mRNA_H-paniculata_contig54.12831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54.12831.1
Unique NamemRNA_H-paniculata_contig54.12831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: A0A6H5JID1_9PHAE (ELMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID1_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 4.550e-94
Identity = 166/316 (52.53%), Postives = 214/316 (67.72%), Query Frame = 3 
Query:   63 MSIVKKGKISYQAFLRMLRRICKFLVRQLTTKGELHRAVLRRTRTASGRRSGLSAQLVADIAKSLARSS--QLEEVKSVVFGSKPFAVDDVLKAIICVKKISDVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRRED-WGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIKDRSNARFPRLVE 1001
            MS+ KK + + +AF R++RRI K+L+R+LT + E+ R +         R  G S++LV  IA+S+ RSS  ++E VK  V G  PF V      ++  K I D +    L W LQ+L+ VN +H KV  LQ   YD ++  HVALL++LW +L+P  RR D W  +GFQNG  PE+DFRGMG+LGLHQLV F+E  N EA+ +L  S +P+RYFPFAAAGIN+TAFT+ MLEQRRLD  LYE +V+ MPAG L     +E L +AGL   +  YG EYVEFSRFWHES PD+ MAFPGIFGTIK RSNAR+P LV+
Sbjct:    1 MSLAKKSRRAVRAFTRLMRRIVKWLLRKLTAQSEIGRIL---------RSDGHSSELVQVIAQSIGRSSSTEMERVKRAVLGKAPFDVTSTCDELMAAKAIGDEHK-PRLTWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRTDGWAPLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTSLYEAIVKHMPAGTLPVD--EEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPDSTMAFPGIFGTIKQRSNARYPPLVD 304
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BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: A0A8J5J2E0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J2E0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.630e-39
Identity = 93/246 (37.80%), Postives = 139/246 (56.50%), Query Frame = 3 
Query:  255 LARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKIS--DVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRRE------DWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIKD 968
            LA S+Q+ +  +VVF ++PF +D  L  +    K+   D  ++  +   LQ  + VN V+ +V  L+ + Y    PEH  LL+ LW  LKP  RRE      +WGEIGFQ G  P SDFRGMG+  L QL+HF++ +  EA   L +S HP R++PFA  GINVTAF   ++++R LD +LY              + +D+    +GL  +H+ Y   +  F++ W ++ P + MAFP IF ++KD
Sbjct:   63 LALSAQMVQACNVVFDNEPFPMDATLHDVATRAKLDERDATLMTNVRSCLQRCNFVNKVYARVYALKNEAYSSSKPEHEELLEQLWTNLKPDVRREGGRITKEWGEIGFQ-GTDPMSDFRGMGLFSLVQLIHFAKGYKIEAQRALEESNHPTRWYPFAVTGINVTAFMIELIDERLLDIKLYR------------HAANDDV--DSGLKQLHDVYATIFTRFNKLWVDTNPRDVMAFPSIFQSLKD 293
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BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: A0A024G872_9STRA (ELMO domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G872_9STRA)

HSP 1 Score: 155 bits (393), Expect = 8.360e-39
Identity = 95/246 (38.62%), Postives = 143/246 (58.13%), Query Frame = 3 
Query:  255 LARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKI--SDVNVVAAL-GWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRR------EDWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIK 965
