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Homology
BLAST of mRNA_H-paniculata_contig54.12832.1 vs. uniprot
Match: D7FIA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA2_ECTSI) HSP 1 Score: 180 bits (456), Expect = 6.160e-53 Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = 2
Query: 26 MEDCQAAVTHVRSQTVAVRKTAAEYLKGDLLRGERQTNGDPKWPAILGSFHVAANQVAELVEEVDPVLSYFAYQPLRATAKPGDIPTFLSTKLLPRNDGELLEKRDSSKRAQEEENSHMEDVARFNNSLVDISTSYQ--AAADNLLRELGPPSGA 484
ME C AAVTHVRS+ A+RKT +EYLKG+LLRGER TNGDPKWP+IL SF VAANQV EL EEVDPVL++FAYQPLRATAKPGDIP FLSTKL+PR+D KRD SH+E V +FN+S+ DIS + AD++L +L SG+
Sbjct: 1 MEHCNAAVTHVRSKAAAIRKTTSEYLKGELLRGERLTNGDPKWPSILSSFDVAANQVVELAEEVDPVLNFFAYQPLRATAKPGDIPMFLSTKLMPRSDSA---KRDERSEGSVGSRSHIEAVEQFNDSVDDISNFFNDSVGADDVLSKLVSLSGS 152
BLAST of mRNA_H-paniculata_contig54.12832.1 vs. uniprot
Match: A0A835YKI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI8_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.190e-17 Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = 2
Query: 26 MEDCQAAVTHVRSQTVAVRKTAAEYLKGDLLRGERQTNGDPKWPAILGSFHVAANQVAELVEEVDPVLSYFAYQPLRATAKPGDIPTFLSTKLLPRNDGELLEKRDSSKRAQEEENSHM--------EDVAR-FNNSLVDISTSYQAAADNLLRELGPPSG 481
ME A+ VR+Q A+R T +++ +L + NG+P WP ++ SF V A Q+A+L E+VDPVL +FA+QP+R TA P IP FLST+ L D + R + + +E E + EDVA +N ++ +Y+ A+ +L + SG
Sbjct: 1 MESSIPALNAVRNQANAIRTTLTHHIEREL-----RMNGNPSWPELINSFQVVARQLADLAEDVDPVLQFFAFQPVRPTANPAHIPLFLSTRPLAEMDAADAKLR-ACREGKEGEGAGAASGGAAAGEDVAETYNTAVQSAEDAYEKASQAVLASITAASG 155
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-11_001140.1 |
| Exons | 5 |
| Model size | 972 |
| Cds size | 468 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig54.12832.1 >prot_H-paniculata_contig54.12832.1 ID=prot_H-paniculata_contig54.12832.1|Name=mRNA_H-paniculata_contig54.12832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MEDCQAAVTHVRSQTVAVRKTAAEYLKGDLLRGERQTNGDPKWPAILGSF
HVAANQVAELVEEVDPVLSYFAYQPLRATAKPGDIPTFLSTKLLPRNDGE
LLEKRDSSKRAQEEENSHMEDVARFNNSLVDISTSYQAAADNLLRELGPP
SGARS* back to topmRNA from alignment at H-paniculata_contig54:16413..19936- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig54.12832.1 ID=mRNA_H-paniculata_contig54.12832.1|Name=mRNA_H-paniculata_contig54.12832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3524bp|location=Sequence derived from alignment at H-paniculata_contig54:16413..19936- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGCGCTTGTGAGATAGCCTAGCATGGTGAGAGAATTGAATGTAGGGC
