mRNA_H-paniculata_contig5361.12784.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5361.12784.1
Unique NamemRNA_H-paniculata_contig5361.12784.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: D7FUY1_ECTSI (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY1_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 1.070e-110
Identity = 181/301 (60.13%), Postives = 226/301 (75.08%), Query Frame = 2 
Query:  254 RPCRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDH-HVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPAD--SICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNY---------SHDLIHDLGKPPTSQLTARECAEL----VSTVREEVLHGFGRVFGLDMEILEIDVGVRRG----VESQIFPEACDQRLRERLKADSRRQLELVRR 1096
            R C VY+ITGG VPY+ AW+WQQRLLHERMAWQR+++   + +DVLL+LEH  VYTLGRGS+LD+LRF+P D  S+   EVRRT+RGGEVTWHGPGQ++GYPVLDLN+HKKDLHWYLRQLEEVVIRVL RYGL+GERE EHTGVWV GAK+AAIGLNASRW+TSHGFALN++PDL+AFE+IVPCGI GRPVTRLC+          S + I    +   + +TA    +     + +VR  V+  F  VFG+ ++++++D          +E +IFP  C+ +L  RL+ADS RQLEL RR
Sbjct:   73 RKCLVYNITGGSVPYDRAWLWQQRLLHERMAWQREEYPSQDSYDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLEGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPDLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARVDGTGVTASNAVDNHAVDMGSVRSLVMQEFEDVFGVRVQVVDVDAAAHSSGDDDLEKEIFPADCEPQLLSRLQADSLRQLELTRR 373
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: A0A6H5JUQ5_9PHAE (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUQ5_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.240e-94
Identity = 161/272 (59.19%), Postives = 201/272 (73.90%), Query Frame = 2 
Query:  341 MAWQRQDH-HVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPAD--SICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNY---------SHDLIHDLGKPPTSQLTARECAEL----VSTVREEVLHGFGRVFGLDMEILEIDVGVRRG----VESQIFPEACDQRLRERLKADSRRQLELVRR 1096
            MAWQR++    + HDVLL+LEH  VYTLGRGS+LD+LRF+P D  S+   EVRRT+RGGEVTWHGPGQ++GYPVLDLN+H KDLHWY+RQLEEVVIRVL RYGL+GERE EHTGVWV GAK+AAIGLNASRW+TSHGFALN++PDL+AFE+IVPCGI GRPVTRLC+          S + I +  +   + +TA   A+     + +VR  V+  F  VFGL +E++++D          +E +IFP  C+ +L  RL+ADS RQLEL RR
Sbjct:    1 MAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLDGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHNKDLHWYMRQLEEVVIRVLGRYGLEGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPDLSAFEAIVPCGIQGRPVTRLCDLVGTETWFPPSAEQIENAARVDGTDVTASNAADNHAVDMGSVRSLVMQEFEGVFGLRIEVVDVDAAADGSGDDDLEREIFPADCEPQLLARLQADSLRQLELTRR 272
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: A0A835YUM8_9STRA (Lipoyl(octanoyl) transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM8_9STRA)

HSP 1 Score: 274 bits (701), Expect = 8.080e-81
Identity = 126/191 (65.97%), Postives = 152/191 (79.58%), Query Frame = 2 
Query:  254 RPCRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQ---DHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPV 817
            R CRVYS+    VPY +AW WQQ LL +RMAWQRQ   D    G D L+LLEH SVYTLGRGST +NL+F+PA   C HE+ R +RGGEVTWHGPGQ++GYP+LDLN+H KDLHWYLR LEE+++RVLAR G++GER+  +TGVWV   K AAIGLNASRW+TSHGFALN+ PDL+AF++IVPCGI  + V
Sbjct:   10 RRCRVYSVEDRQVPYAEAWAWQQSLLRQRMAWQRQRGGDSPHYGCDALILLEHPSVYTLGRGSTTENLKFDPAAPGCPHELYRIERGGEVTWHGPGQIVGYPILDLNFHTKDLHWYLRSLEEMIMRVLARRGVQGERDPGNTGVWVGNRKYAAIGLNASRWVTSHGFALNVCPDLSAFDNIVPCGISDKSV 200
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: A0A846A1P3_9CYAN (Octanoyltransferase n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A1P3_9CYAN)

