mRNA_H-paniculata_contig5376.12803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5376.12803.1
Unique NamemRNA_H-paniculata_contig5376.12803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5376.12803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5376contigH-paniculata_contig5376:10327..14030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930549.4451373-CDS-H-paniculata_contig5376:10326..104681622930549.4451373-CDS-H-paniculata_contig5376:10326..10468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5376 10327..10468 +
1691481343.8021193-CDS-H-paniculata_contig5376:10326..104681691481343.8021193-CDS-H-paniculata_contig5376:10326..10468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5376 10327..10468 +
1622930549.4746845-CDS-H-paniculata_contig5376:13872..140301622930549.4746845-CDS-H-paniculata_contig5376:13872..14030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5376 13873..14030 +
1691481343.8118036-CDS-H-paniculata_contig5376:13872..140301691481343.8118036-CDS-H-paniculata_contig5376:13872..14030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5376 13873..14030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5376.12803.1prot_H-paniculata_contig5376.12803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5376 10327..14030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5376.12803.1

>prot_H-paniculata_contig5376.12803.1 ID=prot_H-paniculata_contig5376.12803.1|Name=mRNA_H-paniculata_contig5376.12803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
FGSTAGVLLTYVVLWATWATVKREVKAVRRRRWGALSLLLAVKAVVAVTT
SCGWGSMVRLDGLRPALLLCAVEAWRCVASLGLASLTSKESLGQLAIQV*
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mRNA from alignment at H-paniculata_contig5376:10327..14030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5376.12803.1 ID=mRNA_H-paniculata_contig5376.12803.1|Name=mRNA_H-paniculata_contig5376.12803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3704bp|location=Sequence derived from alignment at H-paniculata_contig5376:10327..14030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGGGTCGACTGCCGGCGTGTTGTTGACGTACGTGGTGCTGTGGGCAAC
TTGGGCGACAGTGAAACGGGAGGTTAAGGCTGTAAGGCGGCGACGGTGGG
GGGCGTTGTCGCTGCTACTGGCGGTTAAAGCTGTCGTGGCAGGTGAGAAA
TGTCTCTACATGTTGGTGTTCGGGGACGAGGGCAAGTCAACCCAATTACC
