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Homology
BLAST of mRNA_H-paniculata_contig5403.12842.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.980e-27 Identity = 92/170 (54.12%), Postives = 110/170 (64.71%), Query Frame = 3
Query: 18 DEALVMIGVLKA---WRHSRREDGRVVKQDGGDDGDGDGSV-FVPAETALLQVLAGQAAAALTRLDAEVSQKE--------------GQKDEREAEVKEEVQRLREAMEHLSGSAQGLARQRDDARAALAKAKAILRRMGPALRDVRDRQLGFRHYHDLIVRMSKSVLDN 473
D M+GVLKA W + RE +Q GD+G F E A L V+AGQAAAAL R+ A S++E + +RE VKEE++ LREAMEHLSGSA+GLARQRD+ARAALA+AK LRRM PALR+ RDRQLGFRHYHDLIV MSK+VL +
Sbjct: 1072 DGGQAMMGVLKASESWLLAWRE-----QQHRGDEGHRPPDKGFSGGEMAALAVVAGQAAAALRRVGAAASEREEVLQELDAXXADRVDETQKREEAVKEEMKHLREAMEHLSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQD 1236
BLAST of mRNA_H-paniculata_contig5403.12842.1 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.100e-25 Identity = 78/128 (60.94%), Postives = 92/128 (71.88%), Query Frame = 3
Query: 132 FVPAETALLQVLAGQAAAALTRLDAEVSQKEGQKDE--------------REAEVKEEVQRLREAMEHLSGSAQGLARQRDDARAALAKAKAILRRMGPALRDVRDRQLGFRHYHDLIVRMSKSVLDN 473
F E A L V+AGQAAAAL R+ A S++E +E RE VKEE++ LREAMEH+SGSA+GLARQRD+ARAALA+AK LRRM PALR+ RDRQLGFRHYHDLIV MSK+VL +
Sbjct: 591 FSGREMAALAVVAGQAAAALRRVGAAASEREEVLEELDAXXADRVDETQKREEAVKEEMKHLREAMEHVSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQD 718
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2436 |
| Cds size | 1542 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5403.12842.1 >prot_H-paniculata_contig5403.12842.1 ID=prot_H-paniculata_contig5403.12842.1|Name=mRNA_H-paniculata_contig5403.12842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=514bp
MIGVLKAWRHSRREDGRVVKQDGGDDGDGDGSVFVPAETALLQVLAGQAA
AALTRLDAEVSQKEGQKDEREAEVKEEVQRLREAMEHLSGSAQGLARQRD
DARAALAKAKAILRRMGPALRDVRDRQLGFRHYHDLIVRMSKSVLDNDND
QDQDHGENAIGLNGPSRSSSPPLFANSTADGASWRLGGTGASGSDWRLSV
FGSAGGGYGASSSGLMFMDKSRHGRNHHHNHSSINNNNNEKRSMAEVRDQ
VTAAAANLSRENSGAAINSRSSTTVPAGASSSRRGRVADGGEEGRSFGKK
LYNTAYDTSTNTAALSTLHPASSVSLPRPPVRHNNNNNNNNNNSSNNNSN
SSSNSSSSSSVVGAARPLEKNDHPRRGGLRRAGGGSSSSDVWGGRGMEAQ
ISSSRPGLRFQDLASRDEAANNTPGISSEDDAWKTTAPLGGGGESPLGEK
SEMGVSSLAKGVATGPRINRVVDVSGEGGGSPEILRVLREAVGGGVDGAR
