mRNA_H-paniculata_contig5392.12817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5392.12817.1 vs. uniprot
Match: D8LKF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF9_ECTSI) HSP 1 Score: 364 bits (934), Expect = 5.160e-114 Identity = 291/674 (43.18%), Postives = 353/674 (52.37%), Query Frame = 1
Query: 1 VAGTTRPSPEPQPATIDRWARGWIMSRSTKARGQDSLDR--MSDDGSXXXXXXXXXXXXXXXXSACALGTRSAQRESR----------HNQKVQQEAVPKPFPLGPELEEGQRDPPEGGNMPLDNQGRDRNGRGDSLSWSGEGG--------KSGEGVKKGDIGNAIKVGY----------RNRDTAGWFLRPDLGGREWTIDAAGELLVLDRPQGDTLPGTLVSASYAFRDVVDDCATTEVGGAG----GDAATDEWEARRTGMGGRGANKRSSISSCWARDTSRASVSRRASGRRISRRYS---RRGANNRFFALEPTLQPNLTTSLGRPGPGVSVCDGNSIKEGPEWPQDPNHMSWGEYRQRQRKTDSMSSLNAFGGNNNTDETDVSTLGFSLGSIQSAPAQIAQRETLSQNSAGGGSGCGGHNRGQNXXXXXXXXXXXXXXHSFTAFDNIDPLDGGVRVARATSSPPRNMQSARFGKGYRAPGPLSPLSMSVGDDGAGAGGXGAAGPEWIGDDDDSRDPHLQLLQEPEWKTGTQGQARKAGLLPKIKQHSRERPLTHERPNTRNPRDPPNVPARSQAHSSPKKIGGSGSQQPASWEGRQVTADDSDSIGGST--SFSSLPMSLMGWG--ADGAAIGRSGGMKSEHRRAE---GTITMNKPRELIAQGFLR 1890
+AGT PSPEP+ IDRWARGW+ SR T R D R SDDGS + A G SA R H+ ++++ PFPL PE+ E Q PP +P + R G GDS + G GG GEG ++ G + G R D L+ DLGGREWTID AGELL++DR QGD +P T+VSA Y FRDV D A E GG G D + R G G S S+ ++++ R+S+S R + R RR + FF LEPTLQPNL SL RPGPGVSV DG S+KEGP WPQDP HMS EYR+RQR+ D S GG D S+LGFSLGS+QSAPA L+ N+A GG GG XXXXXXXX S TAF++++P GG+RV +SPP G LSPL+ SVG G AGPE + S DPHL L+++P+W +G ++AG LPK+KQ SRERPLTHERP TRNPRDP NVPAR AH SPK S S + Q T DD GGST SF SLPMSL GWG G ++G+ GG+ R + G ITM KP+E+I QG LR
Sbjct: 1 MAGTLFPSPEPETPPIDRWARGWVASRRTTVRDWDRFPRGSSSDDGSEGGRSLRSVR-------STATGMTSAHRHGXXXXXHARHRPHSSSCKEDSSGVPFPLAPEVREDQSLPP---TIPGHSVRMSRKG-GDSRAKRGRGGHCAKRTGANRGEGGRRQGSGGESESGCLWDGGTDGSDRQEDDLDSRLK-DLGGREWTIDGAGELLIVDRVQGDAMPKTVVSALYNFRDVRDKLAGGENGGGGVXXXXXXXLDGGKRHRDGSGVGKTRGSISGSASFSKERKRSSLSLRRASRXXXXXXXXXXRRRGSGAFFELEPTLQPNLANSLDRPGPGVSVSDGGSLKEGPSWPQDPEHMSRSEYRERQRRQDLTGSSMLDGGE------DASSLGFSLGSVQSAPALRGLGLGLNGNAAAGGGRDGGXXXXXXXXXXXXXXGVGRGT-SITAFEDVNPFAGGIRV---DTSPPAGGDGRGAAGASGTRGDLSPLTASVG--GQSGSFFPGAGPESSSVGETSDDPHLALVKDPDWGRNVRGSPKEAGYLPKVKQVSRERPLTHERPYTRNPRDPRNVPARPNAHVSPKN---STSSRVGCNADPQYTGDD----GGSTKSSFPSLPMSLTGWGEGGGGGSLGKGGGVPGRPMRGKKGRGMITMTKPKEIIVQGLLR 643 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5392.12817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5392.12817.1 >prot_H-paniculata_contig5392.12817.1 ID=prot_H-paniculata_contig5392.12817.1|Name=mRNA_H-paniculata_contig5392.12817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=631bp VAGTTRPSPEPQPATIDRWARGWIMSRSTKARGQDSLDRMSDDGSDGSRSback to top mRNA from alignment at H-paniculata_contig5392:4120..8948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5392.12817.1 ID=mRNA_H-paniculata_contig5392.12817.1|Name=mRNA_H-paniculata_contig5392.12817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4829bp|location=Sequence derived from alignment at H-paniculata_contig5392:4120..8948- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5392:4120..8948- >mRNA_H-paniculata_contig5392.12817.1 ID=mRNA_H-paniculata_contig5392.12817.1|Name=mRNA_H-paniculata_contig5392.12817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig5392:4120..8948- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |