mRNA_H-paniculata_contig5378.12805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5378.12805.1
Unique NamemRNA_H-paniculata_contig5378.12805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5378.12805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5378contigH-paniculata_contig5378:9218..9542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930549.6799176-CDS-H-paniculata_contig5378:9217..95411622930549.6799176-CDS-H-paniculata_contig5378:9217..9541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5378 9218..9541 +
1691481343.891637-CDS-H-paniculata_contig5378:9217..95411691481343.891637-CDS-H-paniculata_contig5378:9217..9541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5378 9218..9541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5378.12805.1prot_H-paniculata_contig5378.12805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5378 9218..9541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5378.12805.1

>prot_H-paniculata_contig5378.12805.1 ID=prot_H-paniculata_contig5378.12805.1|Name=mRNA_H-paniculata_contig5378.12805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
SDSRVGKATAVMALEAEMVSARTTAAAETEAEAGSETETARAKAAVADIR
AKEQDEAAPLPRVKPRATLLTRGGDSGGGDDDEDGEAGDHGRVVEGDGCS
RYGDSGDG
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mRNA from alignment at H-paniculata_contig5378:9218..9542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5378.12805.1 ID=mRNA_H-paniculata_contig5378.12805.1|Name=mRNA_H-paniculata_contig5378.12805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=325bp|location=Sequence derived from alignment at H-paniculata_contig5378:9218..9542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGACAGTAGAGTGGGGAAGGCGACAGCGGTAATGGCACTAGAGGCGGA
AATGGTGTCAGCACGGACGACCGCGGCGGCAGAGACGGAGGCAGAGGCAG
GATCGGAGACAGAGACGGCACGGGCGAAGGCGGCGGTGGCGGATATAAGA
GCAAAGGAGCAAGACGAGGCAGCGCCGCTGCCGCGGGTGAAGCCACGCGC
GACGTTGCTAACGAGGGGCGGAGACAGCGGCGGTGGTGACGATGATGAAG
ACGGAGAGGCAGGCGACCATGGCAGGGTCGTTGAAGGAGACGGGTGCAGC
AGATACGGCGACAGCGGTGACGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig5378:9218..9542+

>mRNA_H-paniculata_contig5378.12805.1 ID=mRNA_H-paniculata_contig5378.12805.1|Name=mRNA_H-paniculata_contig5378.12805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig5378:9218..9542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGACAGTAGAGTGGGGAAGGCGACAGCGGTAATGGCACTAGAGGCGGA
AATGGTGTCAGCACGGACGACCGCGGCGGCAGAGACGGAGGCAGAGGCAG
GATCGGAGACAGAGACGGCACGGGCGAAGGCGGCGGTGGCGGATATAAGA
GCAAAGGAGCAAGACGAGGCAGCGCCGCTGCCGCGGGTGAAGCCACGCGC
GACGTTGCTAACGAGGGGCGGAGACAGCGGCGGTGGTGACGATGATGAAG
ACGGAGAGGCAGGCGACCATGGCAGGGTCGTTGAAGGAGACGGGTGCAGC
AGATACGGCGACAGCGGTGACGGCAGTGACAGTAGAGTGGGGAAGGCGAC
AGCGGTAATGGCACTAGAGGCGGAAATGGTGTCAGCACGGACGACCGCGG
CGGCAGAGACGGAGGCAGAGGCAGGATCGGAGACAGAGACGGCACGGGCG
AAGGCGGCGGTGGCGGATATAAGAGCAAAGGAGCAAGACGAGGCAGCGCC
GCTGCCGCGGGTGAAGCCACGCGCGACGTTGCTAACGAGGGGCGGAGACA
GCGGCGGTGGTGACGATGATGAAGACGGAGAGGCAGGCGACCATGGCAGG
GTCGTTGAAGGAGACGGGTGCAGCAGATACGGCGACAGCGGTGACGGC
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