            LA S  L      VF  + F V+ V + I     I  +D+ ++  L GW L   + VNAV+ K+  L+ + Y  +N  H  +L+ LW  LKP TRR      ++WGEIGFQ G+ P +DFRGMG+L L QL++F+ K+  EA  +LT+S HP  ++PF+  GINVTAF   ++++R +D ++Y+           +  PS   + + GL  +HEFY   +  F++ W ES P++AMAFP +F T+K
Sbjct:   61 LALSKHLMAQCDRVFDPRTFEVEQVCEEIAVADGIDTNDIRLMQTLRGW-LHRCNYVNAVYQKLFSLRDESYTSQNEMHERMLEELWTNLKPQTRRAHGRITKEWGEIGFQ-GVDPMTDFRGMGILSLIQLLYFTSKYPVEASALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDMKIYQYAE--------TSDPSKHGIDN-GLDAMHEFYCDVFTSFNKLWKESNPEDAMAFPSVFQTLK 295
[Close]
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: T0QIL4_SAPDV (ELMO domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0QIL4_SAPDV)

HSP 1 Score: 150 bits (378), Expect = 7.500e-37
Identity = 109/329 (33.13%), Postives = 159/329 (48.33%), Query Frame = 3 
Query:   57 SAMSIVKKGKISYQAFLRMLRRICKFLVRQLTTKGELHRAVLRRTRTASGRRSGLSAQLVADIAKSLARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKIS---DVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRR------EDWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEA--ILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIKDRSNARFPRLVEDHY 1010
            +A+ + K  +     + R  R +  F       + EL R V    + A   RS     ++  +  S+A    L++ +  +FG KPF  D  L A+   KKI     +   A L  S +    VN V+ KV  L+ + YD  N  H A+L+ LWR LKP  RR      ++WGEIGFQ G  P +DFR MG+L LHQL++++ K+  EA  +  L  S HP +++PFA  GIN+T F   ++  R LD R Y+  V +           DE         +HEF+   +  F   W ES P + MAFP IF  +K  +  RF  L +  +
Sbjct:    3 AALRVTKLAQAHLSIWTRFFRALTNFFFGVFFGQTELERIV---AKPADDVRS-----MLVRLRTSIALDDSLKDTQMAIFGFKPFETDVTLAALARTKKIDLSKSLIAEANLRQSFKTFLAVNNVYAKVIALKDESYDSTNDAHEAMLEELWRNLKPDVRRTGGRHTKEWGEIGFQ-GTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSLSALVHSNHPTQWYPFAITGINITNFLVELINDRLLDARFYDKDVHI-----------DE---------LHEFFCQVFTMFDALWVESNPTDLMAFPTIFNHLK--ATIRFELLEQSFF 300
[Close]
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: D7FIA1_ECTSI (Similar to ELMO domain-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA1_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.330e-36
Identity = 84/185 (45.41%), Postives = 117/185 (63.24%), Query Frame = 3 
Query:   63 MSIVKKGKISYQAFLRMLRRICKFLVRQLTTKGELHRAVLRRTRTASGRRSGLSAQLVADIAKSLARSS--QLEEVKSVVFGSKPFAVDDVLKAIICVKKISDVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRRED-WGEIGFQNGLVPESDFRGMGMLG 608
            MS+ KKG+ + +AF R++RRI K+L+R+LT + E+ R +         R  G S++LV  IA+S+ARSS  ++E VK  VFG  PF V      ++  K I D +    L W LQ+L+ VN +H KV  LQ   YD + P HVALL++LW +L+P  RR + W  +GFQNG  PE+DFRGMG+LG
Sbjct:    1 MSLAKKGRKAVRAFTRLMRRIVKWLLRKLTAQSEIGRIL---------RSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHK-PRLTWCLQVLNIVNIIHEKVESLQHTNYDPDEPTHVALLETLWTSLQPDARRTNGWAPLGFQNGDKPETDFRGMGLLG 175
[Close]
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: A0A0P1ACK8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACK8_PLAHL)

HSP 1 Score: 157 bits (398), Expect = 2.440e-36
Identity = 93/246 (37.80%), Postives = 139/246 (56.50%), Query Frame = 3 