ACAGTTAATAGATCTAAAACGCTCGTGTAGTAAGTCCATCGTACCCAATT
GTAAAAAAAAACAATCGAGGAGAAAAAATAAGACCAAAGATACAAAAGAT
GAAATATTTAAAAAAAAAAAAGGACGCGAGAGGAAAAAAACACAGATGCT
TGAAATGATTACAACCCTTGAAGCGCCTCAGAGGTTTTTTGTCTACAGCC
AAAGTGATCATGACTCTAGTATCGCGTTGCGACGACCATAGATTGCGGCG
AGAAGCCCCCCCTGGCTAAGACGCATGCCCCCTCCCTAGTTCTCGACCGA
CGACGGTTCGTGGCACGTGATGCCCGCGGGGGGATGATGGGTTCACCAAA
GCGAAACCGGACGTTGCCCGTGGGCACGTAGAGTTGCCCCGGAGGGTAGT
TATTTTTGAGTGGTTGCCCACGGGGGGAGAGATTTTCGGGCGTCAAGGTA
GGTAGGTGAACGTGCCATAGTGGTTCCGAATCAATACATCGGTAACACCT
ATCACAGCCAGCACGTATTTTCTGTGTTTGCTTTAATAGCCCTCAGGGAT
GTGTGGTATTTCCCCGCAATCTACGGTACTGTATAGCCAAGTAAGACATG
AAACACTGAGCAGAGACTCTTTTTTTTTTTTTTTTCATTCGAATCACGAA
GATACTTACTCTCCGTTCTTTACTTGGGTAACACACTATTCGCAACAAGA
TACTGCGATAATAATAAGTTTGGCTGCACACCTGGAACCACAAAAAACAT
GTCTGCTCGCGGTGGTGAGAACGAAAATTACCATGATGCGGAGTTCACCA
TTTAGGAACCGGATTTTGTAACGGCCAAAGTATAGGTTGGACAATAACCA
ATCTTGAATGGTGATGAATATGTCGACAGAATGCATCAACGAGCTCTATA
GGGCTGGTTAGTGCGTCTCAGGTGTAAAGGGGGGTCCATTTTTTGCCGTT
TTGGGAGCTTTTATGTTGGATTCCGTTATGAGGGAGAACGGGCACACATC
GGGGGGGTTTTGTGACGGCCAAACTATAAATTATCACTCCAGTCAGAGAT
TCCCAAAGGGTTAATAGGTAGACTTGAAGATAAAAATATATTTCTCTATA
TACCGTAATAGCTCAGCTGCCGATGCGTACGATCTTCAGCGCGCACGGTA
GGCATTTCTGAAATCCGTTAGCCTGCACAGTTGTATCGCCACTGCTCTAG
TGTAGCAGGATATATTCCGTCATTGTTGCTCCTGAATAAGCAAGAGTCTC
GGAGGCGTTGAAATACATACAAAATGGAGGTATCATTTTTTTGCAGGGGC
ATTCTGGGTAGTCATACCGCGATATTCGTTATCGATATCTTGAAAAGCTC
CATTTCCTGTTTACCGTTACTGTACAGGTGTCAGAGCCATTTCCCACTTC
CCGCACCGTGAAACCCCATTACTGTACCGTTACCGGAGCGTGAAATCCCG
TTACCGCACCGCTACCGTACCATTAAACCCCGTTAGCCTATCGTTACAGT
ACCGTGAAAAATGCTCATGACCGCGGATCTGTTTAAATCTTGGTTGGTGT
GTTTAGTGTACCTTAAAACCATTGTATCATGAGTCACTGACAAGCTAGCT
CAGTGGTGGTAGCCAAACGTTCGCCTGCAGCATAAGTGTAGTACGAGAGT
GGTAGCTGCTGGCTGATGGCAGCTCGAACGTTGCTGGCTCTCCAGTCGTT
GCTGCCTCGCGAATTGATGGTCATGCAGGCTCTGCAACCACCGCTGTTGG
CCCGCGAGCTGCTACTGGTGCAAGCTCTGCGGCCACGTCTGTTTTCTCAC
GAGTTTGTTAGTCATGGTGCTGCCACTAGTCCTGTCAGGGAAACGCGACT
CTCACTTTCCTGAACATGCTCAGTTTTTGCTGTGCTTTATTTTGTAAAAG
GCTGTTGTTCAACGTGTTATTGATCCTTCTCTTTCTTGTGAAGATCATGC
GTCATAGGTATGCACCGCATCCTGACTACGCCGGGACGAGGCGGGGATTG
GGGTCAAGTCAATCTACGAACTAAACAAGTCGTTGGAGTAAAGGAGTAAA
TGAGCGTCCTTGTGAGACTCCCCGTACGTCCCGTTTACTACATGCACATG
GGTTTTGTGGCTATGTTTTGTATCTTGCGCTTGGGCAAGGCTTGAGCACC
GAAATATTGTGCCAAATACCAGATATCGCGGCGCATGGTACCGAGAAGAC
AAAATACCATACCATACCGTACCTTACCGTGCCGCGGGGGAAAAGACCGA
