEGHFSERDAAKIVHSILKAIEYCHDEKNICHRDLKPENFLFYTAEENSHIKIIDFGLSRNELPESGIMQTKVGTPYYVAPEVLRREYTKSCDIWSIGVITYILLCGYPPFYGDSDAQIFKSVRAGVFDFPSPDWDDISAEAKDFICALLRKNPAERLTANRALRHPWFKRTDKKKSHPTINFDNSKSVSYKQ------------FMGMNKLKKAALAFIAMNLTEGEVGALTEILHEIDRDGNGKLTLEELDSALSSGNFGSGISAELIAMREALNVSGGNCLDWKEFLASTAEKNLLYREDKIRAAFDYFDQARTNTITRNDMIRVFGSEKQAQEVMGDIDLDGDGVISYKEFSSMM 625          
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Match: A0A7S2VWQ7_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWQ7_9STRA)

HSP 1 Score: 445 bits (1144), Expect = 3.720e-141
Identity = 218/429 (50.82%), Postives = 312/429 (72.73%), Query Frame = 3
Query: 2142 QGYAIKTIKKSKVSRIESLRREIEILRCVDHPCIIKLYDVYEDERFIHLVTELCKGGELFDRIIQKTESEEGHYSEKDAKVVVASILSGIEYCHNEHNICHRDLKPENFLFKRPDSDTEIKIIDFGLSRFEDMQSA--MTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSIAHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKKVALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLD-NLQDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLDSNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMM 3419
            Q +AIK+I+K KV +I+ L+REIEIL+ V HP II L++VYEDE+++HLVTELC GGELFDRII KT+S+EGH+SE DA  ++  I+  I YCH+  +ICHRDLKPENFLF+ PD  ++IKIIDFGLSR ED      M T+VGTPYY+APEVL+++YDK+CD+WSIGVITYILL GYPPFYG++D EIFASVR   +D+PSPEWD+IS++AKDFI  LL+KDP AR+TA+ ++ H WF       +D     ++   KI    S   +N   ++++ MSKLKK AL  IA  LT  E+  L+++F+ +D D  G ++  E++  +   G   N+  ++  +++ +D++  + LN++EF+ AT++++  I+E+ IR A+++FD +    IT+ +L  +FG+E+ AREIM DV+I+G+GVI+Y+EF  MM
Sbjct:   89 QWFAIKSIRKKKVGKIDVLKREIEILKEVTHPNIINLHEVYEDEKYLHLVTELCTGGELFDRIIAKTQSKEGHFSEHDAAEIIKEIIEAIAYCHDIKHICHRDLKPENFLFETPDEHSKIKIIDFGLSRHEDTSPTHMMKTKVGTPYYVAPEVLNKEYDKSCDMWSIGVITYILLCGYPPFYGDNDHEIFASVRAAQYDYPSPEWDDISAKAKDFIDHLLKKDPKARLTASNALDHSWF-------SDLGVVDKKTLPKIKHGGS---VNTEFKKYMAMSKLKKAALAHIATHLTTEEVKGLKDIFQAIDVDHSGTLTVEEIKGALASGGFSKNINLELEAIIENLDVEHHHELNWKEFVTATIDKSTIIQEDKIRMAYNHFDRNKRGSITVKDLANVFGSEQQAREIMKDVDINGDGVISYEEFHEMM 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5404.12843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG63_9STRA1.240e-19969.56Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
A0A6H5JZZ8_9PHAE1.550e-18964.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG53_9STRA4.170e-17161.08Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