HSP 1 Score: 238 bits (608), Expect = 6.120e-68
Identity = 117/194 (60.31%), Postives = 147/194 (75.77%), Query Frame = 2 
Query:  254 RPCRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNY 835
            RPC +YS+  GL+PY+ A  WQQ+L+ +R    RQD  +   D  LL EH  VYTLGRG+T   L+F+PA  I  +EV RT+RGGEVT+H PGQL+GYP+L+L Y+++DLHWYLRQLEE+VIRV+ARYGL G+R A  TGVWVEG K+AAIG+  SRWIT HGFALN++PDL+ F+ IVPCGI  RPV  L  +
Sbjct:   10 RPCELYSL--GLIPYQTARFWQQQLVAQR----RQDTTLA--DAFLLAEHPPVYTLGRGATSSFLKFDPA--IAPYEVHRTERGGEVTYHCPGQLVGYPILNLRYYQQDLHWYLRQLEELVIRVIARYGLVGDRIAGLTGVWVEGRKVAAIGIKVSRWITMHGFALNVNPDLSGFQRIVPCGISDRPVGSLSEF 193
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: A0A251WGY3_9CYAN (Octanoyltransferase n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WGY3_9CYAN)

HSP 1 Score: 234 bits (598), Expect = 1.090e-66
Identity = 112/198 (56.57%), Postives = 147/198 (74.24%), Query Frame = 2 
Query:  254 RPCRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNYSHDL 847
            R CR+Y    GLVPY +AW WQQ+ + +R A  + D  ++  D L+LLEH  VYTLG+GS    L+F+P     ++E+ R +RGGEVT+H PGQL+GYP+L+L +++KDLHWYLRQLEEV+I+VL  YGL+G+R  E TGVWVEGAK+AAIG+  SRWIT HGFALN+ PDL+ F  IVPCGI  +PV R+ ++  DL
Sbjct:   12 RSCRLYQ--PGLVPYAEAWAWQQQQVRDRKA--QIDAGLDPADSLMLLEHPPVYTLGQGSDAGFLKFDP--QTAEYELHRIERGGEVTYHCPGQLVGYPILNLQHYRKDLHWYLRQLEEVIIQVLGEYGLQGDRVPELTGVWVEGAKVAAIGIKVSRWITMHGFALNVCPDLSGFSQIVPCGIADKPVGRMTDWLPDL 203
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: UPI001A0E5DBD (Lipoyl(Octanoyl) transferase LipB n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI001A0E5DBD)

HSP 1 Score: 231 bits (588), Expect = 4.250e-65
Identity = 116/228 (50.88%), Postives = 155/228 (67.98%), Query Frame = 2 
Query:  254 RPCRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNYSHDLIHDLGKPPTSQLTAREC-AELVSTVREEVL 934
            R C +Y  T GL  YE AW WQQ L+  R      D      DVLLLLEH ++YTLG+G++L+ L+F+PA     H + R +RGGE+T+H PGQL+GYP+L+L +H++DLHWYLRQLEEV+I+V+A+YGL GER    TGVWVEG K+AAIG+  SRWIT HGFALN+ PDL+ FE+IVPCGI  +PV  +  +   +  D  +   +Q  A+    +L+ T  E +L
Sbjct:   10 RHCLLY--TPGLTCYEVAWGWQQSLVKRRKQGNSDDQTANPEDVLLLLEHPAIYTLGQGASLEFLKFDPAH--LPHPLYRVERGGEITYHCPGQLVGYPILNLRHHRQDLHWYLRQLEEVLIQVVAQYGLTGERIPGLTGVWVEGRKVAAIGIKVSRWITMHGFALNVCPDLSGFEAIVPCGIADKPVGSMAQFVPGICFDQVQQRVAQTFAQVFDVKLIPTPLESLL 233
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: A0A1Z4I5R9_9NOSO (Octanoyltransferase n=3 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A1Z4I5R9_9NOSO)

