mRNA_H-paniculata_contig53801.12810.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53801.12810.1
Unique NamemRNA_H-paniculata_contig53801.12810.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A8F0F7J2_9PHAE (CF1 subunit epsilon n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7J2_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 2.890e-80
Identity = 127/134 (94.78%), Postives = 133/134 (99.25%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRFFEA 402
            MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDS+WTPIIVLGGFAVVKNDEVIVLISGVEEIKKQ+Y +AKELL+QATKDYDFAKTTKEKIDASQNIKIAASRLQA+RFFE+
Sbjct:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSIWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQEYIQAKELLAQATKDYDFAKTTKEKIDASQNIKIAASRLQAYRFFES 134
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A0R6M4U2_UNDPI (ATP synthase epsilon chain, chloroplastic n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4U2_UNDPI)

HSP 1 Score: 203 bits (517), Expect = 2.510e-65
Identity = 109/134 (81.34%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRFFEA 402
            MSL I VIAPDGLIWDT++DEVVLPSLTGQLGIL GHAPLITALEIGILR KV+S WTPIIVLGGFAV+KNDEVIVLISGVEEI KQDY EAKE L+ ATK+ D A+TTKEKIDASQ +KIA+S+LQAF+F E+
Sbjct:    1 MSLNIRVIAPDGLIWDTSSDEVVLPSLTGQLGILTGHAPLITALEIGILRIKVNSSWTPIIVLGGFAVIKNDEVIVLISGVEEIVKQDYAEAKEFLATATKNLDLAETTKEKIDASQEMKIASSKLQAFKFIES 134
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A6B9TNY3_SARFS (ATP synthase epsilon chain, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A6B9TNY3_SARFS)

HSP 1 Score: 202 bits (514), Expect = 7.190e-65
Identity = 108/131 (82.44%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRF 393
            MSL I VIAPDGLIWDT  DEVVLPSLTGQLGIL GHAPLITALEIGILR KV S WTPIIVLGGFAV+KNDEV+VLISGVEE+ KQ+Y++AKELL+QATK+ D AKTTKEKIDASQ +KIA+SRLQAF+F
Sbjct:    1 MSLNIRVIAPDGLIWDTKVDEVVLPSLTGQLGILKGHAPLITALEIGILRIKVKSSWTPIIVLGGFAVIKNDEVVVLISGVEEMSKQEYSQAKELLNQATKNLDLAKTTKEKIDASQEMKIASSRLQAFQF 131
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A2R4QPW4_9PHAE (ATP synthase CF1 epsilon chain n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW4_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.450e-64
Identity = 107/131 (81.68%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRF 393
            MSL I VIAPDGLIWDT ADEV+LPSLTGQLG+L GHAPLITALEIGILR KV+  WTPIIVLGGFAV+KNDEVIVLISGVE+++KQDY+EAKELL++ATK+ D AKTTKEKIDASQ +KIA+SRLQAF+F
Sbjct:    1 MSLNIRVIAPDGLIWDTIADEVILPSLTGQLGLLKGHAPLITALEIGILRIKVNLSWTPIIVLGGFAVIKNDEVIVLISGVEKMEKQDYSEAKELLAKATKNLDLAKTTKEKIDASQEMKIASSRLQAFQF 131
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A8F0FAV9_9PHAE (CF1 subunit epsilon n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAV9_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.060e-64
Identity = 108/134 (80.60%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRFFEA 402
            MSL I VIAPDGLIWDTT DEVVLPSLTGQLGIL GHAPLITALEIGILR KV+S WTPIIVLGGFAV+KNDEVIVLISG EEI K+DY++ KE L+Q+TK+   AKTTKEKIDASQ+IKIA+SRLQAF+F E+
Sbjct:    1 MSLNIRVIAPDGLIWDTTTDEVVLPSLTGQLGILTGHAPLITALEIGILRIKVNSSWTPIIVLGGFAVIKNDEVIVLISGFEEIIKKDYDQTKEFLTQSTKNLAVAKTTKEKIDASQDIKIASSRLQAFKFLES 134
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A8E5XRI3_9PHAE (ATP synthase epsilon chain, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI3_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.190e-63
Identity = 108/133 (81.20%), Postives = 121/133 (90.98%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRFFE 399
            MSL I VIAPDGLIWDT ADEVVLPSLTGQLGIL  HAPLITALEIGILR KV+S WTPIIVLGGFAVVK++EVIVLISGVEE+ K+DY++AKELL+QATKD + AKTTKEKI+ASQ+IK A+SRLQAF+F E
Sbjct:    1 MSLTIRVIAPDGLIWDTNADEVVLPSLTGQLGILADHAPLITALEIGILRIKVNSGWTPIIVLGGFAVVKSNEVIVLISGVEEVLKEDYSQAKELLAQATKDLELAKTTKEKIEASQDIKRASSRLQAFQFLE 133
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: ATPE_PYLLI (ATP synthase epsilon chain, chloroplastic n=4 Tax=Ectocarpales TaxID=2877 RepID=ATPE_PYLLI)

