mRNA_H-paniculata_contig537.12792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig537.12792.1
Unique NamemRNA_H-paniculata_contig537.12792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig537.12792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig537contigH-paniculata_contig537:21772..26772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930548.009863-CDS-H-paniculata_contig537:21771..219971622930548.009863-CDS-H-paniculata_contig537:21771..21997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig537 21772..21997 +
1691481343.2961566-CDS-H-paniculata_contig537:21771..219971691481343.2961566-CDS-H-paniculata_contig537:21771..21997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig537 21772..21997 +
1622930548.0235186-CDS-H-paniculata_contig537:26532..267711622930548.0235186-CDS-H-paniculata_contig537:26532..26771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig537 26533..26771 +
1691481343.3071957-CDS-H-paniculata_contig537:26532..267711691481343.3071957-CDS-H-paniculata_contig537:26532..26771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig537 26533..26771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig537.12792.1prot_H-paniculata_contig537.12792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig537 21772..26771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig537.12792.1

>prot_H-paniculata_contig537.12792.1 ID=prot_H-paniculata_contig537.12792.1|Name=mRNA_H-paniculata_contig537.12792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
LEGAAAVVNSDQKTVSPASLDEPLSVKGLVSAVEIGAPKRPIITQQQQQA
RPSIVVGKVCEPIRPTRLDLSSVSEARTPSSRILYTAKGTGHNLNLDIPC
TPGAPITPLNPSTTTATGRGKFFGGRPTPLRLSDVKAGVTTPRNGSSYQQ
ERRGW
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mRNA from alignment at H-paniculata_contig537:21772..26772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig537.12792.1 ID=mRNA_H-paniculata_contig537.12792.1|Name=mRNA_H-paniculata_contig537.12792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5001bp|location=Sequence derived from alignment at H-paniculata_contig537:21772..26772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGAGGGTGCAGCCGCCGTGGTCAACAGCGATCAGAAAACGGTCAGTCC
