mRNA_H-paniculata_contig53995.12827.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53995.12827.1
Unique NamemRNA_H-paniculata_contig53995.12827.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53995.12827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53995contigH-paniculata_contig53995:42..350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.3968434-UTR-H-paniculata_contig53995:41..441622930552.3968434-UTR-H-paniculata_contig53995:41..44Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53995 42..44 +
1691481344.96415-UTR-H-paniculata_contig53995:41..441691481344.96415-UTR-H-paniculata_contig53995:41..44Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53995 42..44 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.4135802-CDS-H-paniculata_contig53995:44..3501622930552.4135802-CDS-H-paniculata_contig53995:44..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53995 45..350 +
1691481344.9732244-CDS-H-paniculata_contig53995:44..3501691481344.9732244-CDS-H-paniculata_contig53995:44..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53995 45..350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53995.12827.1prot_H-paniculata_contig53995.12827.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53995 45..350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53995.12827.1

>prot_H-paniculata_contig53995.12827.1 ID=prot_H-paniculata_contig53995.12827.1|Name=mRNA_H-paniculata_contig53995.12827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MRPYVDASLIVGKDVQAVFAAAQHQGEFQISNILDISESRDKKGEYILLV
EWVGLGAEERSWEPVAVIHEDVPQYLRRKLKKTRLDASTWATLKAKYNIV
L*
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mRNA from alignment at H-paniculata_contig53995:42..350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53995.12827.1 ID=mRNA_H-paniculata_contig53995.12827.1|Name=mRNA_H-paniculata_contig53995.12827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig53995:42..350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATGCGGCCGTACGTTGACGCTTCCCTGATCGTGGGGAAGGACGTTCA
GGCCGTGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATCTCCAACA
TCCTCGACATCAGCGAGAGCCGTGACAAGAAGGGGGAGTATATATTGCTC
GTGGAATGGGTGGGGCTGGGTGCTGAAGAGCGCAGCTGGGAGCCGGTGGC
CGTCATCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGAAGA
CGCGGCTGGATGCGAGCACCTGGGCCACCCTCAAGGCAAAGTACAACATT
GTATTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig53995:42..350+

>mRNA_H-paniculata_contig53995.12827.1 ID=mRNA_H-paniculata_contig53995.12827.1|Name=mRNA_H-paniculata_contig53995.12827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig53995:42..350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCCGTACGTTGACGCTTCCCTGATCGTGGGGAAGGACGTTCAGGC
CGTGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATCTCCAACATCC
TCGACATCAGCGAGAGCCGTGACAAGAAGGGGGAGTATATATTGCTCGTG
GAATGGGTGGGGCTGGGTGCTGAAGAGCGCAGCTGGGAGCCGGTGGCCGT
CATCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGAAGACGC
GGCTGGATGCGAGCACCTGGGCCACCCTCAAGGCAAAGTACAACATTGTA
TTGTAGATGCGGCCGTACGTTGACGCTTCCCTGATCGTGGGGAAGGACGT
TCAGGCCGTGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATCTCCA
ACATCCTCGACATCAGCGAGAGCCGTGACAAGAAGGGGGAGTATATATTG
CTCGTGGAATGGGTGGGGCTGGGTGCTGAAGAGCGCAGCTGGGAGCCGGT
GGCCGTCATCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGA
AGACGCGGCTGGATGCGAGCACCTGGGCCACCCTCAAGGCAAAGTACAAC
ATTGTATTGTAG
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