ACTCAAACAGTGAACTTATATACATTCATACTCTCGTGGAATTTTTAGAG
TGTTCGTTGACTACTCGCTGCTGCTCTTGCAGTCATTCCAGAGAGAATCA
AGTACAAATTATCACAGGGAAGAGAGACTGTGTACCTCCTCTGTTTCGTG
GAGGGGCGACGAATATACAACGGGAGTTAGCCACATTCGAAAGTAGTAGG
TGTTGATAACATCTTGTTGGACACTAGTTTAATTGACTGGCACCGTGAAG
TCGAGGTTGACTGGTACAGTAGATTCTAAATATATCTGCTTAATCTGTTT
TTCTACTGTCCAGGAAGATTGTCAAGCAGCTGTCACGCACGTAAGATCTC
AGACTGTGGCTGTACGAAAAACAGCTGCCGAGTACCTGAAAGGCGATTTA
CTGAGGGGTGAGCGGCAAACAAATGGAGATCCGAAATGGTGAGCTTAGCC
CAGATTTTCAGTCTTTTTCGTTCTCCAACGCGTTCGCTACTGAGAGTTGC
GGAGTTTGTTCGAACAATAGAGTAGAGCTTTGTGGATTAGCTTCATAACC
AATTGGACAATGAAAACATTTGTCAATAAATTGATATATTCCATGGATAT
TCAGCTTTTTGCTTTTTGGCATAACCGATCCTATTTAGCATCCGATAAAC
CAATACAAATCCCAATTTTCATAGTTCCGCTGATCCAACAACGCAGTCCA
CGAATTTTAATCAAACGTTTTGCACATTTTTGAGTCAGACCCCATTTATT
GAGCTCGACGCAACTAACATCCTTCGCCCACCAGTGCAACAGCTGTGGGT
AGACTTGCAGCTATCAAAGGAGCATTAAAGTACATCAACAATTCCGCACT
TCCAAATGTTTTTCTGCATACGTTAAGGCCATCTCTTATGGGGTCGAATT
TTTCCAGTCGAACACAGATTTTCGAATTTTTCGACTCAGAGAAATTCGAT
TTCCCGTGTTATGTGGTTAGATTTCTTGGAAATCTGAGTTGAGAAATCCG
AGACGGGATGTACAGCCGGTCCTATTCCCCGATTCCTGGCAGAAATCAGA
GTTGCCCTCGTGTATCGAATTTCTCGGAGTACCACCATACGAATGCGTTA
ATATTGTTTTTCATCCAGCGCTTGAAATGTCACAGCCTATAGCGTTACAC
AACCACGAGGGATACAGATAAGCCAAGGTGTGTGACGCCCGCCGCCATAT
AGAACTTGCGGGACTGCTAGCCCGGGGGTTTCCTCCACCCAGCGGAGGAA
GCTGTGAACCGCGATCTTATCGTACAATTCAACCGCGGCCTTAATCCTGT
TGGCCTGAGACATGGTCCCACTCTTCTTATTCACACCAGTACAAGCGTAC
CACAGCGGTACACTCTGCAGTATCATCCACTGCGCCTTGTTGACAGCCGA
TTTGATTCCCTGAGCCTTCATCTCACTCCACATCCATTCCTCGCATGGTT
TCGTTGTAAGATGCGTCGCAGCTGACGGTACACTCATGATCATGTGCTCT
TTAAATGGTGATGCGAGTGTGTGCTGGGGGGTGCGCTGGAGGGTGGCGTG
TACGAGGGTGAATGGTGTGCTCGAGGACCCAATCTGGAGGGTGTGTTTGA
ATTTTGAAGTATACCACTTGTACTCCTACGCCTGCAAGCCTCCATCAAAA
ACCACCTTCGGGAAATCCGATCCCATAACAAACGCGAATCAAATATTGGA
GATCAGATTTTTGCACCCTTCGAGAAATCAGAAAGTAGAGAAATTCGACT
GAAGTATCCGACCCCGTAAGAGATGGTCTAACGTCGTCTGTATCGTCTGG
AATTTACAATTGTACCCAGAGCAAATCGTTGCTAGCAGTGGCTCCAAGAA
TTTAACCTTGTGGTGGGAAAGATACAAAGATACCGAGTAAAAAAATCGTC
GTATAAGAAACCCCGCCACACAGGACGAAGGAATTTAACCCTCAGGACGC
CAGAGGCTGTTTCGGAAAATGTAGAAAGGAAGCTAATATGAAATGTAAAG
CGCTGCAGTGGTTGTACGCAAATCGATCAACTTCCTGTCTCTGCTGCATT
ATACGTCAAGTCTGGCGTGTGTTGCGATCGCATTGAGATATGTGCATGGC
AGCATGCCCCAGTAGTTACCTGCGCGTCCTCAGCCTAGGGGGGGGTACTT
TCAAAGGATATTGCTCACTGACCCAGATCCATGATCGCAGACTCCTTCGA
CAGTGCAGGATCGTACTGTCTCGGGTCTAAATGGCAAGTGATGTCATGGT
ACCACGTTCCCCTCAATCAGGCCAGCCATTCTGGGCAGTTTCCATGTCGC
GGCGAATCAAGTGGCTGAGCTTGTAGAAGAGGTTGACCCAGTCTTGAGCT
ACTTTGCCTACCAGCCTCTGCGAGCTACAGCCAAGCCCGGCGACAGTGAG