AGCCAGTCTGGATGAGCCTCTTTCTGTCAAAGGTCTGGTTTCCGCCGTCG
AGATCGGTGCTCCAAAGCGGCCGATAATAACGCAACAACAGCAACAAGCA
AGGCCGTCTATTGTGGTTGGGAAGGTGTGCGAGCCGATACGACCGACGAG
GCTGGACTTGAGCAGCGTGTCTGAAGGTGCGTGCTGGTTTCTTGATTTTT
TGCCAGAGCCTGTTTTGCGCGCGAGAGAGATCGTCTGTTGCACTCGTGAC
ACACTTTGCATCTTTTCACCCGTTTTTTTCCCCGAAGCTTTGTGCGCGAA
CTCGTAGAGGTCTGAAATAGATGACCAAGAGTCGCTCTCAAGAGCTCTGG
GATGCCCGAAGGCTGCTGTTGAGACATGATGGCTGGGTGGCCTAGCGGCA
GGACGGCCGGTGTTTGTTTTGATTTGGGTGCTGGGGCTCTGAATGCGCCA
ACGATCGTCCACCTGCCCCCCAGTCGTTTGAGTCGGATGTTCAACAAATT
TTTGTGCTCGCAGAAGGGTGTCTACCTTTACTGTTTGTGTGCAATACCTA
CAGAAGATGCTGAAGTATTAACAATTGTCCAACCGCCACCTGCATAAATG
AGATGACCCTGTGTAAAACGCGGGGTGCCCAGCGTATACTGTGTTTCTGA
AAGACGAAATCCCTTTGACAAACGTTTGTAGTGGAATTGAGCGAGAAACG
GTGATGGAGGAGAAATACGCAAAAGAGAGAGTACGGTCAACGGGGCGGCC
CGGCCCGTCTCATAGTCCTGCTCGTGTCTCCCACGTTTATTTATTTCTGC
TTGCCCTGGCTGCATCTTAATATCCGTGTTTTTTTATGGGATTACAGCAT
TGACTTTAAAAATACAGATTGAACGTACATCACTCATAATTGTCAAGTAA
CAGACGTGTGGATAATTGCCGTCGCAGCACCACCGCATCGTTGATGAATA
GATGAAGAGAAAAAGGTACAGCCAAAATCAGTGTCGGCGATTGTATGCAT
CTATGTTGAATGTTTGAGTGCTGGCTGCACTGCTTTTCCCATCATCATCG
TCATCTGACAAGTTGAGATGTGCGCAAGACAGACTGTGCAAAGATTGATA
TTGTCCTCGAGGCTCCACGTTGCGCGCCAATTCTCGTGTATGGAAACTAC
GGAATATTCGGGCGATGAAACTTTTGCACACCTGAAACGGGCAGTATACC
TACGCACAGGAGTCAAGTCAGTCAGTCAGTAACGACAGGGTACTTAAATT
GTAGATTGTAATTGTAAACTAATTGAGGCGCTGGTTTATCTTGTCACATT
GCCCGTCTCCCCGGCACCTGCGGCGCGCGCTGTGATGCATTGCATATGTG
CCTACATATCCGTCAGCATATTCTAACATGCACACACGGACAGAATTCCA
GCTACCTGTTCGGTTCTGCACAGCTCTAGAAAACTACTCCGAAATGACCG
TCTTCTAATTCGAAATCATCACTAGCGACGAAGTAGGCCTGATCCCTCTC
GTTACCTTACACGGTTAAATCACCGACTGTACTGTTTTTTTCTGGTTTTT
TTGTCATTGTTGCGGGTGCTGGTACGGGTCTTCCAGTAGTTTACGGTCAA
TGTTCTGATGAAGACGACTATGGGGGGGATTGAAATCTGAATTTCAATCC
AAATGCGCTCAGCTTTTTCAGGATCGTGAAATATTTTCCTGCGAGTATGG
GCTTTCACAATGGGAAAGATTGAAGACATTCCATTTTTTTCTTGTAGCCC
TTGCGAAAGAAAAGCGTTTTCTTCGGACCATGTAGCGCCGACAGAACAGG
GTCATTTGTTTTATGTACCAGCGCAAGTATGGAGCATTTTCTGGGAACTT
TATTCCAGCACAATTATGAACGGCTCGGTCGAAAAAAGAAAACAGCATGG
GTCCATGAAACCGTCTGGCCTTGCCTGCTGGGATCGGAATCAGAAATCGA
AATGGTGAGTCATTTCAATATTTCAAGGATCGATCACGACGTGGGTTGTC
GATGGAAGGCATTTCTCGTGAGCTGGAATTTGAAATTTTATGGCGTTCAC