Query:  255 LARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKI--SDVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRR------EDWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIKD 968
            LA S ++ +  + VF ++PF V+  L  +     +  SD  ++A +   LQ  + VN ++ +V  L+ + Y   N EH  LL+ LW  LKP  RR      ++WGEIGFQ G  P SDFRGMG+L L QL HF++ +  E+   L +S HP R++PFA  GINVTAF   +++ R LD  +Y          +LS    D+ +  AG+  +H+FY   +  F++ W +S P + MAFP IF ++KD
Sbjct:   63 LALSKRMVQTCNAVFDNEPFPVEKTLHDVATRASLDKSDTTLMANVRSCLQRCNFVNRIYDQVYALKNEAYSSSNSEHEELLEQLWSNLKPDVRRLGGRITKEWGEIGFQ-GTDPMSDFRGMGILSLVQLNHFTKTYKIESQRALEESNHPTRWYPFAVTGINVTAFVVELIDNRLLDVEIY----------RLSTGGEDDNV-DAGIQQLHDFYATTFTRFNKLWVDSNPRDVMAFPSIFQSLKD 296
[Close]
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: F0WBU8_9STRA (Uncharacterized protein AlNc14C53G4139 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBU8_9STRA)

HSP 1 Score: 147 bits (372), Expect = 6.350e-36
Identity = 93/246 (37.80%), Postives = 137/246 (55.69%), Query Frame = 3 
Query:  255 LARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKISDVNV---VAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRR------EDWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIK 965
            LA S  L      +F  K   VD V + I     I   N+       GW L     VN+V+ K+  L+ + Y   N  H  +L+ LW  LKP TRR      ++W EIGFQ G+ P +DFRGMG+L L QL++F+ K+  EA  +LT+S HP  ++PF+  GINVTAF   ++++R +D ++Y+          +S+ PS + + + GL  +HEFY   +  F++ W ES P++AMAFP IF  +K
Sbjct:   61 LALSEHLTAQCDQIFDLKTLKVDQVSEEIAVADGIDKNNIRLMQTLRGW-LHRCDYVNSVYQKLLALRDEPYASHNKVHERMLEELWTNLKPQTRRAHGRITKEWSEIGFQ-GMDPMTDFRGMGVLSLVQLLYFTSKYPVEAQALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDIKIYQY-------ADISD-PSRDVMDN-GLDAIHEFYCDVFTSFNKLWKESNPEDAMAFPSIFQALK 295
[Close]
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: K3X4G9_GLOUD (ELMO domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4G9_GLOUD)

HSP 1 Score: 150 bits (378), Expect = 1.560e-35
Identity = 91/276 (32.97%), Postives = 148/276 (53.62%), Query Frame = 3 
Query:  252 SLARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKIS----DVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRR------EDWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIKDRSNARFPRLVEDHYW*GSLFTGSLCVH 1049
            SLA S+ L ++ + VF  + F ++ +L  +I  K++S    + +++A +   L   + VN V+ +V  L+ + +D +N +H  +L+ LW  LKP  RR      ++WGEIGFQ G  P SDFRGMG+  L+QL+HF+  +  EA   L +S HP R++PF+  GIN+T+F   ++ +R +D +LY+          L    +D +    GL  +HE Y   +  F++ W +S P + MAFP IF  +K        +   +    G   TG   +H
Sbjct:   62 SLALSNALVKICNAVFDFEAFPMEAILTEMI--KRLSLDAKNTSLIANVRGCLDRCNYVNRVYNRVHALRDEAFDSKNAKHEEMLEQLWSNLKPNVRRSGGRITKEWGEIGFQ-GTDPMSDFRGMGIFSLYQLLHFTGNYPVEAQAALAESNHPTRWYPFSVTGINITSFIIELINERLVDFKLYKF-------ANLQRGTNDSSNEDDGLEALHELYSTIFTRFNKLWVDSNPRDVMAFPTIFNALKKTIRKELVKHSFNSSKMGGRTTGKKNLH 327
[Close]
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: A0A5D6XTB3_9STRA (ELMO domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB3_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.820e-35
