mRNA_H-paniculata_contig5396.12821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5396.12821.1
Unique NamemRNA_H-paniculata_contig5396.12821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5396.12821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5396contigH-paniculata_contig5396:9042..11602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.0111704-CDS-H-paniculata_contig5396:9041..92231622930552.0111704-CDS-H-paniculata_contig5396:9041..9223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5396 9042..9223 +
1691481344.8676438-CDS-H-paniculata_contig5396:9041..92231691481344.8676438-CDS-H-paniculata_contig5396:9041..9223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5396 9042..9223 +
1622930552.0255015-CDS-H-paniculata_contig5396:11277..116021622930552.0255015-CDS-H-paniculata_contig5396:11277..11602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5396 11278..11602 +
1691481344.8809328-CDS-H-paniculata_contig5396:11277..116021691481344.8809328-CDS-H-paniculata_contig5396:11277..11602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5396 11278..11602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5396.12821.1prot_H-paniculata_contig5396.12821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5396 9042..11602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5396.12821.1

>prot_H-paniculata_contig5396.12821.1 ID=prot_H-paniculata_contig5396.12821.1|Name=mRNA_H-paniculata_contig5396.12821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
FGNLSDLSRPVGARTRNLPMDWAPVEEKESEEEAPEGQKRAATDFDRVES
GMTEESIVSIVEVDVLSSNGTVGASVSGRPAQLGTSVKGAPNANKTDTPK
STAWKGVAEPPSRPQDAEATNASTSDSNEGAGRLLAAAAAAAAATATAAP
DGVGVGVGQDEKEEEKEKE
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mRNA from alignment at H-paniculata_contig5396:9042..11602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5396.12821.1 ID=mRNA_H-paniculata_contig5396.12821.1|Name=mRNA_H-paniculata_contig5396.12821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2561bp|location=Sequence derived from alignment at H-paniculata_contig5396:9042..11602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGGAATCTGTCTGACTTGTCGAGGCCGGTGGGGGCGAGGACTCGAAA
CTTACCCATGGATTGGGCGCCCGTAGAGGAGAAGGAAAGCGAAGAGGAGG
CACCGGAGGGGCAGAAGCGAGCCGCTACAGATTTTGATCGTGTCGAGTCG
GGCATGACGGAGGAGTCAATTGTATCTATCGTGTGAGTTATCGTTATTAT
AATCCAATGTTGCTGTCGTTGGTGATGATGGTGGTGGTGGTGACGTTGAT
CGGAGAAATAACAGTACCCTATTGAACGTTAACCCCTCTGGTGCCACGGT
TGCAAACGGACCACAGACGAACCATGCAAAATATGTTTGAAATTGGGTCT
GGCCCTACATAACGACGCCTGTATGCAGATACTGGAAGATGTAACCCCGC
TGCCAGGTATATACAATAATTGCCGTATATTTGTATGGTCGAGAGTCTGA
CCGCCTGAAATACAGACAGGTGTTGGAGAAGAGAAGGAGAGAGGCATGGA
GTCATCGGTTCCATGTAAATACAGCCCAACCCTTTTTTGGTTGACTACTG
TTACGGTTCAGCGCAAAGAAATACAAGAAAAAAAAACAAAAAAACTTTAC
CGCAACGATGGTTCGTTTGTATTGCACGGGTGATTTTCCAATACCACACA
GATCCCCCCGCCAAGAGTCCTAGGCTGTCAACTCCGTATGCCGGACAGAA
CAGAATGGAACCGAAGAGTCAAATATACCAGCCTTAGTGTACAATTCTGG
AGCACTTTCTCGAGTAATTCGTGCTGTCATTTAGTCGGTATGGGGAAGCT
TTCTGGCTGCTCTGGTCGACCGCGAACCCTGTACCATCTTGGCCACAGAT
TTGTCCAGCGAAGAGGAGCTGATCTATGCAAAACACGGAAACTCTAGATT
TCAGGGTTTGATCTATCGGACGTGTGACATATTTGGAATAGTTTGGCGTG
