mRNA_H-paniculata_contig53968.12822.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53968.12822.1
Unique NamemRNA_H-paniculata_contig53968.12822.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53968.12822.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 50.1 bits (118), Expect = 4.710e-5
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   46 NMWVSDSGASNHMTNNLAKMYDLRKPVAGEDVVILGDGSILVVDLVGKLDLILHSTTDVPATLEVSYLPELNFNLFSLHK 285
            N+W++DSGASNH+T N++ +     P  G + + +GDG+ L +   G    ILH++      L V + P++  NL S+HK
Sbjct:   23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53968.12822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5E4GCQ9_PRUDU4.710e-536.25PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53968contigH-paniculata_contig53968:10..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.1281078-CDS-H-paniculata_contig53968:9..2971622930552.1281078-CDS-H-paniculata_contig53968:9..297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53968 10..297 -
1691481344.9048743-CDS-H-paniculata_contig53968:9..2971691481344.9048743-CDS-H-paniculata_contig53968:9..297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53968 10..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53968.12822.1prot_H-paniculata_contig53968.12822.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53968 10..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53968.12822.1

>prot_H-paniculata_contig53968.12822.1 ID=prot_H-paniculata_contig53968.12822.1|Name=mRNA_H-paniculata_contig53968.12822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
LPVALTTQNPNINNGNMWVSDSGASNHMTNNLAKMYDLRKPVAGEDVVIL
GDGSILVVDLVGKLDLILHSTTDVPATLEVSYLPELNFNLFSLHKI
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mRNA from alignment at H-paniculata_contig53968:10..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53968.12822.1 ID=mRNA_H-paniculata_contig53968.12822.1|Name=mRNA_H-paniculata_contig53968.12822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig53968:10..297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCTGTAGCCTTGACGACTCAAAATCCAAATATTAACAATGGCAATAT
GTGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACAATCTTGCAA
AAATGTATGACCTTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATATTG
GGGGATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAGCTAGATTTAAT
TCTTCACTCTACTACCGACGTGCCTGCCACACTTGAAGTATCATACTTAC
CGGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig53968:10..297-

>mRNA_H-paniculata_contig53968.12822.1 ID=mRNA_H-paniculata_contig53968.12822.1|Name=mRNA_H-paniculata_contig53968.12822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig53968:10..297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCTGTAGCCTTGACGACTCAAAATCCAAATATTAACAATGGCAATAT
GTGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACAATCTTGCAA
AAATGTATGACCTTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATATTG
GGGGATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAGCTAGATTTAAT
TCTTCACTCTACTACCGACGTGCCTGCCACACTTGAAGTATCATACTTAC
CGGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATCTTGCCTGTAGCC
TTGACGACTCAAAATCCAAATATTAACAATGGCAATATGTGGGTGTCTGA
TTCTGGTGCAAGTAACCACATGACGAACAATCTTGCAAAAATGTATGACC
TTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATATTGGGGGATGGATCG
ATTCTGGTGGTAGATTTGGTGGGAAAGCTAGATTTAATTCTTCACTCTAC
TACCGACGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGTTGAACT
TCAACCTTTTTTCCCTCCACAAAATC
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