Identity = 95/255 (37.25%), Postives = 139/255 (54.51%), Query Frame = 3 
Query:  225 AQLVADIAKSLARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKIS--DVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRR------EDWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIK 965
            A+ +A    SLA    L    + VF  + F VD  L A++    ++  D  ++A +   L   + VN V+ +  +L+ + Y   +  H ALL+ LW  LKP  RR      ++WGEIGFQ G  P+SDFRGMG+L L QLVHFS K+  EA   L +S HP R++PF+  GIN+T F   ++ +R +D +LY +     PA       + E     G+A +HE Y   +  F++ W +S P + MAFP IF T+K
Sbjct:  531 AERMARFRTSLALDRALVSTCNAVFDFEEFPVDATLSAMVTKAALNPQDSTLMAGVRACLHRCNFVNRVYARTHQLRDEAYSSVDDRHEALLEQLWDNLKPNVRRSGGRITKEWGEIGFQ-GTDPKSDFRGMGILSLQQLVHFSVKYPVEAHAALAESNHPTRWYPFSVTGINITGFMIELINERLVDVKLYALANAQDPAA------AHEQATEQGVAALHELYCTLFTRFNKLWVDSNPRDVMAFPTIFQTLK 778
[Close]
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Match: A0A482SNR3_9ARCH (ELMO domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNR3_9ARCH)

HSP 1 Score: 141 bits (356), Expect = 9.340e-34
Identity = 96/268 (35.82%), Postives = 142/268 (52.99%), Query Frame = 3 
Query:  222 SAQLVADIAKSLARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKISDVN--VVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRALKPGTRRE------DWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILVLTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVL--VQLMPAGKLSESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTIKDRSNARFPRL 995
            SA +  + A+SL +S QL +   +VF  +   +      I+  K IS  N  ++A +   LQ +  +N     + +L+   Y   +PEHVALL+SLWR LKP   R+      +WGE+GFQ G  P +DFRGMG+LGL QLV+FSEK    AI +L+QS +  +YFP+AA GINVTA    M         + E +  + L  + +  E   D+    A L  +H  Y   ++   + W +S   + MAFP +F   K+   A +P+L
Sbjct:   43 SASMTEEFARSLKKSRQLVKYSKIVFRWEAVPIHSFTTGIMQAKGISIENSLLLANIRTCLQHVHMINMAIQHLQKLKSTIYSDNDPEHVALLESLWRNLKPHVTRQGGRITAEWGEVGFQ-GRDPATDFRGMGLLGLIQLVYFSEKMPELAISLLSQSQYDHQYFPYAATGINVTAVVVDMTLLGCFHHNILEEIDKIILHDSSQNIEREVDQKTIQAILNIIHAKYCVLFLRLGKTWLDSNSKDLMAFPKVFKGFKEDVLALYPKL 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54.12831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JID1_9PHAE4.550e-9452.53ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8J5J2E0_9STRA5.630e-3937.80Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A024G872_9STRA8.360e-3938.62ELMO domain-containing protein n=1 Tax=Albugo cand... [more]
T0QIL4_SAPDV7.500e-3733.13ELMO domain-containing protein n=3 Tax=Saprolegnia... [more]
D7FIA1_ECTSI2.330e-3645.41Similar to ELMO domain-containing protein 1 n=1 Ta... [more]
A0A0P1ACK8_PLAHL2.440e-3637.80Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
F0WBU8_9STRA6.350e-3637.80Uncharacterized protein AlNc14C53G4139 n=1 Tax=Alb... [more]
K3X4G9_GLOUD1.560e-3532.97ELMO domain-containing protein n=1 Tax=Globisporan... [more]
A0A5D6XTB3_9STRA3.820e-3537.25ELMO domain-containing protein n=1 Tax=Pythium bra... [more]