A0A6H5L236_9PHAE1.420e-16957.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1S6L4_HETAK1.040e-16560.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T8G8_9STRA3.230e-16557.75Calcium-dependent protein n=3 Tax=Monodopsidaceae ... [more]
D8LJD5_ECTSI8.730e-15556.85Calcium-dependent protein kinase, isoform 2 (CDPK ... [more]
A0A812RCN9_SYMMI4.290e-14953.02Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A7S1B6U7_9STRA3.720e-14452.68Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2VWQ7_9STRA3.720e-14150.82Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5404contigH-paniculata_contig5404:498..9160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.9
Seed ortholog evalue2.7e-75
Seed eggNOG ortholog4792.ETI36224
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.Lipopolysaccharide kinase (Kdo/WaaP) family
EggNOG OGs3Q7TU@4776,KOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons7
Model size3427
Cds size888
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5404.12843.1prot_H-paniculata_contig5404.12843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5404 4898..9160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930554.837517-UTR-H-paniculata_contig5404:497..28781622930554.837517-UTR-H-paniculata_contig5404:497..2878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5404 498..2878 +
1691481346.064558-UTR-H-paniculata_contig5404:497..28781691481346.064558-UTR-H-paniculata_contig5404:497..2878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5404 498..2878 +
1622930555.0483959-UTR-H-paniculata_contig5404:3666..37891622930555.0483959-UTR-H-paniculata_contig5404:3666..3789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5404 3667..3789 +
1691481346.0809479-UTR-H-paniculata_contig5404:3666..37891691481346.0809479-UTR-H-paniculata_contig5404:3666..3789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5404 3667..3789 +
1622930555.0622602-UTR-H-paniculata_contig5404:4864..48971622930555.0622602-UTR-H-paniculata_contig5404:4864..4897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5404 4865..4897 +
1691481346.0904553-UTR-H-paniculata_contig5404:4864..48971691481346.0904553-UTR-H-paniculata_contig5404:4864..4897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5404 4865..4897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930555.0769114-CDS-H-paniculata_contig5404:4897..50251622930555.0769114-CDS-H-paniculata_contig5404:4897..5025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 4898..5025 +