GRSRGRRTWDSRR* back to topmRNA from alignment at H-paniculata_contig5403:8741..13546+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5403.12842.1 ID=mRNA_H-paniculata_contig5403.12842.1|Name=mRNA_H-paniculata_contig5403.12842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4806bp|location=Sequence derived from alignment at H-paniculata_contig5403:8741..13546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTGGCGGGGGCGAGGATGAGGCGCTGGTGATGATCGGGGTGCTCAAG
GTTTGCTTTGCGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGGAAATT
TGGAGATTTTTGCTTTCGTGGATGACGAATGCGAGGGCGTATGGATTTTG
TTATCGGTAATTGCGGTTTGCTCGGGACGGAGGAAGGTTTGCTGCTGTGA
CACGTGTCGGTTTCTATGTGCCGTTTGTACTTGTGGCACAATTAAAATAT
TTTATGAAGACTTTTTTTTACGCTAGCACGGGTGTATATTTATTCTACTC
TTGTCACCGGAGCTTGCTTCGTTCTCTCGGTGCGCAGCGTCGGGAATGCG
TTTACAGATGGGAGAAGCTGCTTAAGACACACAACACTAGAGTTGGAGCG
ACGGTCAAAAAAAAAATCGTTTAGTCATTTGTGTTTTTTCACCGGTTTTG
GGGGGGCAAAATCGGTAAAACCGGTTATCGATTTTAGTAAACCAGCCAGA
GAACAAACGCTTAATATTTTTTCGGTTGCTCTTTCTCGGTTTTCTTAGCC
GATGCCTAACATTCTTGAAAAATTAATACGACGCTGCCGCCCATACCCCC
AACCCCCTGCGTGCTTCATGTTGCTCACAGGCCTGGAGGCACTCTCGCCG
AGAGGATGGGCGAGTGGTTAAGCAGGATGGTGGCGATGACGGTGACGGCG
ACGGAAGCGTGTTTGTCCCGGCAGAGACCGCCCTGCTGCAAGTGCTGGCG
GGGCAAGCAGCGGCGGCTCTGACGCGGCTTGACGCCGAAGTTTCGCAGAA
GGAAGGACAAAAGGACGTGAGTCTTTCCTGGGAGCACCGTGCTTTCGTAG
GGTGCTAACCATAACTGGAATGTATAATACAAGAAAACCCAATGAAGCAG
GAAAAATCAGGAGTGAGGGCGAATGGGGCAGGGGGGGGAGGGGGGGTCAC
GTGTCTAAATTGAGAGATCTGCCCCCCCTCGGTTTTCATATAGTATGATC
TCATAATATGTAAGATGAAGTAGACAAGAAATTTCTTGCAAGTGCAGACT
TTTACTCTGCAAATCGTGATATTATCAGATGTTCAACTGAACTGTGTTAG
TTTTTGTTTTGTTTCCCGAATGAACCACCCCCCTAACACGCCACTTGGCC
GGGATCTTTTACTTTAGGGGCGATTGTATATATATATATATGTATAAAGA
TGTATATGTATATAGAGAGAGAACATCCTAAGCTATAAAAAAAAGGTAAT
TCAATCATGTTTATCTCTACTTTTCGTCGTGGCTCAATTCTCTGTCCGGA
ATGCCCGGGAGTAGTAATGCGTTTTGGTTCTTGCCCTGTATTATCTCGCG
GTGGGGGGGGCAGGGACGGTGGCAGTCCCACTCAATGGTCAACTTTGGGA
TTCACCCTTTCGCAGGCTTTGGTCTGAATAATACATTTCCGGAGCAAAAA
AAAAAAAATCAGAGTATATGGATAACCATGCTAATTGGACTATGACCAAG
TCGCGCGCAATCGGGTTATAACTCTAGGCCTATATATGTATACAGTATGT
ATATATACGCATATAGTGACCATGATTTCTTTGTATACACGGTGACCAAG
CAGGAGCGGGAAGCCGAAGTGAAGGAAGAAGTCCAGCGCCTTCGTGAAGC
GATGGAGCACCTTTCAGGTAGTGCGCAGGGTTTGGCGAGGCAGAGGGATG
ACGCTCGAGCGGCGCTCGCCAAGGCAAAGGCGATTCTACGGCGCATGGGG
CCGGTGAGCAAAAACATTTCTTCATAAGATTTATATTTTCGACGTACAAG