A0A482SNR3_9ARCH9.340e-3435.82ELMO domain-containing protein n=1 Tax=archaeon Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54contigH-paniculata_contig54:7909..13132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue7.8e-36
Seed eggNOG ortholog4792.ETI32227
KEGG koko:K14821
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.ELMO/CED-12 family
EggNOG OGs3QE7T@4776,KOG2998@1,KOG2998@2759
Ec32 ortholog descriptionsimilar to ELMO domain-containing protein 1
Ec32 orthologEc-11_001130.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons5
Model size2090
Cds size954
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.818313-UTR-H-paniculata_contig54:7908..89821622930552.818313-UTR-H-paniculata_contig54:7908..8982Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54 7909..8982 -
1691481345.1491416-UTR-H-paniculata_contig54:7908..89821691481345.1491416-UTR-H-paniculata_contig54:7908..8982Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54 7909..8982 -
1622930552.919327-UTR-H-paniculata_contig54:13070..131321622930552.919327-UTR-H-paniculata_contig54:13070..13132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54 13071..13132 -
1691481345.2067528-UTR-H-paniculata_contig54:13070..131321691481345.2067528-UTR-H-paniculata_contig54:13070..13132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54 13071..13132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.8382826-CDS-H-paniculata_contig54:8982..91221622930552.8382826-CDS-H-paniculata_contig54:8982..9122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 8983..9122 -
1691481345.1619031-CDS-H-paniculata_contig54:8982..91221691481345.1619031-CDS-H-paniculata_contig54:8982..9122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 8983..9122 -
1622930552.8531892-CDS-H-paniculata_contig54:9288..94531622930552.8531892-CDS-H-paniculata_contig54:9288..9453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 9289..9453 -
1691481345.172241-CDS-H-paniculata_contig54:9288..94531691481345.172241-CDS-H-paniculata_contig54:9288..9453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 9289..9453 -
1622930552.8705285-CDS-H-paniculata_contig54:9723..98281622930552.8705285-CDS-H-paniculata_contig54:9723..9828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 9724..9828 -
1691481345.1798868-CDS-H-paniculata_contig54:9723..98281691481345.1798868-CDS-H-paniculata_contig54:9723..9828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 9724..9828 -
1622930552.8864138-CDS-H-paniculata_contig54:11945..121501622930552.8864138-CDS-H-paniculata_contig54:11945..12150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 11946..12150 -
1691481345.1910248-CDS-H-paniculata_contig54:11945..121501691481345.1910248-CDS-H-paniculata_contig54:11945..12150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 11946..12150 -
1622930552.900102-CDS-H-paniculata_contig54:12731..130701622930552.900102-CDS-H-paniculata_contig54:12731..13070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 12732..13070 -