1691481346.09965-CDS-H-paniculata_contig5404:4897..50251691481346.09965-CDS-H-paniculata_contig5404:4897..5025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 4898..5025 +
1622930555.0931778-CDS-H-paniculata_contig5404:6131..63901622930555.0931778-CDS-H-paniculata_contig5404:6131..6390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 6132..6390 +
1691481346.1104355-CDS-H-paniculata_contig5404:6131..63901691481346.1104355-CDS-H-paniculata_contig5404:6131..6390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 6132..6390 +
1622930555.1098926-CDS-H-paniculata_contig5404:7536..76591622930555.1098926-CDS-H-paniculata_contig5404:7536..7659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 7537..7659 +
1691481346.1237586-CDS-H-paniculata_contig5404:7536..76591691481346.1237586-CDS-H-paniculata_contig5404:7536..7659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 7537..7659 +
1622930555.1221495-CDS-H-paniculata_contig5404:7997..82491622930555.1221495-CDS-H-paniculata_contig5404:7997..8249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 7998..8249 +
1691481346.1343884-CDS-H-paniculata_contig5404:7997..82491691481346.1343884-CDS-H-paniculata_contig5404:7997..8249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 7998..8249 +
1622930555.1366017-CDS-H-paniculata_contig5404:9034..91601622930555.1366017-CDS-H-paniculata_contig5404:9034..9160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 9035..9160 +
1691481346.1426003-CDS-H-paniculata_contig5404:9034..91601691481346.1426003-CDS-H-paniculata_contig5404:9034..9160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5404 9035..9160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5404.12843.1

>prot_H-paniculata_contig5404.12843.1 ID=prot_H-paniculata_contig5404.12843.1|Name=mRNA_H-paniculata_contig5404.12843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=296bp
MQSAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGE
SDQEIFASVRQGYFDFPSPEWDNISSEAKDFIMQLLQKDPAARMTATQSI
AHRWFARGDADDADATATAEEPRDKINMQVSMQRINHRLRRFVGMSKLKK
VALNVIAQQLTEVEIGHLREVFERLDADGKGVISTNELEQVVQQEGLDNL