GCGCCAGAAGGACCAAGGTAGCGTCAAGTAGAAATAAACTTGCGAGGCTA
ATAGCCAGCTCTACCAATATATTCCAATCGTGTCTACTACAGAATGACGT
AGTATTTGATCCGACGCCATATCTCGAGATCTACAACGAGAAATTTGACT
CGAATTTTTGCGTAGGCCTCGTCTACGCAAGGGCTAACACTTTTGTTCGA
GGTCATCGGCCAAAAATATGAATTCGGTGAAAATATGTTATTTAGAGGTC
TTGAATTTAATGCTAAGGATATATGAAGTTGAGCTGTGACTCGGCTAAAT
CTTGATCACTACGAGTGTGAAGTTCTTGGGAGGAGCGCAATCACAACTTG
AACAACTTTTCCATAGGGTACTACCTCCTTCCTCGGTTTCATGGGCATTT
CGTGACGAACAACGGTCGGCTGCCGTTCGTGGCTCATTGATTTTAAAGAC
GAGTGACTTCAAAGCGCGTCTTTTTTTGCCTCCGGTAAAGCCTCCTCACC
AGCCGGGGAGAGGGGGGGTATTGGGCTCGCGGCAAGCTGGTCACCTGGCG
CTTCCCTCGCACCAATACATTACCGGTGATGGATGGAGTTAGTATACTTT
GCCAACCGATCAGTATATTTTGACGTATATGAATAACCTGCACACGGCCC
TACTATTCGTAGGATGTTCAAGTATGAGATTTTTTCGTTTTTCCACTCGA
TTCTGGAATGTTCGTTACAGCGGGAATTTAATTTTGCCCGGCCGTTTTAT
GGCATGGTTGAAGCACATGGGATTTTTTTTTTTTTTTCGCTTTCCTAGCC
GGTGCGCGGGTGTCCATGTGATGTGGGAATTTGTCGGTCATGACATAAAA
AGACTTACAAACAAGGGTATTGGGAAGGTTTTCATTTGTAAGGCTAACAA
GAAGTACTTTAATCAAATAGAGTAAGATATAGTGGGGAAAATTCTACGAT
AGAGACACAGGTACTCAAATAATAAGCAGATCTTTTTCCTGATTTTGTTA
TCTCCTATTTTTTTATTTTTTTAGGAATCTCTTCGTTTGAATTACTCGTT
TTGTTGCGATATACTGACGCAGTTTCACCAGATCACCGTTCATCCTGCGA
CCGTGGATCTGAGAAATCGGTCTAATGTGGGAATAAAAATAATGATCATC
ATCCTGTACTGCTCGTTGCTGTGTCGCTTTTGCCTCGTTCTTGGTCGCTC
TTCTGTTTTGCATCTGCCCATCGTTTGTTCGTTCGTTCGTTCGATTGTTC
GTTCGTTCGATTCATCCATGAACTGTTACTAAATAGCGAGGTCGACGTGC
TGTCATCCAATGGGACAGTGGGTGCAAGCGTCAGCGGCAGGCCAGCCCAA
TTGGGCACGTCCGTGAAGGGGGCACCCAATGCCAACAAGACGGACACCCC
GAAATCCACGGCTTGGAAAGGGGTGGCAGAACCGCCAAGTCGCCCTCAAG
ACGCAGAGGCAACGAACGCTAGTACTAGTGATAGCAATGAGGGTGCGGGG
CGATTACTCGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTACTGCTGC
TCCTGATGGTGTCGGTGTTGGTGTTGGGCAGGATGAAAAAGAGGAGGAGA
AGGAGAAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5396:9042..11602+

>mRNA_H-paniculata_contig5396.12821.1 ID=mRNA_H-paniculata_contig5396.12821.1|Name=mRNA_H-paniculata_contig5396.12821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig5396:9042..11602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGGAATCTGTCTGACTTGTCGAGGCCGGTGGGGGCGAGGACTCGAAA
CTTACCCATGGATTGGGCGCCCGTAGAGGAGAAGGAAAGCGAAGAGGAGG
CACCGGAGGGGCAGAAGCGAGCCGCTACAGATTTTGATCGTGTCGAGTCG
GGCATGACGGAGGAGTCAATTGTATCTATCGTTTCGGGAATCTGTCTGAC
TTGTCGAGGCCGGTGGGGGCGAGGACTCGAAACTTACCCATGGATTGGGC
GCCCGTAGAGGAGAAGGAAAGCGAAGAGGAGGCACCGGAGGGGCAGAAGC
GAGCCGCTACAGATTTTGATCGTGTCGAGTCGGGCATGACGGAGGAGTCA
ATTGTATCTATCGTCGAGGTCGACGTGCTGTCATCCAATGGGACAGTGGG
TGCAAGCGTCAGCGGCAGGCCAGCCCAATTGGGCACGTCCGTGAAGGGGG
CACCCAATGCCAACAAGACGGACACCCCGAAATCCACGGCTTGGAAAGGG
GTGGCAGAACCGCCAAGTCGCCCTCAAGACGCAGAGGCAACGAACGCTAG
TACTAGTGATAGCAATGAGGGTGCGGGGCGATTACTCGCTGCTGCTGCTG
CTGCTGCTGCTGCTACTGCTACTGCTGCTCCTGATGGTGTCGGTGTTGGT
GTTGGGCAGGATGAAAAAGAGGAGGAGAAGGAGAAGGAGCGAGGTCGACG
TGCTGTCATCCAATGGGACAGTGGGTGCAAGCGTCAGCGGCAGGCCAGCC
CAATTGGGCACGTCCGTGAAGGGGGCACCCAATGCCAACAAGACGGACAC
CCCGAAATCCACGGCTTGGAAAGGGGTGGCAGAACCGCCAAGTCGCCCTC
AAGACGCAGAGGCAACGAACGCTAGTACTAGTGATAGCAATGAGGGTGCG
GGGCGATTACTCGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTACTGC
TGCTCCTGATGGTGTCGGTGTTGGTGTTGGGCAGGATGAAAAAGAGGAGG
AGAAGGAGAAGGAG
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