1691481345.1990502-CDS-H-paniculata_contig54:12731..130701691481345.1990502-CDS-H-paniculata_contig54:12731..13070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 12732..13070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54.12831.1prot_H-paniculata_contig54.12831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54 8983..13070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54.12831.1

>prot_H-paniculata_contig54.12831.1 ID=prot_H-paniculata_contig54.12831.1|Name=mRNA_H-paniculata_contig54.12831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
MSIVKKGKISYQAFLRMLRRICKFLVRQLTTKGELHRAVLRRTRTASGRR
SGLSAQLVADIAKSLARSSQLEEVKSVVFGSKPFAVDDVLKAIICVKKIS
DVNVVAALGWSLQILSTVNAVHMKVARLQQQQYDKENPEHVALLDSLWRA
LKPGTRREDWGEIGFQNGLVPESDFRGMGMLGLHQLVHFSEKHNHEAILV
LTQSYHPQRYFPFAAAGINVTAFTSGMLEQRRLDERLYEVLVQLMPAGKL
SESPSDEALASAGLADVHEFYGAEYVEFSRFWHESLPDNAMAFPGIFGTI
KDRSNARFPRLVEDHYW*
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mRNA from alignment at H-paniculata_contig54:7909..13132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54.12831.1 ID=mRNA_H-paniculata_contig54.12831.1|Name=mRNA_H-paniculata_contig54.12831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5224bp|location=Sequence derived from alignment at H-paniculata_contig54:7909..13132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAATGCCATACTTGTAGGACGAGAGTTGCTAGTCAGCAGGTGAGTGCCT
TCTACATCGGCCATGTCCATCGTAAAGAAGGGAAAAATCTCGTATCAAGC
ATTCCTTCGGATGCTGCGCCGAATTTGTAAGTTTCTTGTGAGACAATTGA
CAACTAAGGGAGAACTTCACCGCGCGGTACTTCGTAGAACACGAACGGCA
TCGGGGCGCCGGAGTGGCTTATCGGCCCAACTTGTGGCTGACATTGCCAA
GTCTCTTGCCCGGAGTTCGCAGTTGGAGGAAGTGAAGAGTGTCGTTTTCG
GGAGCAAACCCTTTGCAGTGGACGATGTGCTGAAGGCAATAATTTGCGTC
AAGAAAATCTCAGACGTCAATGTTGTCGCAGCACTGGGTTGGTCATTGCA
GGTGAGCTTTCGTTTCCTTTCTGGTAAAATGACTGTCCTGGAGATGACTA
TAGTGGAGACAATTGTATCTGTGCAGTGTACGAACAGCAGGTAGTATAGA
GACTTGATTATTGATTATAAACATGAGTTTGACTAACTTGTCGTTCTATG
TATCAGTAAACTACCGCTTTGTCGTATTACAGCAAAACATAGTACTGTAC
TGCGCTGCACCAGCAAGATGATCGAGTGGCAAGTGCTTTCTCGCGCTCCC
TCCCTACACCCAATACTTTTCGCCATGGGAGTTATGTCATTGATTTTCAC
ATTCCCATCATAGCAGTCAAGTTCCGAGTTTGTCTTTCGAAGCAAAAAAC
GTTTGTCACAGGAAATTAAGAAGTTTCGTGGCCCCTGGCAATTTGTAAAC
ATACGTACGTGTGGCTTCCAACATTTTCAAGAGCATCATTCGTTCCATGT
TGCGGGTGGTAGTAGCTCCGTGAATTGAGTCCAGGACTTGTCCTTTGGCC
GCTGAGGGAGTTTACATTGATGGTGACTTCAATGTAGAAGAAATGAAGTG
TATTGTCGCTGTTGCCTCTTGTCTGCTGGCAGATTTTGTCCACGGTGAAC
GCTGTACACATGAAGGTCGCCCGTCTTCAACAACAGCAATACGACAAGGA
GAATCCTGAGCACGTTGCTCTCTTGGATTCCCTCTGGAGGGCGCTTAAGC
CGGGGACGCGCAGGGAAGATTGGGGAGAAATTGGTTTTCAAAACGGTCTA
GTCCCAGAGTCCGACTTCCGCGGCATGGGCATGCTTGGTGAGTTTGCAAA
TGTAGATGCAAACTCATTGTTTTGGTACGCTGGTTTGACGTCATGCGTCC
ACGGCTACTCCAATTCTATTGCCTAACATGGATTGACGAAAATTCCTGGT
CTTTTTTCATTTCCAGGATATTAGGCGAGCAGTGGCACCGGGAATGTCAC
ATCTTTGAGGATGCTTGCATTGGTGTCATTTATGGAGATGACTTTGAGCA
TGGTGTGGTCGGGGTTTGACCTCGTGGAGACGTCGCCGCGTTTGTTGCTC
CGCAGTATGCCTGTGGACAACGGGAAAAAAGCCTCGTTTGGAATGCAGAC
GGTTTCGAAGAGTTTATTTGGTATGGCAACGCAACCTGAGTGACTGATTC
CTTGAGGAGGGCGAATGAGCACCCAGTCTGATGTATTTGCCTCTGGTCCC
TTCCAGCAACTCTCTATATGGGACGCATTCACAATCATCCACCACCACCA