QDDVVRLLQGIDIDGSNSLNYREFLAATMERNIFIREENIRCAFDYFDLD
SNSEITLSNLVKIFGAEEHAREIMNDVNISGEGVINYDEFKSMMME
back to top

mRNA from alignment at H-paniculata_contig5404:498..9160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5404.12843.1 ID=mRNA_H-paniculata_contig5404.12843.1|Name=mRNA_H-paniculata_contig5404.12843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8663bp|location=Sequence derived from alignment at H-paniculata_contig5404:498..9160+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCAAACTACCACCCAAGCACTATCCGTGAAAAGAGTCAAGTAAATCAA AAACCTTGGAGTGGTATTTTACTGACGCATCCATATTTCTCTAGCGAGAA GATTTCTGTCGCTCCCACCTAAGCTACACTTTTTTTTAATTATTATTATT AGTGTGTGGGCTAAACGTCGATGCAGTTCTCTCCAAAAATTGAGTAATGT GGTGAAATATTGTTGGTACCTCCTCTAGCCCTTTTCATACATACTTATGC GAATTTGGGTTTCTGAATTTCCGTCTTGACGAGAAAATGCAGGTGGTAAA AGAACCGAAATTCGAGAATCCGACAAATTGGGAAAATCCGGAAACAACCT TCCCCCCTTGAACAGAGCTTTTTAATTATTTCAAAGTTTACTGTTGCCTA TAGGTAACTGCGAAATCGCGCTACCTGCGTTGGGAAGTTTGGGCTCCTGA GTCAAGAGAACTCAGTCTTTCGGCACAGATGGTTGATGCCCCCCCGAAAC ATGAGTTGACCTAAAATGAGGGCAATGAGGATGATTCAATGGTGTGGGTT GCTCATCCACAAATTGACCAGCCTGAGGGTGGGGAATATCACGAGTATCC CGTAGCAAGTGGGAGGTATATGACTAGGAGGAAGGTTTCACCCTCCGGAC AAATGCGAATATAAGACAGGAATGAATATGAGAAATCTGGAATTAATTCT GTATCTGTTTGAGTTGGACGGGAGATGTTCATATGATGCGAATAAGATAC GGTGTACTCGATATACCATGGAGCATCGAAAAGTTCGGGCAGACAAGAGT GTTCAATCTGTAAAGTGCCATCCGCAAAATGAGCAAGATCTGCATGTGTG ACTGTTGGCCGGGTATACGACCACCTGGTGACCGTGCGGAGAATGACCAT CCGTAAGACTTGTAAACGAATAAATACGTGTTTACCCACGAAAAATAATA ATAGTTCGAGATGGCTGTAAAAGCTCTACTCGTACTTGTCCAGGGGGTGT AAGTTTTCGCGGAGTCAAGTTTTCCGTCCAGCCTGCCTTTACGAGGGAAG ATGAGATGTAAATTGAACTGAAAGGGTGGTGAAACGTGTTTCAAGATAAT ACATGAGAGTAGAGTCGATACAGCATAGGATATACATTACATACGGTGTA GCACGATCGCTAGTATCCCCGCTTTCATATATGCATGTGAGCTCTAAAAA CCCTCAACTCCGGATATATACTTGTGGAGTACTATTCGTGGGAATGAGTC CTGTCCCGTGTATGTCATTGCACTATTATCCATATCGCGATAGTGACCGC CGGTCTGCAGCATCCTGACCAGGCAATCTGTAGTGCATGATTCCCCGGAC TCCCTACCAGCTGCTGACAGTGGCACACTTACATGTCTCTCATGTAAAAC GTTCGGAAACATTCAGATCGGTTATGGACTTGTGCGATCTAGAGCCGTGC GGGGTTTATTGATTATTCCCGGTGATGACGAAAATTCAAGAAAAGTCGTT TCAAGCATCTCGAAAACTGACAAATGCACAGCACCCTTTAGGGTGAGTGC CGAGAAAAGCGCCGTAAGTCCCGACGTATCGCACTGCCCGGGTGCGAACG TTGTCCAAAGGTGATGGACATTGTCGAGAACGGGGACAGCATGCGGCGGC CGAAAGAGTCCGTCAATAGATGGGTCTTCGCAAGATCTTTCCAACGGCAC ATTCTTCTTGTCAGCAGCGGCGTAGTTATCGGGAACGAGAATCGTCCTTC CCCGTCGTCACCTGGTCATTTCGCCGCTGATGAGTACGAAACTCGAAGTT