GAGCTTCTAATGCCCCCGTCATGCCCTGAACTTTCAGGAACACCCGCTTC
ATCGAAAGTGCGAAGCAAAGATATTCGCGTATGCACACCAGCAGGAGACG
ACCGAAAACCCAGTGTCTGTCGACAGTTCAAACAACCAACTCTCTATTTG
GCCATGGTGTGCGCCTGTTTGATGGAGATATGAATAATAATGAGGGAGTA
TGAGCAAACCGCGTGGCTCTATATTTATTTCCGAGCACATGTAAATTGTA
TTTGCAAGCTTTCGACCGTTGCTGTTATGGCGCGAACAATTCAAATTATT
CATCTCAATAATTTCTTCATCAAATGAATCGAAACAAACTATTCTCATGG
CTCATGGATCGATGAGGGCTACTTGTATTGCGCACTCAGTGATGACTCCA
GAGACCCCGCACTCGGCGCAATCCTTTAAAATGCTCCACCGTGCCCACCC
CAGCCAGTGCCCTTGAACTGAACAATATACAATCAATTGCCGGCGGTCTC
GAAATCCTGGGCAGTTTAGCACCGCTTTTGACCATATGTCATGGTTGATG
GATGAAATCGAGCGATCAAAAATGGTGACTGATTCCGGCCAACGAGGCCA
CCTCTGTCGTGGCATTTTCTGTCGACATTTTCTTACTTGACAAGTGGACT
TCGGTGGCGTATAACTCGCCAGGCTTTGGCCCAGAAAAACTGGAGTCGGC
GGGAAGTTTGTCGTATGTATGTGTAGAGGGCATCTTATTTGTCCATTGGT
TGCAGTCCCCAAGCTTGAACTTTTCGTTCTCGTCACTCAGTTGGAACCTG
TTTTCTCCAGAGATACACGAAAATTCACGATGTCTAGAAAAAACATGTGT
ATAACTAGCCTAAACTCGCGAAAATAACGGGAGTAGCAAGCTCGTAGCTT
GATGGCTTAAAGAAGGAGACGAACATGATTCTCTGTTCGTTCACATGTGA
CCAATTTTTCATATTTCGAATCCTATTGGTCCGTAACTGGAGGAATTCTG
TGCTGGAGAAGTCCACTTTCGCAGGAAATATGCCGGCAACAAAATGCAAG
AGAAGAAATCGTCTACTCGTCCGATACCTGAGTTCGCGAAACCGTTCAAA
ATTGCCGCGAATTTTAATCTTGAGGAGGCCCACAAGAGATGGACCAACAA
TAAAGGCACAAGCCAAGACATGCAATTATCTGCGTATAACCCGTGGGTCA
TGTCGTAAAACACTCCGTCGGGTCATGCCATCATTTGTCAGGGTGAGATG
AAGAACAGTAAATACGTCAGGTGGGAGTCCCATATTTCATTTTGGAGTAA
CCAATTCGGCATTTCCAGTGAATCCCAAAACGAGGACAGTTAGGACCGAT
GACAGCGATCAATGGACTGATTCATAGATAGATTCTGCAATATCTCGACG
ATAATGTGGGCGCCATTTGGCACAAAATGTAGAAAAGTCGATGCCCACAG
TGTTGCGCTTGCACGGGATCGATCAGATTAAAATCCCAAAATTACGTGAG
TTTTGTGATTGTAACGTTAACGACGCAAATCATCTACGGGTGATGATTCC
CATGAATTTGGATGGTTTGAAAAAATCTCATTCCTTTTGGATGATGAAAG
TTGGAGCTACTACGGGCAGATATTCTTCTCCAATCGACAGTAAGAGTTTG
ATTTTGTGGTAGGTATTAATCGATTCTAATCAACCATGCCACATTTTAAC
ACGACTCGGATCATGGTTGGTTGTCTTCCTTGGTTTTGTCTGACCAACTC
TTTTTGCTCGAAGTCATTTGTCGTTCTATCTACGTCTATCTACGATATTG
TCAAATCTGGAATACTGCTCTTTTCTGCTGGAGTCGTTTTTTCGACAATT
TTCAAAAGCAAACCATCTGCGCACATTTCCCGCAGCTTTTCGCATCCTAC
GACGATCTAAAACCAAACTCTGTGCTCACTAGCTCTCGCGTTATTCTCGT
TGGTAGTCTGGAGTATGGCATTTTGTGCACGTGTCCTATCGAGGCCCGTC
GACATCCGGGCTGCCCCACTGCTATCAGGCTTTGACTTTTGCGAAAATTA
TCTATACCGTCCCAACCAGCAACTCTGCCCCATGTCGTTGGGTTCGGGGC