CCACCTATATTCATGCATACACACATGTAAAGAATGTTTCCCGATTTATT
TTCAGATATTCTCCCACAGAGACTGTCTCTTTGTCGGGACAATGATTTTC
ACGACCTTGTCGCGTCGACGTGGTTCGTTAGGAATATTCTGGTGAAGCAT
GTGGTTGCCCATGGGATTTTGCTCCGCTTGCCTATGGCTCGTGCGCATGC
GCTTGCGCCGCGAGGTGCACTGTTGCATTTATTGTTCAGTTGTCTTTCCT
TCGTGGTCGCCGCCAGCCACCACTGGTAGAACACGACTACAATAGAGTTT
GAATGTGAATTTTATAGTTTGACGAGGTTGGAGGCAGGATATGTATTAGT
CCAATCAGCATGCCGAGGAGCTTTTGTTTGAGGGGGAAGGTGTCGGTCGT
TCACGAGGCAAATGTGGGGGGACGGATTTCAACAGCCCCTCCTTCTCGCC
TCTCAGATTTTTTATTGCGAGGATATGCTCTCCACTCCACTGTAAAGCGG
GTGGGTAGTTGACGTGATGGTAAATCATCCCTTCGATCTTTTTGATCGTC
GAGCTTCTCCAACCGATGCCGGTGTTTCGTAGTGCTCCCGCAACCACCGA
AATTACAGCAACCGAGCACCTCTGTTTTCCGGTATTTGCGAATGGCGTTG
ACTTCTCCACGCCACTGTGACGCGGGTAGGTGGTGCATGTAATAGGGAAT
CTTTCAGTTGATTTTTTTTCTTGTTGAGCTTCTCCAATGAATGCCGGTGT
TTCGTAGTGCTCCCGCAACCACCGAAATTACAGCAACCGAGTATGTACAT
TCGTCGTTATTTGCGAACGGCGTGAACTTGGATGACATGATGGTACCGTA
GTATTCGAAAGGACACGCGCTTCAATACTGGCGCTTTAACAGTTGCGCAG
CGGACTCGGAGGAGTAAGGCAAGTCCCCTACATTTTATAGTTGTACCACA
CAATATGATTTTCGCACCTGCGAGCTCGGCGGCTCCATAATAACAGCGAT
AACGAATGTATGCCATAGCTAGGTGGTCGTGAGCCACCATGACCCAGAAA
TTATCATTGTATTCCTTATGGATTTTGTTCCAAAATATGCAAAACAGTAT
CTTGAATATATCCACATGATTGTACACGGCGATCGTTCCTGAAAGCACAT
AGAAGCACGTGCAGAGACGTGTGGTATAGACCGAAAACGTGATAATCGAA
ACGGTGCACTGTGTTGCATACACGGGTATAGCTCCCTTGTTTGTTTTCAT
GTGTTGGAGGCTTGTGCAATGTCGAGAGCTTTTTATCCACAGTATGTCCG
CTCCCTATTCACTTGTAAGTTTCATAGTTACCGTTGGTGACGTGAGACAA
GACAATCCACATTTGTTGTTAATAGGATCAGTTGGATGCCAACTTTCCGC
TGGTTGCAGCAATTACAACGAAAATGAAAACCCAAGTGCTTCTGGTGATA
TCCCAGTCAGTCGGTTAGTGGTTTTGGCGAGAAGGACTACTCTTCAAATG
TAGCCGCGTTGCCCTTGACCTAGTACGCAATATGCAGTAGTGGCCCAGGT
CGTTGCGCCTGTAAGTGCATTGACCCGCTTTTTTTTTTTCTTAGCGCCAC
GTGAAGTTTGTCTGACCGCCCTTATGTTCTGCAAATTATGTTTTGTATCT
TCAGGCCTTCACCAGCTGGTGCACTTTTCGGAGAAGCATAATCATGAGGC
GATACTTGTCCTGACGCAGTCTTACCATCCACAGCGATACTTCCCATTTG
CTGCCGCAGGTAAAAATATGTTTGGGTGGTCAGCTGCTCCTCACTTCTTC
GAGATTGTTTCACTTACCTATATCGATATAGTGATGTGGTTTTATCGACA
TTTGGCGATAACCGCCACGGACAATGTTGGGTGCTAGAGTGTGGATCATG
CCTCGTTTTTGTTGGTTCTGGTTATACAGTTCGCCTATTGGATGTGGGCG
GGATGAGTGAAATACGTCACTCCTTTTCAGTCCCATCCACTCCTTTCTCA
TTCAATTGCATATATCGATGGATCGCAAGGTATAAATGTGACAGCCTTCA
CTTCTGGTATGCTTGAGCAACGGCGTCTGGATGAACGTTTGTATGAGGTG
CTTGTCCAACTGATGCCGGCGGGAAAACTTTCTGAATCTCCAAGCGACGA
GGCACTTGCGTCCGCTGGACTAGCCGACGTTCACGAATTTTACGGTAAGT
GAGAGCATGGAACAGCGGTAAACAGCTGGCAAACACGAGTCGTAGGACCA
CCTTTTCGTACCATGCTGATGGTAAGCCTTTTGTTGGATCGTCCATTATA
TCGTGTGGTGTGTGTCACACCGTAAGCCTTGAACCTTTTTGTTGCTCGGT
TTCTATACAGGAGCCGAATACGTGGAATTCTCCCGGTTTTGGCATGAGAG
TCTTCCGGATAATGCCATGGCTTTTCCAGGAATATTCGGAACAATCAAGG
ATCGCTCCAATGCCAGGTTCCCGCGTCTCGTGGAAGATCACTACTGGTAG
GGTAGCCTATTTACCGGGAGTTTATGCGTACATATTCTTGAAATTAGATC
CTAAATTTGATTGCGCTTTGAATTCATTCAAAACCTGTGCAGCCGTCCAT
CTTCTTGGACGTTCTGGAGGTTTATTAGCAAACCGTAATTTCGCGTTAGT
GGGCACCGGAGATATCCAGCTCAGTTTTTTTCGAACGTAGCTTGGGTCGA
TGGTTTTGCCAAGTTGCTGTTTTCTCATGCGAATTTTTTAGTGTACTACG
CGGTGTTCTATAGCTGATGAGAAGTAGATGTCAATCAATCCTTCGAAGCT
CGGTATGGTGAGCAATTAATGGTCGAAAAGGAGTCGTCTAAACTTCCTGT
ACATAAAAAAATGTTCTGTAGTTCTGGTAGGTATCATGGATCCTATCGGG