TCTGCAAAATTTCCCAGCAGATAGATTTTTAATTGAAGTATATGCTCAAT ATTAGCGCTTGATTTGTGTCGACATAAGCTCTTGGTGTCAGTCCCCTTGC CCTAGTTTCGACTATTGCATCGAAGAAAAGCCATATAGATGCGCTTACTG CGGTTGTACGAGGTTGTCAATTTTGGGCCTTAATATAAGACCTCGGCGCC TCTGTAGTTTAAGCCGTACATGGCCTCGTCCGGCTTGCTTGCTTGCTTGC TTGCTTGGTTGTTCTCTTCTCGTTCTAGTTTAAAATACAACGAAAAAAAG AAGAAAAAACTCGGAAGTAACGTACATTGCAAACAAAAAAACAGGGCTAC GCGATCAAGACGATCAAGAAGAGCAAGGTCAGCCGGATTGAGAGCTTAAG GCGAGAGATCGAGATCTTGCGCTGTGTGGACCACCCTTGCATCATCAAGT TGTACGACGTTTACGAGGACGAACGGTTCATCCACCTGGTGACGGAGCTC TGCAAGGGTGGGGAGCTGTTCGACCGAATTATTCAGAAGACTGAGAGTGA GGAGGGGCATTACAGCGAAAAGGATGCTAAGGTATGTGGGTGGTATATCA CGTGTTTTCTCGTGTCATTTAATCATTACATTTAGCTTGGTGGTACACAC GCAATTTAGTAATTGGTCCTCGCAGTGTAATATTTAGATAGATAAAGACC GACTTGCTCCGTAATATTTGCGATTAATATACAAGTTATTGAGGCCCGTG GCCATTTCTTTTTTACAACTTATAATCCCATGTGTTTTTAGGGTTGATGC GCAAAATTTAATCGAAATTGGCAAAACCGGGCGGGTGCACGCGCACCGCA AAAAAAAGTTGCCGAAAAAAATGCCAGATTTTGTTCTTTTGGTATTTTTC CAGTGGAAAAACGTGAAAATCGACGAAAAAAAATTGAAAATGGTCCAAAC TAGCCCAACCTTGAGAGGCTATTCATCGTGATACACGAATCGGAACTCAC TTCGGAATAACGCATATTAGTAAAAGATATTGGATTCCAGCGATTCCCTC GGCAGCCTTTGAAAAAGCATTAGGTTTGGAGATGTGAACTACCAAACTCA GCCGGCATGGAGGAGGTATATTCGTCAATGACTAATTACTTGTGTCCTAT TATACCATAAGCGTAGATTCCCCATCAACAGGTAATCAGCACGCGAGAAA AGGCTTGATGGTTTGAACTGAGAAAAAAAAAAAGCTCGTGTCATATTTGT GTGTACAGCGAACCGTGGCGTCGTTATGAGATTGTTAACTAATGGTTGTC TGCGTACCTGTCGTTTTCGTTGTGCGTGCGTCGGTTCCGCGTTGGTGTTG GTGTTGGTGTTCGCGGCAGGTGGTGGTGGCGAGCATCCTGAGTGGTATCG AGTATTGCCACAACGAACACAACATCTGCCACCGCGATCTGAAGCCGGAG AATTTCCTCTTCAAGCGGCCAGACTCGGATACAGAGATTAAGGTGATGAA ACGTAACGTAGTATACAGTTGTGACCCGCTAGGGGCAGGGAGACACTTTT ATTTAAAGATGAATTTCACTGATATAGCCACGCTAAAGTATAAGTGTCTT ATGTTTTGTCATTTTGTAGGAGTTAGATCGATTCCTCAACAATTTGACAT CATATTTTAGAAGGCCAAATTTGTTCAGAGATAAAATTGATTGGAGTAGG GCTGTGGATTACATCTGTGTACTGACTTGGTCTCATATTTTAGTGGTGGG GGTGGCAACTTGAACAATAATAGTACGAACCTACAGCCCTTTTTGTTACA ACATTACTGACTCCTCGACTTGTCGGTGGGGGGGGGGTTATGTAACTGAC CTTCATTTGCAGTTGTGTAGACTAATCAGAAAAATTAAATAAATATAGTA TTATGGGTTATTTTCATATATAACCGCCTGGCGGTGTGGTTGTCGCAAAC TTTGATTAGGTCATGTTTCATTTTACTGTTTTCAAACATCCTGCGCACCA CGCGGGCACCAAGTGTTTTTCAAGAGGACTACGCTATCGATGGGTGCGAT GGGGTGAAGTGACGACGATTAACTTGAAGTGGTTAGAGTGGCGGCGGCGG CGACCTCCGTACAGCAACAACTCGACGAATTGGCGCGATAGCACACAAGC TGAAAAACGTTTTAGTACTGTTTTTCGGGTAACTTGGCTGCAAGAGCCAT CGCGTATAATATGCCAGTATGAATCATGTAGGGTAGGCACATACCAGGTA