mRNA_H-paniculata_contig5403.12840.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5403.12840.1
Unique NamemRNA_H-paniculata_contig5403.12840.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5403.12840.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.930e-18
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:    1 REGRGSRLGATALAARSRRRLLWQTLSAWRAQAAANSALRAATVARLSSAAKNLVRQAFGRWKDRLAAAARAQAALSMLARVSNRRRSDRAEMRLALRSWKRQARVGDADGG 336
            REGRG+RLGA ALAAR            WR +A A+S LR+  ++R+S AA+ LV +AF  W++    A     AL+ LAR S+RRRSDRAEMRLALR+W R A  GD DGG
Sbjct:  635 REGRGARLGAAALAAR------------WRGEARASSRLRSRALSRISQAAQGLVSEAFSTWREGSRIAHGKAKALTALARASDRRRSDRAEMRLALRTWTRNACGGDGDGG 734
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BLAST of mRNA_H-paniculata_contig5403.12840.1 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.390e-5
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:  223 ALSMLARVSNRRRSDRAEMRLALRSWKRQARVGDADGG 336
            AL+ LAR S+RR+SDRAEMRLALR+W+R A  GD DGG
Sbjct:  340 ALTALARASDRRQSDRAEMRLALRTWRRNACGGDGDGG 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5403.12840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I6_9PHAE1.930e-1852.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ01_ECTSI4.390e-571.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5403contigH-paniculata_contig5403:5447..6442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008000.1
Exons2
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930554.4684215-CDS-H-paniculata_contig5403:5446..54931622930554.4684215-CDS-H-paniculata_contig5403:5446..5493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5403 5447..5493 +
1691481345.9291947-CDS-H-paniculata_contig5403:5446..54931691481345.9291947-CDS-H-paniculata_contig5403:5446..5493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5403 5447..5493 +
1622930554.4831884-CDS-H-paniculata_contig5403:6152..64411622930554.4831884-CDS-H-paniculata_contig5403:6152..6441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5403 6153..6441 +
1691481345.939988-CDS-H-paniculata_contig5403:6152..64411691481345.939988-CDS-H-paniculata_contig5403:6152..6441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5403 6153..6441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5403.12840.1prot_H-paniculata_contig5403.12840.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5403 5447..6441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5403.12840.1

>prot_H-paniculata_contig5403.12840.1 ID=prot_H-paniculata_contig5403.12840.1|Name=mRNA_H-paniculata_contig5403.12840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
REGRGSRLGATALAARSRRRLLWQTLSAWRAQAAANSALRAATVARLSSA
AKNLVRQAFGRWKDRLAAAARAQAALSMLARVSNRRRSDRAEMRLALRSW
KRQARVGDADGG
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mRNA from alignment at H-paniculata_contig5403:5447..6442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5403.12840.1 ID=mRNA_H-paniculata_contig5403.12840.1|Name=mRNA_H-paniculata_contig5403.12840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=996bp|location=Sequence derived from alignment at H-paniculata_contig5403:5447..6442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAAGGCCGGGGGTCTAGATTGGGCGCTACGGCCTTGGCAGCGAGGTT
AGTGGGGATCGGTGGGGGGTGAGGGGGGTGAGGGTATCTGATGTGCGTAT
GTATAATTCAAATGGTCATGATATCTTGAAGAAATGAAAAATGGAGGGAG
TACCATGCGTTTCTGGTGTGTTGAAAATTTTAGTGTCTGTGCGATGTCCC
CTCGAGGATAGGAGAGCTCTGTTTGTGCTACCATGTACTGTATTTTTAAT
TGCGCATGTACAAATGTGAGTTCAGATTAGCAGATCGCCCCTTGCCGTGT
GCCCAAATTGCCCCCCAAAAATATCACCCAACGCCAAAGGGTGTGTGTGT
GCGTGTTGAGAATAGTAGAGCTCCGTTTGTGCTACTATGTACTGTATTTT
TAATTGTGCGTGTACAAAAGCGAGTTCAGATTAGCAAATTCCCCTGCGCT
GTGTGTGTGTGCGTGTTTCTTGCAATCCCTAAGTTACCAAAATATATTTC
ATCAAATTTAATCAAATATTGACTATACAACCTACAAAATCACACTCTAA
ATTATTCATCACAAATATTCCAAGTGAGACAACACAAACACACCCATTTC
CCCACCCCACGTCACTTGCACTCACAGACTATCGAACCTCCACAATCGCC
CCCCTAACCCACAGCTCATAACGCCCAACCCCCGACCCCCGACTCCCGAC
CCGTAGATCAAGACGCCGATTACTATGGCAAACCCTTTCTGCCTGGCGCG
CCCAAGCCGCCGCCAACTCGGCGCTCCGCGCCGCAACGGTCGCTCGCCTT
TCCTCCGCGGCCAAAAATCTCGTTCGGCAGGCCTTCGGCCGCTGGAAGGA
TAGATTGGCAGCGGCGGCGAGGGCCCAGGCAGCGCTGTCCATGCTCGCGC
GGGTTTCCAATCGACGGCGTTCTGATCGCGCGGAGATGCGTCTGGCCTTG
CGCTCTTGGAAGCGGCAAGCGCGGGTAGGAGATGCCGACGGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5403:5447..6442+

>mRNA_H-paniculata_contig5403.12840.1 ID=mRNA_H-paniculata_contig5403.12840.1|Name=mRNA_H-paniculata_contig5403.12840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig5403:5447..6442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAAGGCCGGGGGTCTAGATTGGGCGCTACGGCCTTGGCAGCGAGAGG
GAAGGCCGGGGGTCTAGATTGGGCGCTACGGCCTTGGCAGCGAGATCAAG
ACGCCGATTACTATGGCAAACCCTTTCTGCCTGGCGCGCCCAAGCCGCCG
CCAACTCGGCGCTCCGCGCCGCAACGGTCGCTCGCCTTTCCTCCGCGGCC
AAAAATCTCGTTCGGCAGGCCTTCGGCCGCTGGAAGGATAGATTGGCAGC
GGCGGCGAGGGCCCAGGCAGCGCTGTCCATGCTCGCGCGGGTTTCCAATC
GACGGCGTTCTGATCGCGCGGAGATGCGTCTGGCCTTGCGCTCTTGGAAG
CGGCAAGCGCGGGTAGGAGATGCCGACGGAGGGATCAAGACGCCGATTAC
TATGGCAAACCCTTTCTGCCTGGCGCGCCCAAGCCGCCGCCAACTCGGCG
CTCCGCGCCGCAACGGTCGCTCGCCTTTCCTCCGCGGCCAAAAATCTCGT
TCGGCAGGCCTTCGGCCGCTGGAAGGATAGATTGGCAGCGGCGGCGAGGG
CCCAGGCAGCGCTGTCCATGCTCGCGCGGGTTTCCAATCGACGGCGTTCT
GATCGCGCGGAGATGCGTCTGGCCTTGCGCTCTTGGAAGCGGCAAGCGCG
GGTAGGAGATGCCGACGGAGGG
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