HSP 1 Score: 182 bits (462), Expect = 5.620e-57
Identity = 96/131 (73.28%), Postives = 116/131 (88.55%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRF 393
            MSL I VIAPDGLIWDTTA+ VVLPSLTGQLGIL GHAPLIT+LEIGILR K +S WTPIIVLGGFAV+K+DEV+VLISGVEE+ K+DY++AK +L++A  D D AKTTKE IDASQ +KIA+++++AF+F
Sbjct:    1 MSLNIRVIAPDGLIWDTTAEGVVLPSLTGQLGILTGHAPLITSLEIGILRIKTNSKWTPIIVLGGFAVIKDDEVLVLISGVEEVIKEDYSKAKSILAKAKIDLDSAKTTKEIIDASQELKIASAKVKAFKF 131
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A7T8G5D8_SCYLO (ATP synthase epsilon chain, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5D8_SCYLO)

HSP 1 Score: 150 bits (378), Expect = 3.410e-44
Identity = 83/131 (63.36%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRF 393
            MSL I VIAPDGL+WDTTAD VVLPSLTGQLGIL GHAPLIT+LEIGILR KV+S WTPIIVLGGFAV+ NDE+ VLISGVEE+ K DY +AKE+L                       KIA+++++AF+F
Sbjct:    1 MSLNIRVIAPDGLVWDTTADGVVLPSLTGQLGILTGHAPLITSLEIGILRIKVNSKWTPIIVLGGFAVIMNDEIQVLISGVEEVVKDDYAKAKEILXXXXXXXXXXXXXXXXXXXXXXXKIASAKVKAFKF 131
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A514CQ03_9STRA (ATP synthase epsilon chain, chloroplastic n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A514CQ03_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.870e-44
Identity = 79/131 (60.31%), Postives = 103/131 (78.63%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKTTKEKIDASQNIKIAASRLQAFRF 393
            MSL I VI PD ++W+TTA+E +LPS TGQLGIL  HA LITALEIG+LR +VD+ WTP+++LGGFA V+NDEV VL++GVEEIK+ D N A+  L +A+   + AKT +EKIDASQN+K  ++R+QA  F
Sbjct:    1 MSLTIRVITPDKIVWNTTAEEAILPSTTGQLGILTSHASLITALEIGVLRIRVDNNWTPMVLLGGFAEVENDEVTVLVNGVEEIKEGDINAARAELEKASLILENAKTDREKIDASQNLKRISARVQALTF 131
[Close]
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Match: A0A7S6U9U1_9STRA (ATP synthase epsilon chain, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.030e-43
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 1 
Query:    1 MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILRTKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQATKDYDFAKT-TKEKIDASQNIKIAASRLQAFRFF 396
            M +KI V+APD  IWDT  DEVVLP L GQ+G+L GHAPLIT+LEIGILR K+ S W PIIV GGFAV+KNDEVI LISG EEI + +Y++AK++L Q TKD     T TKEKI+ SQ++K A +R++A+ FF
Sbjct:    1 MGVKIRVMAPDRSIWDTEVDEVVLPGLNGQIGVLPGHAPLITSLEIGILRIKLGSSWEPIIVFGGFAVIKNDEVIALISGAEEIIRGEYDKAKQILKQ-TKDLLLNITDTKEKIEVSQDVKRAKARVEAYDFF 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53801.12810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7J2_9PHAE2.890e-8094.78CF1 subunit epsilon n=1 Tax=Protohalopteris sp. Ta... [more]
A0A0R6M4U2_UNDPI2.510e-6581.34ATP synthase epsilon chain, chloroplastic n=28 Tax... [more]
A0A6B9TNY3_SARFS7.190e-6582.44ATP synthase epsilon chain, chloroplastic n=13 Tax... [more]
A0A2R4QPW4_9PHAE1.450e-6481.68ATP synthase CF1 epsilon chain n=3 Tax=Fucaceae Ta... [more]
A0A8F0FAV9_9PHAE2.060e-6480.60CF1 subunit epsilon n=1 Tax=Desmarestia aculeata T... [more]
A0A8E5XRI3_9PHAE1.190e-6381.20ATP synthase epsilon chain, chloroplastic n=1 Tax=... [more]
ATPE_PYLLI5.620e-5773.28ATP synthase epsilon chain, chloroplastic n=4 Tax=... [more]
A0A7T8G5D8_SCYLO3.410e-4463.36ATP synthase epsilon chain, chloroplastic n=4 Tax=... [more]
A0A514CQ03_9STRA6.870e-4460.31ATP synthase epsilon chain, chloroplastic n=1 Tax=... [more]
A0A7S6U9U1_9STRA2.030e-4362.41ATP synthase epsilon chain, chloroplastic n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53801contigH-paniculata_contig53801:635..1039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue9e-34
Seed eggNOG ortholog2880.D1J7B3
Preferred nameatpE
KEGG koko:K02114,ko:K02134
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0355@1,KOG1758@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size405
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930550.2891915-CDS-H-paniculata_contig53801:634..10391622930550.2891915-CDS-H-paniculata_contig53801:634..1039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53801 635..1039 -
1691481344.1116714-CDS-H-paniculata_contig53801:634..10391691481344.1116714-CDS-H-paniculata_contig53801:634..1039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53801 635..1039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53801.12810.1prot_H-paniculata_contig53801.12810.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53801 635..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53801.12810.1