TGTCTTGCAGCCTTTTCAACCATGTGTAAGCACCCCATGTAGATGATGAC CAAGCAGAACGCTATACAGGGGTTGACAGTCACATGGCGTACTCGTGTTG GACATTTCACGTATAGAGAACGTTCTGGACTTTTTGATGTAAAGGGTATG AGCTGTGGTGCTCCCTTTCTTTCTCCTTGTTTCTTTCTGGGCAAGAGTGA ACGCTTTTTCACACGTTCATTCATTTGGCCGAAATTTGTTGGTGGCTTGT AAAATTGAATCCGTTTTTTTTTTTTTTTTCTGATTTTATCTTGGCTGTTG TACTGACCGGTATGCAGATCATCGACTTCGGCTTGTCGCGGTTCGAGGAT ATGCAGTCGGCCATGACCACTCGGGTCGGCACGCCGTACTACATTGCGCC TGAGGTGCTCTCTCGCAAGTACGACAAGGCATGCGACCTCTGGTCCATCG GAGTTATCACGTACATCCTCCTTGCCGGGTAAGCACACGAACAGAGAACA AAACATGACCAGTTTGGTCTTCTTTCTAGTTCAACGGGGGCTAGTCAAAA GTACGGGCAGATAATACATGAATCACTGTGCCGAATGTGACAAAAACCGT AGAAAAAACAGACGAAGGTATTTAAGCTCAGTCTCCTCAAGCTGCAGGAC GACTTATCCACAAACTGGACAGATTAGGGGACAGTACAGAGAAAACAACG AGTGAAGCGTGAGAGAAGATGGAATATATAATGTAGGAAAAACATGACAA CAAACGCGAAATAAAATGAAGATGTGCTCGAGATGTTTGGAGCTGCGGGA TCCTCATCCACGAACTGACAAATCATCTTTGGCGCATCATATCTCTGGAT GAATAACTTGTGCACCTGTTGCATGCCGAGTTTGTGTAACCTTGAACAAA ATGTGGGCTATATGTAATCATCAGCAAGACTGATAAAAGTGTGAGAAGGT AAGCACGTGGACTGTACTTGCTGGATGCAATTTGCCGAGGAGTTTGTGTC ACGTACGTAGCGGTACTGTGCGTAGGCGTGAGGTAGTCGAGAAGTCATCA CTTGGCGAATACTGTACTCCCGCTTGACTTGCGAAATAACCCCTTTTTTC TCTTATGGATCAGCCCGCGCTCTAATGGTAGTTACTCTAGTACTGTACAA TAATACAGTCATCATTATGTTGGATGTTCGAGTTATGTTGTACAGCTTAT GCCTCAAATTGTAGCTGTTGTACAACTAGACCACAGAAGAAAATCACGGG GGGAGCTCGGCGGGGGTTGCAATTGATTCGTTGTTGGCCACGAGTCCTCA AGGGGTCGGGTCAGCTAGTTGTCTGTGATTCATGAGGGTGAATGTACGTG CTGCCAGCAACCATGCATAGCCGGCGTTTATTTGGTTGGCTTGTGAAAAT ATTCTCTCAGTAGTTATATCGAGACAGGTTGGTCTTACCTTCAATTTGAT GGATGGTTATTGGCATATTGTCTATTTGTACATGTAAACAGGTTTCGAAC CGCATTTCTATGCTCTTGTCGATGTTGTCCTGGTTGTTATTAAAGTTGTT ATATACCCCTATCTCCCCTCCTTGTTTTTGTCAGGTATCCGCCTTTCTAC GGAGAATCCGACCAAGAAATCTTTGCCTCGGTGAGGCAAGGATACTTCGA TTTCCCCTCGCCCGAGTGGGACAACATCTCGTCGGAGGCCAAGGATTTTA TCATGCAACTCTTGCAGAAGGATCCCGCAGCGCGCATGACTGCGACGCAA TCCATCGCACACCGCTGGTTCGCGCGGGGCGATGCGGATGACGCGGATGC GACGGCGACGGCCGAGGAGCCCAGGGACAAGATCAACATGCAGGTACCCT ATATTTGTTTTCGGCGGCTGAGAGATGGGGGAGAGGGGTAGTTTGTGTAG TTGACTTCGTTAGTCAGCAAAATTAATCATAAAGGGGATAATTTGTACAC ATATATAGGTGATGCTGCTGATCTCAAATCGCGCTTAAGTACGTTCACCA GCCAAATTAGATCAAGCAGGGGGTAGTTCGAATGTACTTGGAAAAGAAGT GGGTACGCTGCTTTTAGCAGGACGTCGACCACTAAGTACCAAGAGTGAGA TGACCATGTTGAGGTTATGCATCCCACCTGAAATCTAAGCCTTTCATTCT ATGATTTTGTCAGCAAATTAGATGGAAAAGGGGGTACTGGTGCTGAGGTC TTCACTCCCCACAGTGAGCGAGAGAGATGGGCGGATATAGTCAACGACAA