TGTAGTATATACATCCATCTGAGACAGGCGCATATTTATTGACAGTGAAG
AAAACGAATGATAGTAAAAGTGGAGATCATGTTCCTGGAGTTCCTGGGGT
TCCTGAACCCCGGTCCCCTACGCAATAAACCACCAGCAGTGGCGTTTTTG
CTACGTTAACCACAACAGCTTTTCTAGCTGCTTCCAACCCTGGATTATGA
CCAGTTCATCAATGAGAGAACAAAATCCAAGTGCGTGCTCCGCCCTACAT
CCAAATACTTGAATCAACGCGCGAAGCGGGCGGTGTCCCCTCGAGAGGCA
GTCTCTCTTGAAAGCATGGTGTTCTTATGAACATCGCTAAATTCGCTCAC
GTCTGATGGGGGAAAAGAATGGACTTTGTATGTAGGTTCAGCGTTTTTGC
AAGTTTTAAGTTTTGTCAAGTTTTGAGATTCGCTCATCCGTGTGTCATCA
GATAGTTGTGTCGATTTCCGTAGGTAAACAGGGAATATTTATATTTTATA
ATGTCTCCACTTCATTCCATATGTGCGGACAGTCAGTGCTGCGCGCGGGC
CAGACGCTTGACTAATGATTTTGGTAAATTTAATAGTTGTACTAGTAGTA
CTACTAGTACTACTAGTAATAGTCCAGCTACCTACTGTATCGGTACTTGC
AAGTAAGCGGTCAAGTTGCGATTCACGATATCGACACTTAACTCAATAGC
GTCTAGTGTTACACTGGTAGCTGGTAGACCAGTGGGCCAGTGGACTCGGA
CCCTCTCGGCACGTGTAAAGGCAAGCCAGTAACGTAATTAATTCAGACCC
TCCCCGTGACCCCCGTGACCCCCGTCCCCACTTTTCAGTGAATGAGGTAA
CTACTTTTGCTCGATGTACACACGTGTGCGAAACACGGCAGTGCCGTAAG
CTTTTTAATTCGTCTCCCCCTCCCCCCTGCACCAGGCTCTTCGAGATGTT
CGCGACCGACAGCTGGGCTTCCGCCACTACCACGACCTGATCGTGAGGAT
GTCCAAGAGTGTGCTCGACAACGACAACGACCAAGACCAAGACCACGGCG
AAAACGCCATTGGTCTGAATGGCCCGAGCAGGAGCAGTAGCCCTCCGCTC
TTTGCGAACAGCACCGCCGACGGGGCATCGTGGAGATTGGGGGGCACTGG
GGCATCGGGTTCAGATTGGCGTCTCAGCGTATTCGGCTCCGCGGGGGGTG
GCTACGGAGCCTCCAGCAGCGGGTTAATGTTCATGGACAAAAGCAGGCAC
GGGCGCAATCACCACCACAACCACAGCAGTATCAACAATAACAACAACGA
AAAGCGGAGCATGGCAGAAGTACGGGATCAGGTCACCGCGGCCGCCGCCA
ACCTCTCTCGCGAAAACAGCGGAGCAGCTATCAACAGTCGGAGCAGCACT
ACGGTTCCCGCTGGGGCGAGTAGTAGTCGTCGTGGTCGTGTCGCTGACGG
CGGCGAAGAAGGCCGCAGTTTCGGAAAGAAATTGTACAATACTGCGTACG
ATACTAGCACAAATACCGCTGCCCTCTCTACTCTACATCCAGCCTCCTCC
GTATCGCTTCCAAGGCCACCGGTGAGACATTGGAAAAAAAAGAATAACAA
CAACAACAACAACAACAACAACAACAACAATAGCAGCAACAACAACAGCA
ACAGCAGCAGCAACAGCAGCAGCAGCAGTAGTGTGGTAGGCGCGGCGCGT
CCGCTCGAGAAAAACGATCACCCTCGCCGCGGCGGCCTGCGTCGTGCGGG
CGGAGGGAGCAGTAGCAGCGACGTCTGGGGGGGGCGTGGCATGGAAGCGC
AAATTTCCTCGTCCCGCCCCGGTCTACGATTTCAAGACCTGGCGAGTAGG
GACGAGGCCGCTAATAATACCCCTGGGATATCATCCGAGGATGATGCATG
GAAAACCACAGCCCCCCTCGGCGGCGGCGGCGAATCCCCGCTGGGCGAGA
AAAGTGAAATGGGGGTATCTTCGCTCGCGAAAGGCGTTGCTACGGGTCCT
CGTATTAATAGGGTGGTCGACGTTAGTGGTGAAGGCGGCGGGAGTCCGGA
GATTTTGAGGGTGTTACGGGAGGCTGTGGGTGGAGGTGTTGATGGGGCGA
GGGGGAGGTCGCGCGGGAGGCGTACGTGGGACTCTCGTCGCTGAGTCGAA
AAAAATAAATGGTACCTATTTATGGCGCACGTACAACTTGTTGGTTGATT
GGTTGGTTGGTTGGTTGGTTGGATAGTTGGCTGATGGATTGGTTGGCGTT
TCCCCCCTCTTCTCATGTACAGTTGGGTTGCTCGGGGGGGGGTTGGGATT
TGTGTTCTCCTTCAGTAGACTTTTCAAATGATCATGATCTTGATCATGAT
GGTCGACGCGGATTTTAGTGGTTCCTTGTGCTTTCATCCTCAAGTGCGGG
GCTGACAATTAGAAGCGTGTTGTTTGTGTGAGTGCGTGCTTGCGGTGGTG
TTATTAGGCCGACTCTTTGGTGGTCTCTTCCCGGAGGAGGACGTAAGGAC
GGGGGGAGGGGGGCAGACAGGTCTCATCATGAAAAAGCGACGACAACCCC
AAGGAAGTGTCCCACGTTATTATTTTCATAGCGCCGTTGAGACCCAGTGT
ATGTCATAGGATAGTACGACGGAAAAATGAGGGGTCTACTATCTACGAAT
GTACAGCTGGCGGGTCTACTGCCTACCAACGTCTACAGAAGGTCTACTTG
TTGAATGGAGCCTCTTGAATGGCTGTATCGCTATACACGTTTCGCAGATA
TCCGGCAGCGGCAAAAGTATCTAGCTGCTGCCTGCCTGCCCCCAAAGTCG
CGAGGCAAGAAAAATGTTGCATGTGTTTGTGTGTTGTGTAGTGTTTGCCA
GTTTCTCGTGCGGTATGTATCAGTTTTATATTAATATTGCGTATTTCTTT
TCGTGGCGTGTTGGTGGGTTGGCGACCGTTTTTTTCACTCTCCCCCATGC
GCCATAAATTCCTAAATAGAAGCCCTGTCTTGAGCCTTTTATCACGTGCA
TGGAGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig5403:8741..13546+ >mRNA_H-paniculata_contig5403.12842.1 ID=mRNA_H-paniculata_contig5403.12842.1|Name=mRNA_H-paniculata_contig5403.12842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3084bp|location=Sequence derived from alignment at H-paniculata_contig5403:8741..13546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGGGGTGCTCAAGATGATCGGGGTGCTCAAGGCCTGGAGGCACTC
TCGCCGAGAGGATGGGCGAGTGGTTAAGCAGGATGGTGGCGATGACGGTG
ACGGCGACGGAAGCGTGTTTGTCCCGGCAGAGACCGCCCTGCTGCAAGTG
CTGGCGGGGCAAGCAGCGGCGGCTCTGACGCGGCTTGACGCCGAAGTTTC
GCAGAAGGAAGGACAAAAGGACGCCTGGAGGCACTCTCGCCGAGAGGATG
GGCGAGTGGTTAAGCAGGATGGTGGCGATGACGGTGACGGCGACGGAAGC
GTGTTTGTCCCGGCAGAGACCGCCCTGCTGCAAGTGCTGGCGGGGCAAGC
AGCGGCGGCTCTGACGCGGCTTGACGCCGAAGTTTCGCAGAAGGAAGGAC
AAAAGGACGAGCGGGAAGCCGAAGTGAAGGAAGAAGTCCAGCGCCTTCGT
GAAGCGATGGAGCACCTTTCAGGTAGTGCGCAGGGTTTGGCGAGGCAGAG
GGATGACGCTCGAGCGGCGCTCGCCAAGGCAAAGGCGATTCTACGGCGCA
TGGGGCCGGAGCGGGAAGCCGAAGTGAAGGAAGAAGTCCAGCGCCTTCGT
GAAGCGATGGAGCACCTTTCAGGTAGTGCGCAGGGTTTGGCGAGGCAGAG
GGATGACGCTCGAGCGGCGCTCGCCAAGGCAAAGGCGATTCTACGGCGCA
TGGGGCCGGCTCTTCGAGATGTTCGCGACCGACAGCTGGGCTTCCGCCAC
TACCACGACCTGATCGTGAGGATGTCCAAGAGTGTGCTCGACAACGACAA
CGACCAAGACCAAGACCACGGCGAAAACGCCATTGGTCTGAATGGCCCGA
GCAGGAGCAGTAGCCCTCCGCTCTTTGCGAACAGCACCGCCGACGGGGCA
TCGTGGAGATTGGGGGGCACTGGGGCATCGGGTTCAGATTGGCGTCTCAG
CGTATTCGGCTCCGCGGGGGGTGGCTACGGAGCCTCCAGCAGCGGGTTAA