>prot_H-paniculata_contig53801.12810.1 ID=prot_H-paniculata_contig53801.12810.1|Name=mRNA_H-paniculata_contig53801.12810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MSLKICVIAPDGLIWDTTADEVVLPSLTGQLGILVGHAPLITALEIGILR
TKVDSVWTPIIVLGGFAVVKNDEVIVLISGVEEIKKQDYNEAKELLSQAT
KDYDFAKTTKEKIDASQNIKIAASRLQAFRFFEA*
back to top

mRNA from alignment at H-paniculata_contig53801:635..1039-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53801.12810.1 ID=mRNA_H-paniculata_contig53801.12810.1|Name=mRNA_H-paniculata_contig53801.12810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig53801:635..1039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTTAAAAATTTGTGTTATTGCTCCTGACGGATTAATTTGGGATAC
TACTGCTGATGAAGTAGTATTACCAAGTCTAACAGGACAATTAGGTATAC
TTGTAGGTCACGCTCCGTTAATTACTGCATTAGAAATTGGAATTCTTAGA
ACTAAAGTAGATTCTGTTTGGACCCCGATAATTGTACTAGGTGGATTTGC
TGTTGTTAAAAATGATGAAGTTATTGTTTTAATTAGTGGTGTTGAAGAAA
TTAAAAAGCAAGATTACAATGAAGCAAAAGAACTTTTGTCACAAGCAACA
AAAGATTATGATTTTGCAAAAACAACGAAAGAGAAAATTGATGCTTCTCA
AAATATCAAGATTGCTGCATCTAGATTACAAGCTTTTCGTTTTTTTGAAG
CTTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig53801:635..1039-

>mRNA_H-paniculata_contig53801.12810.1 ID=mRNA_H-paniculata_contig53801.12810.1|Name=mRNA_H-paniculata_contig53801.12810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig53801:635..1039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTTAAAAATTTGTGTTATTGCTCCTGACGGATTAATTTGGGATAC
TACTGCTGATGAAGTAGTATTACCAAGTCTAACAGGACAATTAGGTATAC
TTGTAGGTCACGCTCCGTTAATTACTGCATTAGAAATTGGAATTCTTAGA
ACTAAAGTAGATTCTGTTTGGACCCCGATAATTGTACTAGGTGGATTTGC
TGTTGTTAAAAATGATGAAGTTATTGTTTTAATTAGTGGTGTTGAAGAAA
TTAAAAAGCAAGATTACAATGAAGCAAAAGAACTTTTGTCACAAGCAACA
AAAGATTATGATTTTGCAAAAACAACGAAAGAGAAAATTGATGCTTCTCA
AAATATCAAGATTGCTGCATCTAGATTACAAGCTTTTCGTTTTTTTGAAG
CTTAAATGAGTTTAAAAATTTGTGTTATTGCTCCTGACGGATTAATTTGG
GATACTACTGCTGATGAAGTAGTATTACCAAGTCTAACAGGACAATTAGG
TATACTTGTAGGTCACGCTCCGTTAATTACTGCATTAGAAATTGGAATTC
TTAGAACTAAAGTAGATTCTGTTTGGACCCCGATAATTGTACTAGGTGGA
TTTGCTGTTGTTAAAAATGATGAAGTTATTGTTTTAATTAGTGGTGTTGA
AGAAATTAAAAAGCAAGATTACAATGAAGCAAAAGAACTTTTGTCACAAG
CAACAAAAGATTATGATTTTGCAAAAACAACGAAAGAGAAAATTGATGCT
TCTCAAAATATCAAGATTGCTGCATCTAGATTACAAGCTTTTCGTTTTTT
TGAAGCTTAA
back to top