HSP 1 Score: 229 bits (584), Expect = 7.200e-65
Identity = 121/238 (50.84%), Postives = 156/238 (65.55%), Query Frame = 2 
Query:  260 CRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNYSHDLIHDLGKPPTSQLTARECAELVSTVREEVLHGFGRVFGLDMEI 973
            C VY+   GL+PY +A  WQ+ LL +R+     D      DVL+LLEH  VYTLG+GS+LD L+F+P  S  + E+ R +RGGEVT+H PGQL+GYP+L+L+ H KDLHWYLRQLEEV+IRVLA YGLKG+R    TGVW+EG KIAAIG+  SRW+T HGFALN+ PD+  FE IVPCGI  +PV  L  +              ++T +E       VR  V+  F  VF ++M +
Sbjct:   12 CVVYN--KGLMPYTEAHAWQRSLLRDRIDNPNLD------DVLILLEHPPVYTLGQGSSLDFLKFDPNQS--EFEIHRIERGGEVTYHCPGQLVGYPILNLHRHCKDLHWYLRQLEEVIIRVLAVYGLKGDRTPPLTGVWLEGRKIAAIGIKVSRWVTMHGFALNVCPDMTGFEQIVPCGIADKPVGSLAQW------------IPEITTQE-------VRVHVIQAFAEVFRVEMVV 220
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: A0A6P0QK32_9CYAN (Octanoyltransferase n=3 Tax=unclassified Microcoleus TaxID=2642155 RepID=A0A6P0QK32_9CYAN)

HSP 1 Score: 229 bits (583), Expect = 9.500e-65
Identity = 119/228 (52.19%), Postives = 150/228 (65.79%), Query Frame = 2 
Query:  284 GLVPYEDAWIWQQRLLHERMAWQRQDHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNYSHDLIHDLGKPPTSQLTARECAELVSTVREEVLHGFGRVFGLDM 967
            GLVPY  AW WQ+ LL ER+     D      DVLLLLEH SVYTLG+G++L+ L+FNP++     EV R +RGGEVT+H PGQL+GYP+L+L ++++DLHWYLRQLEEV+I+VLA YGLKG+R A  TGVW+EG K+AAIG+  SRWIT HGFALN+ PDL  F  IVPCGI  +PV  L  +   +                    V  VR  V   F  VFG+++
Sbjct:   11 GLVPYSVAWDWQRSLLEERIKDASLD------DVLLLLEHPSVYTLGQGASLEFLKFNPSEVAL--EVHRVERGGEVTYHCPGQLVGYPILNLRHYQQDLHWYLRQLEEVLIQVLASYGLKGDRIAGMTGVWLEGRKVAAIGIKVSRWITMHGFALNVCPDLIGFGHIVPCGIANKPVGSLAQFIPGI-------------------RVEDVRPVVATAFAEVFGVEL 211
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: UPI001CA75431 (lipoyl(octanoyl) transferase LipB n=1 Tax=Leptothermofonsia sichuanensis TaxID=2917832 RepID=UPI001CA75431)

HSP 1 Score: 229 bits (583), Expect = 1.160e-64
Identity = 123/244 (50.41%), Postives = 164/244 (67.21%), Query Frame = 2 
Query:  254 RPCRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNYSHDLIHDLGKPPTSQLTARECAELVSTVREEVLHGFGRVFGLDMEILEID 985
            R C++Y     +VPY  A  WQ+ L+ ER    RQ+ ++E  DVL+LLEH  +YTLG+G+  D L+F+PA S  + EV R +RGGEVT+H PGQL+GYP+L+LNYH+KDLHWYLRQLEEV+I+VLA YGLKGER A  TGVWV+G K+ AIG+  SRWIT HGF+LN+ PD+  FESI+PCGI  +P+  L  +           P  +L         + VR++V+  F  VFGL +   ++D
Sbjct:   13 RHCQLY--VREIVPYRIAHSWQRSLVAER----RQNPNLE--DVLILLEHPPIYTLGQGARSDFLKFDPAQS--ELEVIRIERGGEVTYHCPGQLVGYPILNLNYHQKDLHWYLRQLEEVLIQVLAAYGLKGERLAGLTGVWVDGRKVGAIGIKVSRWITMHGFSLNVCPDMEGFESIIPCGIADKPIGSLEQFI----------PGIEL---------ARVRQQVILAFAEVFGLQIVAEKVD 227
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BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Match: A0A8J6WLX9_9CYAN (Octanoyltransferase n=4 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6WLX9_9CYAN)