TGTTCATGGACAAAAGCAGGCACGGGCGCAATCACCACCACAACCACAGC
AGTATCAACAATAACAACAACGAAAAGCGGAGCATGGCAGAAGTACGGGA
TCAGGTCACCGCGGCCGCCGCCAACCTCTCTCGCGAAAACAGCGGAGCAG
CTATCAACAGTCGGAGCAGCACTACGGTTCCCGCTGGGGCGAGTAGTAGT
CGTCGTGGTCGTGTCGCTGACGGCGGCGAAGAAGGCCGCAGTTTCGGAAA
GAAATTGTACAATACTGCGTACGATACTAGCACAAATACCGCTGCCCTCT
CTACTCTACATCCAGCCTCCTCCGTATCGCTTCCAAGGCCACCGGTGAGA
CATGCTCTTCGAGATGTTCGCGACCGACAGCTGGGCTTCCGCCACTACCA
CGACCTGATCGTGAGGATGTCCAAGAGTGTGCTCGACAACGACAACGACC
AAGACCAAGACCACGGCGAAAACGCCATTGGTCTGAATGGCCCGAGCAGG
AGCAGTAGCCCTCCGCTCTTTGCGAACAGCACCGCCGACGGGGCATCGTG
GAGATTGGGGGGCACTGGGGCATCGGGTTCAGATTGGCGTCTCAGCGTAT
TCGGCTCCGCGGGGGGTGGCTACGGAGCCTCCAGCAGCGGGTTAATGTTC
ATGGACAAAAGCAGGCACGGGCGCAATCACCACCACAACCACAGCAGTAT
CAACAATAACAACAACGAAAAGCGGAGCATGGCAGAAGTACGGGATCAGG
TCACCGCGGCCGCCGCCAACCTCTCTCGCGAAAACAGCGGAGCAGCTATC
AACAGTCGGAGCAGCACTACGGTTCCCGCTGGGGCGAGTAGTAGTCGTCG
TGGTCGTGTCGCTGACGGCGGCGAAGAAGGCCGCAGTTTCGGAAAGAAAT
TGTACAATACTGCGTACGATACTAGCACAAATACCGCTGCCCTCTCTACT
CTACATCCAGCCTCCTCCGTATCGCTTCCAAGGCCACCGGTGAGACATAA
CAACAACAACAACAACAACAACAACAATAGCAGCAACAACAACAGCAACA
GCAGCAGCAACAGCAGCAGCAGCAGTAGTGTGGTAGGCGCGGCGCGTCCG
CTCGAGAAAAACGATCACCCTCGCCGCGGCGGCCTGCGTCGTGCGGGCGG
AGGGAGCAGTAGCAGCGACGTCTGGGGGGGGCGTGGCATGGAAGCGCAAA
TTTCCTCGTCCCGCCCCGGTCTACGATTTCAAGACCTGGCGAGTAGGGAC
GAGGCCGCTAATAATACCCCTGGGATATCATCCGAGGATGATGCATGGAA
AACCACAGCCCCCCTCGGCGGCGGCGGCGAATCCCCGCTGGGCGAGAAAA
GTGAAATGGGGGTATCTTCGCTCGCGAAAGGCGTTGCTACGGGTCCTCGT
ATTAATAGGGTGGTCGACGTTAGTGGTGAAGGCGGCGGGAGTCCGGAGAT
TTTGAGGGTGTTACGGGAGGCTGTGGGTGGAGGTGTTGATGGGGCGAGGG
GGAGGTCGCGCGGGAGGCGTACGTGGGACTCTCGTCGCTGAAACAACAAC
AACAACAACAACAACAACAATAGCAGCAACAACAACAGCAACAGCAGCAG
CAACAGCAGCAGCAGCAGTAGTGTGGTAGGCGCGGCGCGTCCGCTCGAGA
AAAACGATCACCCTCGCCGCGGCGGCCTGCGTCGTGCGGGCGGAGGGAGC
AGTAGCAGCGACGTCTGGGGGGGGCGTGGCATGGAAGCGCAAATTTCCTC
GTCCCGCCCCGGTCTACGATTTCAAGACCTGGCGAGTAGGGACGAGGCCG
CTAATAATACCCCTGGGATATCATCCGAGGATGATGCATGGAAAACCACA
GCCCCCCTCGGCGGCGGCGGCGAATCCCCGCTGGGCGAGAAAAGTGAAAT
GGGGGTATCTTCGCTCGCGAAAGGCGTTGCTACGGGTCCTCGTATTAATA
GGGTGGTCGACGTTAGTGGTGAAGGCGGCGGGAGTCCGGAGATTTTGAGG
GTGTTACGGGAGGCTGTGGGTGGAGGTGTTGATGGGGCGAGGGGGAGGTC
GCGCGGGAGGCGTACGTGGGACTCTCGTCGCTGA back to top
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