ACGTTCGGCAGAAAGTGTAATTGTAGATGTGTACCTATATTCGATTTTCT TTGCTACACCGTCTGTACTGAAGTAATTATTTATCGGAACAGCGGATACT CCCTACGGTCCCAATCATTATCATAATAGTGTTCTAGTGTTATTTTCCCC TGCTTTCGACGTGAGCAAGGTCAGATACAAACAAACTGTTCGCCTGAAGA GGTGAACGTTCTCGAAGTGTCAAAATATTTGAAATGCCTTTTTGAAACCT GCAAACGTCAGTGCGAAGTTAGCTCGCAACGTTGCACGATCGATACCTGA ACTTTTTGCCCTGTTTTTTACCCTTTACTTGAGTCCTAATCAGCTGTGGA CTGCTTGTTTATGGTTTAAACGTTACGAGGAAAACCAGTGTTTGTCCCTT CCCTTTCAACACGAAAGCAAAGATAGAAGTCTCGCACAACGGCAAAAAAG GGAGCCTCATGTGCACCGGAGATGTATTAACCATCTCTGGAGAAGTGCTT GAGGTTTTTTATTGACGTAAACGTCAGTATTTAGATAGTCGTCGGCAAAA CTAGATTGGTCGTTATAAAGCCCGGTTCCTGAAGGGCTGATGTAGTTGAG TGCGTGGGCGTCGCTGTTAAATAGATTTCAGGATTCCAATTTTTGCTTTT TCGAATTCCCGCCTTTTGTTGTCTCTCTTTTGCTACGTTTTTTTTTTTTT TTCATTTGCTACCGATTTTGGCTCATGTACGAATAATAGGTGAGCATGCA GCGGATTAACCACCGACTGCGAAGGTTCGTGGGCATGAGCAAGCTCAAGA AGGTGGCACTGAATGTGATCGCGCAGCAGCTCACGGAAGTGGAGATCGGC CATCTACGAGAGGTAAGAAGACAGGAGACACCGTCGTAAATTTGCCTAAT TTGTTTGGCCGGCGGCGCCCAGCCGAATCGGAGCAAAACCAATGAAAAAT GGTGTGTATACACCGATGGAGGGGTTATGCTTCATGGACAGGTTTTGTTC GTTTTCTTGTGTGTGTTTGTGTGTCGTTTTTTTTTTTTTTTTTTCCCTTC CCAAAAACACTGTTGTTTTTATTTCTTGTTTTCTGTTTTTGTCGATTTCT CTCCTGTTTTGTGCCCAACTTCGTTTGTAATACATTTGCTGAGTCATTGT CTTGGTCTTCTGTCTTTGCTGCGAAAAACAACAAAAACCGACAATGACAG GTATTCGAACGCCTGGATGCAGATGGCAAGGGAGTGATATCCACAAATGA GCTTGAGCAGGTGGTGCAGCAGGAAGGCCTGGACAATCTCCAGGACGACG TGGTGCGTTTGTTGCAGGGAATAGACATTGACGGGAGCAACTCGCTCAAC TATCGAGAATTTTTGGCCGCCACGATGGAGAGGAATATCTTCATCCGGGA AGAGAACATCCGATGTGCCTTCGACTACTTCGATCTCGACAGCAACTCAG AGGTAAAAGAGCCAACCAGCTAGCTTGCTAGCGCCCTGAAATGATGAGCA TCATCGAGGCTACCGTTTTTTTTGTTTTTTTAGAGTTATTTGGCGTTCCC CGTCCAACAGCAATGAATAGTAAAGCAACGCCCCCACCTGTGGTAAGGTT GTTACGCACGTATGGTGCACATGCGAGTGAAAACAGTGATACTCCCTTGT GACGGTTTTCGTAGCCCGTGTGCCTGATCCAGAAGTCCCACGCTATCAGG ACAGTCTTGCGAACGCTCGGGGTGCCGTCCACACATGATCTTCGGGTCTA GTCGGACCTTCGGGTAACCGACACACGAACCCGGTGTTGGGTTAAGTGCT GGGCAAAGGTTTCCTTCCCTCCTTTTACGAAAGAAAAACAAATGTTCAGG AGGGGCCAGAAATTGTATGTCATATGAGCAGGATCCTGTCGATCTAATTA CCAAGCAGCATGAACCTAAATGTCCGTTAAGTCTACTCGAAAGACTGTTC ATCAGGTAAGCATGCGGAATGTACGTGTTACTCCCCCTTTGTGGCGTAAT TTTGCTGATGCTGATGAGTGTATATGACGCAGGTTTGAAGTCAGCTAGCT GCATAACTTGAAACAAAAATGTGGATACAACGGGCTTATTTTATTAACCT CATTGCGATATTTCAACTAACTCTGGCAGGGTTGAGTCACGAATGAGAGT TCTAGTTCATTTTTTTTTTTCGAGACCCCTTTCCTTCCGCCGCCGCCTCA CCTCGCCTCGCGTCGCTGCCGTGTTTGCACACACCAGATTACGTTGTCCA ACCTTGTCAAGATCTTCGGGGCGGAGGAACACGCGCGCGAGATCATGAAC GATGTCAACATCTCCGGAGAAGGGGTGATCAACTACGATGAGTTCAAGAG TATGATGATGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5404:498..9160+