HSP 1 Score: 229 bits (584), Expect = 1.570e-64
Identity = 120/236 (50.85%), Postives = 161/236 (68.22%), Query Frame = 2 
Query:  260 CRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDHHVEGHDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHGPGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGVWVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRLCNYSHDLIHDLGKPPTSQLTARECAELVSTVREEVLHGFGRVFGLDM 967
            C +Y  T GLVPYE AW WQ+ L+ +R    R+D  +   DVLLLL+H  VYTLG+G++LD L+F+PA +  Q  + R +RGGEVT+H PGQ++ YP+L+LN ++KDLHWYLRQLEEV+I+VLA YGL+GER A  TGVWVEG K+AAIG+  SRWIT HGFALN+ PDL  F++IVPCGI  +PV  L  +  D+                    ++ V+++V   F +VFG+ +
Sbjct:   20 CWLY--TPGLVPYEVAWAWQRSLVAQR----REDPELS--DVLLLLQHPPVYTLGQGASLDFLKFDPAQTELQ--LCRVERGGEVTYHCPGQVVSYPILNLNRYRKDLHWYLRQLEEVLIQVLAAYGLQGERYAGLTGVWVEGRKVAAIGIKVSRWITMHGFALNVCPDLTGFQNIVPCGIADKPVGSLAEFVPDVN-------------------LAQVQQQVAIAFAQVFGVKL 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5361.12784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUY1_ECTSI1.070e-11060.13Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus si... [more]
A0A6H5JUQ5_9PHAE1.240e-9459.19Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp... [more]
A0A835YUM8_9STRA8.080e-8165.97Lipoyl(octanoyl) transferase n=1 Tax=Tribonema min... [more]
A0A846A1P3_9CYAN6.120e-6860.31Octanoyltransferase n=1 Tax=Leptolyngbya sp. SIO4C... [more]
A0A251WGY3_9CYAN1.090e-6656.57Octanoyltransferase n=2 Tax=unclassified Alkalinem... [more]
UPI001A0E5DBD4.250e-6550.88Lipoyl(Octanoyl) transferase LipB n=1 Tax=Synechoc... [more]
A0A1Z4I5R9_9NOSO7.200e-6550.84Octanoyltransferase n=3 Tax=unclassified Nostoc Ta... [more]
A0A6P0QK32_9CYAN9.500e-6552.19Octanoyltransferase n=3 Tax=unclassified Microcole... [more]
UPI001CA754311.160e-6450.41lipoyl(octanoyl) transferase LipB n=1 Tax=Leptothe... [more]
A0A8J6WLX9_9CYAN1.570e-6450.85Octanoyltransferase n=4 Tax=unclassified Trichocol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5361contigH-paniculata_contig5361:7619..12104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.9
Seed ortholog evalue6.5e-97
Seed eggNOG ortholog2880.D7FUY1
KEGG rclassRC00039,RC00992,RC02867
KEGG koko:K03801
KEGG ReactionR07766,R07769
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.octanoyl transferase activity (acting on glycine-cleavage complex H protein)
EggNOG OGsCOG0321@1,KOG0325@2759
EC2.3.1.181
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size3974
Cds size1026
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5361.12784.1prot_H-paniculata_contig5361.12784.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5361 7695..9205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.2524223-UTR-H-paniculata_contig5361:7618..76941622930547.2524223-UTR-H-paniculata_contig5361:7618..7694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5361 7619..7694 +
1691481342.9368873-UTR-H-paniculata_contig5361:7618..76941691481342.9368873-UTR-H-paniculata_contig5361:7618..7694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5361 7619..7694 +
1622930547.3270774-UTR-H-paniculata_contig5361:9205..96651622930547.3270774-UTR-H-paniculata_contig5361:9205..9665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5361 9206..9665 +
1691481342.9675553-UTR-H-paniculata_contig5361:9205..96651691481342.9675553-UTR-H-paniculata_contig5361:9205..9665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5361 9206..9665 +
1622930547.3390362-UTR-H-paniculata_contig5361:9692..121041622930547.3390362-UTR-H-paniculata_contig5361:9692..12104Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5361 9693..12104 +
1691481342.97613-UTR-H-paniculata_contig5361:9692..121041691481342.97613-UTR-H-paniculata_contig5361:9692..12104Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5361 9693..12104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.2702065-CDS-H-paniculata_contig5361:7694..82281622930547.2702065-CDS-H-paniculata_contig5361:7694..8228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5361 7695..8228 +
1691481342.9483964-CDS-H-paniculata_contig5361:7694..82281691481342.9483964-CDS-H-paniculata_contig5361:7694..8228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5361 7695..8228 +
1622930547.2835333-CDS-H-paniculata_contig5361:8713..92051622930547.2835333-CDS-H-paniculata_contig5361:8713..9205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5361 8714..9205 +
1691481342.9578066-CDS-H-paniculata_contig5361:8713..92051691481342.9578066-CDS-H-paniculata_contig5361:8713..9205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5361 8714..9205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5361.12784.1