TCTGAATACTATACGAAAGGCTTAGTGGGGGCACTGCGTCCCGCACAGTA
CCCGGTATGACACGTGTCGAGTGACTGCTAAATGTCGCTATTACGGTATA
GCTATATATCTGATATGAACGTGTTGATGATTTCGTCTCTCAGTGCAGGT
ACTCTGCACGGATATCTATGCCTGGTCAACGGTTTGTGGTGATCAAGCTA
ACGTACTTGGTCATAAGAGCGTGCATTACTGCACAATAATGTACTGAATA
TCCAAGGTAGATGTCATGCTGCTAACGGTCGAAACTAATTACATGAACGA
ACGCAGCGGATAGTGATCGATCATGACCTTTCTTCCCAATTAATTTGTGT
TTGCCGCTCGGTAGTACCAACTTTCCTGAGCACCAAGCTTCTGCCAAGGA
ACGACGGGGAGTTACTCGAGAAGCGCGATAGTTCGAAACGAGCACAGGAA
GAGGAAAACAGCCATATGGAGGACGTCGCGCGTTTCAATAACTCTCTAGT
GGATATCAGCACTTCATATCAAGCAGCAGCTGACAATTTACTAAGGGAGC
TTGGGCCTCCGTCTGGGGCTCGCAGTTAGTTTGTCCAATAACACTTGCCG
GAATTTGTATTGAGTCGCGTACTATGTTCATGATGAAAGGTTGGTGGCCT
TATTGATGCCCTTACCGCAGCAGCTTTGTCTCTTGCACACAAATTAATGC
GTTCCGTGGCTCGATGAGTATCCGGTCACGAGTAAAAAATGTTCCCGCAT
TCTCCGACTCGCCGAACAACAATTCCGTGAGAGAGCTTTGCCAATAAATC
CTGCCCAAGTAGCAGCAGCCATACATCGGCGGTGACGTTGTAAAGCACCC
CCAGATGGGTGATAAACCTCACCAAACTTGGTTTACTGGCGATCAGGCCC
TGCACTCTACCGACAGAGCTCATCTATCGACTGATTCGCACGAAACATTA
TCAACGATGACACGACTTTCGTTGTCACTAAATAGTGCCGTAAGTGGCGA
TTCATATATCCGTGATACGGGATCAACTTTCCTCTCTGCTCAAATTGCAT
CCGCTCATTATGCGATTATCCGCT back to topCoding sequence (CDS) from alignment at H-paniculata_contig54:16413..19936- >mRNA_H-paniculata_contig54.12832.1 ID=mRNA_H-paniculata_contig54.12832.1|Name=mRNA_H-paniculata_contig54.12832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig54:16413..19936- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGAAGATTGTCAAGCAGCTGTCACGCACGTAAGATCTCAGACTGT
GGCTGTACGAAAAACAGCTGCCGAGTACCTGAAAGGCGATTTACTGAGGG
GTGAGCGGCAAACAAATGGAGATCCGAAATGGAAGATTGTCAAGCAGCTG
TCACGCACGTAAGATCTCAGACTGTGGCTGTACGAAAAACAGCTGCCGAG
TACCTGAAAGGCGATTTACTGAGGGGTGAGCGGCAAACAAATGGAGATCC
GAAATGGCCAGCCATTCTGGGCAGTTTCCATGTCGCGGCGAATCAAGTGG
CTGAGCTTGTAGAAGAGGTTGACCCAGTCTTGAGCTACTTTGCCTACCAG
CCTCTGCGAGCTACAGCCAAGCCCGGCGACAGCCAGCCATTCTGGGCAGT
TTCCATGTCGCGGCGAATCAAGTGGCTGAGCTTGTAGAAGAGGTTGACCC
AGTCTTGAGCTACTTTGCCTACCAGCCTCTGCGAGCTACAGCCAAGCCCG
GCGACATACCAACTTTCCTGAGCACCAAGCTTCTGCCAAGGAACGACGGG
GAGTTACTCGAGAAGCGCGATAGTTCGAAACGAGCACAGGAAGAGGAAAA
CAGCCATATGGAGGACGTCGCGCGTTTCAATAACTCTCTAGTGGATATCA
GCACTTCATATCAAGCAGCAGCTGACAATTTACTAAGGGAGCTTGGGCCT
CCGTCTGGGGCTCGCAGTTAGTACCAACTTTCCTGAGCACCAAGCTTCTG
CCAAGGAACGACGGGGAGTTACTCGAGAAGCGCGATAGTTCGAAACGAGC
ACAGGAAGAGGAAAACAGCCATATGGAGGACGTCGCGCGTTTCAATAACT
CTCTAGTGGATATCAGCACTTCATATCAAGCAGCAGCTGACAATTTACTA
AGGGAGCTTGGGCCTCCGTCTGGGGCTCGCAGTTAG back to top
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