ACTAAGGAACCCAGCTACTCCCAAGGCAGTTTCGTGTATTGTTGTAAATA
TGTCCCAACATTTTTACTTGCAAGCGTTATGTATCCTCATACTGTTGAAC
ACTGTAGCGACTGCGTAGCTTTCTCCTGAAGTGTTGTGGTTTGTGTCTAG
CTAGTTGCTCAGGGCGTTGACCCTGGCTCGTTTGAATAGGATTTTTTTGT
TTTGAGACATGACCGTAGAAACCTGATCTGACAAGATAAGTGACGTTCCA
CGTAATTGAGATATTGTGCAGCTCAACATGGCCAACTACTGTACTTTCAT
GTACACCTTCATTCCGAAGATATAAAACCTGCGGCTGCATGCCATGGAAC
TGAAGCTTTTAAGGTGTGGAAGAAATGGTCCGTGTCCACGATCCCCTTGG
TCCAGTCCACTTGGTGTTTTCTCGGGGTCAATCGTTCATCATCTCGTAGG
ATTAAGCGACATCAAAGCATTTACGTCGGTGGGGTGGTTGAATTTAGAGG
TCAATACCAGGGAGTGAATAGGTGTTATTTCGTACCATGACGCAGGTATT
CGACGCTTGCGGTCAAAATGAGGACTTGATAAAGTGATGTGACATTTCTC
TCGTCGGCTTGTTAGAAAACTGCACGGTGATTGATACAGCAGGGCAATTA
TACATTTTACCAGTCATACGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig54:7909..13132-

>mRNA_H-paniculata_contig54.12831.1 ID=mRNA_H-paniculata_contig54.12831.1|Name=mRNA_H-paniculata_contig54.12831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig54:7909..13132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCATCGTAAAGAAGGGAAAAATCTCGTATCAAGCATTCCTTCGGAT
GCTGCGCCGAATTTGTAAGTTTCTTGTGAGACAATTGACAACTAAGGGAG
AACTTCACCGCGCGGTACTTCGTAGAACACGAACGGCATCGGGGCGCCGG
AGTGGCTTATCGGCCCAACTTGTGGCTGACATTGCCAAGTCTCTTGCCCG
GAGTTCGCAGTTGGAGGAAGTGAAGAGTGTCGTTTTCGGGAGCAAACCCT
TTGCAGTGGACGATGTGCTGAAGGCAATAATTTGCGTCAAGAAAATCTCA
GACGTCAATGTTGTCGCAGCACTGGGTTGGTCATTGCAGATGTCCATCGT
AAAGAAGGGAAAAATCTCGTATCAAGCATTCCTTCGGATGCTGCGCCGAA
TTTGTAAGTTTCTTGTGAGACAATTGACAACTAAGGGAGAACTTCACCGC
GCGGTACTTCGTAGAACACGAACGGCATCGGGGCGCCGGAGTGGCTTATC
GGCCCAACTTGTGGCTGACATTGCCAAGTCTCTTGCCCGGAGTTCGCAGT
TGGAGGAAGTGAAGAGTGTCGTTTTCGGGAGCAAACCCTTTGCAGTGGAC
GATGTGCTGAAGGCAATAATTTGCGTCAAGAAAATCTCAGACGTCAATGT
TGTCGCAGCACTGGGTTGGTCATTGCAGATTTTGTCCACGGTGAACGCTG
TACACATGAAGGTCGCCCGTCTTCAACAACAGCAATACGACAAGGAGAAT
CCTGAGCACGTTGCTCTCTTGGATTCCCTCTGGAGGGCGCTTAAGCCGGG
GACGCGCAGGGAAGATTGGGGAGAAATTGGTTTTCAAAACGGTCTAGTCC
CAGAGTCCGACTTCCGCGGCATGGGCATGCTTGATTTTGTCCACGGTGAA
CGCTGTACACATGAAGGTCGCCCGTCTTCAACAACAGCAATACGACAAGG
AGAATCCTGAGCACGTTGCTCTCTTGGATTCCCTCTGGAGGGCGCTTAAG
CCGGGGACGCGCAGGGAAGATTGGGGAGAAATTGGTTTTCAAAACGGTCT
AGTCCCAGAGTCCGACTTCCGCGGCATGGGCATGCTTGGCCTTCACCAGC
TGGTGCACTTTTCGGAGAAGCATAATCATGAGGCGATACTTGTCCTGACG
CAGTCTTACCATCCACAGCGATACTTCCCATTTGCTGCCGCAGGCCTTCA
CCAGCTGGTGCACTTTTCGGAGAAGCATAATCATGAGGCGATACTTGTCC
TGACGCAGTCTTACCATCCACAGCGATACTTCCCATTTGCTGCCGCAGGT
ATAAATGTGACAGCCTTCACTTCTGGTATGCTTGAGCAACGGCGTCTGGA
TGAACGTTTGTATGAGGTGCTTGTCCAACTGATGCCGGCGGGAAAACTTT
CTGAATCTCCAAGCGACGAGGCACTTGCGTCCGCTGGACTAGCCGACGTT
CACGAATTTTACGGTATAAATGTGACAGCCTTCACTTCTGGTATGCTTGA
GCAACGGCGTCTGGATGAACGTTTGTATGAGGTGCTTGTCCAACTGATGC
CGGCGGGAAAACTTTCTGAATCTCCAAGCGACGAGGCACTTGCGTCCGCT
GGACTAGCCGACGTTCACGAATTTTACGGAGCCGAATACGTGGAATTCTC
CCGGTTTTGGCATGAGAGTCTTCCGGATAATGCCATGGCTTTTCCAGGAA
TATTCGGAACAATCAAGGATCGCTCCAATGCCAGGTTCCCGCGTCTCGTG
GAAGATCACTACTGGTAGGAGCCGAATACGTGGAATTCTCCCGGTTTTGG
CATGAGAGTCTTCCGGATAATGCCATGGCTTTTCCAGGAATATTCGGAAC
AATCAAGGATCGCTCCAATGCCAGGTTCCCGCGTCTCGTGGAAGATCACT
ACTGGTAG
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