GGTTTGGGGCAAGCATGTCTAGCCATCCTTGAGGAAAGTTGTGGAAGTAC
TGACATGACATAACGCTCCTCCGTAGGGTGTTCGAAGCTATGGGTGGAGG
GCAGGAAGCACTCACAGGACGAAGTCCTGTTGTTCCTCGCGACGGGACCC
TTCCCTTCCCCCCCCACGCCGCCCCCGGTACCACCACGAAGAAACTGCGG
CAAGCTGCGTCAAGTGGGAGTAGGTTTTACAGAAGTCACGCCCATGCGTA
GCTCCGGGTTTGCCCACCATGCTTTTGGAGAGAGGGATTAAGCCGTCGGT
ACAGCTACCCACGAAAAATCGGCCAGATTTTATCTCTTGATGAATGATTT
TGACCAGGAAATGGTATTTTCAAAACGGATACCGCTGATACCATTCTGGA
TGCTCTGAGTAGTTTCCTGTAGGAATTGTATCGTCTAAAGTGTACATTTT
ATAGTAATGGGTACAGGATTGTCCATGGTCGCCATGGTCGCATACGCAGT
TGAATAAGTTGGAGACATCTCACCCGCCCCCGTACACCCGTCCCCCCCCT
TCCCGCTCCAGCGCGTACACCATCATCCCGCATACTCTACACGGCCAAGG
GAACTGGGCACAACCTAAACCTCGACATCCCCTGCACGCCAGGCGCACCG
ATCACCCCCCTCAATCCATCTACCACCACTGCCACGGGCCGGGGCAAGTT
TTTCGGCGGACGGCCCACACCTCTCCGTCTCTCTGACGTCAAAGCAGGTG
TCACCACCCCCCGGAACGGTAGCAGCTACCAACAGGAACGACGTGGCTGG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig537:21772..26772+

>mRNA_H-paniculata_contig537.12792.1 ID=mRNA_H-paniculata_contig537.12792.1|Name=mRNA_H-paniculata_contig537.12792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig537:21772..26772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGAGGGTGCAGCCGCCGTGGTCAACAGCGATCAGAAAACGGTCAGTCC
AGCCAGTCTGGATGAGCCTCTTTCTGTCAAAGGTCTGGTTTCCGCCGTCG
AGATCGGTGCTCCAAAGCGGCCGATAATAACGCAACAACAGCAACAAGCA
AGGCCGTCTATTGTGGTTGGGAAGGTGTGCGAGCCGATACGACCGACGAG
GCTGGACTTGAGCAGCGTGTCTGAAGTTAGAGGGTGCAGCCGCCGTGGTC
AACAGCGATCAGAAAACGGTCAGTCCAGCCAGTCTGGATGAGCCTCTTTC
TGTCAAAGGTCTGGTTTCCGCCGTCGAGATCGGTGCTCCAAAGCGGCCGA
TAATAACGCAACAACAGCAACAAGCAAGGCCGTCTATTGTGGTTGGGAAG
GTGTGCGAGCCGATACGACCGACGAGGCTGGACTTGAGCAGCGTGTCTGA
AGCGCGTACACCATCATCCCGCATACTCTACACGGCCAAGGGAACTGGGC
ACAACCTAAACCTCGACATCCCCTGCACGCCAGGCGCACCGATCACCCCC
CTCAATCCATCTACCACCACTGCCACGGGCCGGGGCAAGTTTTTCGGCGG
ACGGCCCACACCTCTCCGTCTCTCTGACGTCAAAGCAGGTGTCACCACCC
CCCGGAACGGTAGCAGCTACCAACAGGAACGACGTGGCTGGCGCGTACAC
CATCATCCCGCATACTCTACACGGCCAAGGGAACTGGGCACAACCTAAAC
CTCGACATCCCCTGCACGCCAGGCGCACCGATCACCCCCCTCAATCCATC
TACCACCACTGCCACGGGCCGGGGCAAGTTTTTCGGCGGACGGCCCACAC
CTCTCCGTCTCTCTGACGTCAAAGCAGGTGTCACCACCCCCCGGAACGGT
AGCAGCTACCAACAGGAACGACGTGGCTGG
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