ATACAGCTTACCGCGCAAATATCGAGAAATCTATATACCGTACCGTGCTA
CCGATATGTCGAATATCGTTTACCGACACGATACCGAGGAAATCATGTAC
GATACCGTTTTTTTTATTTTTGAAATACCATTACCGAGAATACTCCTATT
TTGTTTATTGTAGTTTTCTACACGGCCGGCAAATCAAATTATAACATTTT
GAGTGTGCGTTTCGCGTTTTGCGCAGGTCACATGGAACAGCTCCTCATCG
CACTCCATGGTGTAGATGGTGCAGCGTTCCTTGTAGACCAAACAGAGCAC
CCAGAAACCTTACTCGTTCCGAGTAAATAGACACAACAGCACGGAGTGTT
CTGTTGTCATGGTTCACAAATCAACCGCTTGTGTGCGGGAGGGACGGAAT
GTCGCTACACTTGTTCAAAAACGTAAATAGATGTCTCGTATGCACAGGTG
TTTGGCGCTCATCGCGTGTACGGTATTTACACACATCCAACGAGTCCTCA
GACGGTTTGACTCCGTAACTCCGTAGCCCTGAAGTATCGACCGTCAGTCA
AGCTGAAGAAGGGATCGACGAGATGTCGGTATAGCATGATGCATGCACAC
ACAGGGACTTAAAAAAAGCGAACAAGATTGTGTGCTCTATTATTTCAAAC
CGCTGTTTGTTGTTTCGCACGTCGGATCGAACAGATGAGAACGAAACACA
TTCTAAGAGCGTACGATATAGCTAGGACCGAAAGAAACAGACAGGAGAAG
GAGCTTCTTGGTTCTCACCATTGGGCTTGTCGTACATTGGTCGTTTTAGA
TTTATTCGTTTAGTCGTTGGATGTGTCCAGTTTTAACAATATTTTCACTG
GGGTTGTTTTTTTCAACCTGTATGTCTGCTCTGCCTGCCGCATGCTCAAG
CGGCATGTACCGTGTGATACATAATTAAATATTTTGCGTTGTTTTGACTC
ATATTTTTGTCTTATTGCTTTGTCATCACTAGTTATGTTAGTTTTTCAAA
CCGTATTTTCATAGTTTAGACGCTGTCCAGCAGGTGAAGCTGATGTACCC
CCCCTCCCCCTCCCGCTCAAACAAACGTGCCTCACAGGTTTGTTAGTGAC
TACGTCGTGTGGGTGGGGGTCGATGGTGCGTCTGGACGGCCTAAGACCAG
CTCTCTTGCTGTGCGCCGTGGAGGCCTGGCGGTGTGTCGCTAGCTTGGGG
TTGGCCAGTCTGACGTCCAAGGAAAGTCTTGGGCAGCTTGCCATACAGGT
TTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5376:10327..14030+

>mRNA_H-paniculata_contig5376.12803.1 ID=mRNA_H-paniculata_contig5376.12803.1|Name=mRNA_H-paniculata_contig5376.12803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig5376:10327..14030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGGGTCGACTGCCGGCGTGTTGTTGACGTACGTGGTGCTGTGGGCAAC
TTGGGCGACAGTGAAACGGGAGGTTAAGGCTGTAAGGCGGCGACGGTGGG
GGGCGTTGTCGCTGCTACTGGCGGTTAAAGCTGTCGTGGCAGTTTGGGTC
GACTGCCGGCGTGTTGTTGACGTACGTGGTGCTGTGGGCAACTTGGGCGA
CAGTGAAACGGGAGGTTAAGGCTGTAAGGCGGCGACGGTGGGGGGCGTTG
TCGCTGCTACTGGCGGTTAAAGCTGTCGTGGCAGTGACTACGTCGTGTGG
GTGGGGGTCGATGGTGCGTCTGGACGGCCTAAGACCAGCTCTCTTGCTGT
GCGCCGTGGAGGCCTGGCGGTGTGTCGCTAGCTTGGGGTTGGCCAGTCTG
ACGTCCAAGGAAAGTCTTGGGCAGCTTGCCATACAGGTTTGATGACTACG
TCGTGTGGGTGGGGGTCGATGGTGCGTCTGGACGGCCTAAGACCAGCTCT
CTTGCTGTGCGCCGTGGAGGCCTGGCGGTGTGTCGCTAGCTTGGGGTTGG
CCAGTCTGACGTCCAAGGAAAGTCTTGGGCAGCTTGCCATACAGGTTTGA
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