>mRNA_H-paniculata_contig5404.12843.1 ID=mRNA_H-paniculata_contig5404.12843.1|Name=mRNA_H-paniculata_contig5404.12843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1776bp|location=Sequence derived from alignment at H-paniculata_contig5404:498..9160+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTCGGCCATGACCACTCGGGTCGGCACGCCGTACTACATTGCGCC
TGAGGTGCTCTCTCGCAAGTACGACAAGGCATGCGACCTCTGGTCCATCG
GAGTTATCACGTACATCCTCCTTGCCGGATGCAGTCGGCCATGACCACTC
GGGTCGGCACGCCGTACTACATTGCGCCTGAGGTGCTCTCTCGCAAGTAC
GACAAGGCATGCGACCTCTGGTCCATCGGAGTTATCACGTACATCCTCCT
TGCCGGGTATCCGCCTTTCTACGGAGAATCCGACCAAGAAATCTTTGCCT
CGGTGAGGCAAGGATACTTCGATTTCCCCTCGCCCGAGTGGGACAACATC
TCGTCGGAGGCCAAGGATTTTATCATGCAACTCTTGCAGAAGGATCCCGC
AGCGCGCATGACTGCGACGCAATCCATCGCACACCGCTGGTTCGCGCGGG
GCGATGCGGATGACGCGGATGCGACGGCGACGGCCGAGGAGCCCAGGGAC
AAGATCAACATGCAGGTATCCGCCTTTCTACGGAGAATCCGACCAAGAAA
TCTTTGCCTCGGTGAGGCAAGGATACTTCGATTTCCCCTCGCCCGAGTGG
GACAACATCTCGTCGGAGGCCAAGGATTTTATCATGCAACTCTTGCAGAA
GGATCCCGCAGCGCGCATGACTGCGACGCAATCCATCGCACACCGCTGGT
TCGCGCGGGGCGATGCGGATGACGCGGATGCGACGGCGACGGCCGAGGAG
CCCAGGGACAAGATCAACATGCAGGTGAGCATGCAGCGGATTAACCACCG
ACTGCGAAGGTTCGTGGGCATGAGCAAGCTCAAGAAGGTGGCACTGAATG
TGATCGCGCAGCAGCTCACGGAAGTGGAGATCGGCCATCTACGAGAGGTG
AGCATGCAGCGGATTAACCACCGACTGCGAAGGTTCGTGGGCATGAGCAA
GCTCAAGAAGGTGGCACTGAATGTGATCGCGCAGCAGCTCACGGAAGTGG
AGATCGGCCATCTACGAGAGGTATTCGAACGCCTGGATGCAGATGGCAAG
GGAGTGATATCCACAAATGAGCTTGAGCAGGTGGTGCAGCAGGAAGGCCT
GGACAATCTCCAGGACGACGTGGTGCGTTTGTTGCAGGGAATAGACATTG
ACGGGAGCAACTCGCTCAACTATCGAGAATTTTTGGCCGCCACGATGGAG
AGGAATATCTTCATCCGGGAAGAGAACATCCGATGTGCCTTCGACTACTT
CGATCTCGACAGCAACTCAGAGGTATTCGAACGCCTGGATGCAGATGGCA
AGGGAGTGATATCCACAAATGAGCTTGAGCAGGTGGTGCAGCAGGAAGGC
CTGGACAATCTCCAGGACGACGTGGTGCGTTTGTTGCAGGGAATAGACAT
TGACGGGAGCAACTCGCTCAACTATCGAGAATTTTTGGCCGCCACGATGG
AGAGGAATATCTTCATCCGGGAAGAGAACATCCGATGTGCCTTCGACTAC
TTCGATCTCGACAGCAACTCAGAGATTACGTTGTCCAACCTTGTCAAGAT
CTTCGGGGCGGAGGAACACGCGCGCGAGATCATGAACGATGTCAACATCT
CCGGAGAAGGGGTGATCAACTACGATGAGTTCAAGAGTATGATGATGGAG
ATTACGTTGTCCAACCTTGTCAAGATCTTCGGGGCGGAGGAACACGCGCG
CGAGATCATGAACGATGTCAACATCTCCGGAGAAGGGGTGATCAACTACG
ATGAGTTCAAGAGTATGATGATGGAG
back to top