>prot_H-paniculata_contig5361.12784.1 ID=prot_H-paniculata_contig5361.12784.1|Name=mRNA_H-paniculata_contig5361.12784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
MRRKLYHTLIPWDKLKPRKKSLPKPAVPSSQQLSSSTAPTTSGNSTGTSS
SSPLARRRRRPCRVYSITGGLVPYEDAWIWQQRLLHERMAWQRQDHHVEG
HDVLLLLEHRSVYTLGRGSTLDNLRFNPADSICQHEVRRTDRGGEVTWHG
PGQLIGYPVLDLNYHKKDLHWYLRQLEEVVIRVLARYGLKGEREAEHTGV
WVEGAKIAAIGLNASRWITSHGFALNIHPDLAAFESIVPCGIHGRPVTRL
CNYSHDLIHDLGKPPTSQLTARECAELVSTVREEVLHGFGRVFGLDMEIL
EIDVGVRRGVESQIFPEACDQRLRERLKADSRRQLELVRRR*
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mRNA from alignment at H-paniculata_contig5361:7619..12104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5361.12784.1 ID=mRNA_H-paniculata_contig5361.12784.1|Name=mRNA_H-paniculata_contig5361.12784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4486bp|location=Sequence derived from alignment at H-paniculata_contig5361:7619..12104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGTGACAAGATGAATCAGCCGTCACAACACACCATACCAAAACCAGC
GCCTGCTACTCTGCGCTGCTGCATCCATGAGAAGGAAGCTGTACCACACC
CTCATTCCATGGGATAAATTGAAACCTAGGAAGAAATCATTACCAAAACC
AGCAGTACCATCGTCGCAGCAATTATCCAGCTCTACTGCGCCCACGACAT
CAGGCAATAGCACCGGCACCAGCAGCAGTAGCCCGCTAGCAAGACGAAGA
CGACGTCCATGCCGTGTCTACAGCATCACGGGCGGTCTCGTCCCCTACGA
AGATGCATGGATATGGCAGCAACGGCTGCTTCACGAGCGAATGGCCTGGC
AGCGGCAAGATCATCACGTCGAGGGGCATGACGTTCTGCTTCTCCTAGAA
CACCGATCGGTGTACACTCTTGGGCGGGGTTCAACGTTGGACAATTTGCG
CTTCAATCCGGCGGACTCGATCTGTCAGCACGAGGTGCGGAGAACAGACC
GGGGCGGAGAGGTGACCTGGCATGGGCCAGGGCAGTTGATCGGCTACCCA
GTGCTAGATTTAAACTATCACAAGAAAGATTTGCACTGGTATCTGCGACA
GCTTGAGGAGGTTAGTCTGCGTATTATTTAGGGTAGGGGTGGCAATAACT
ACAATAAAAACGGCGAGAGTTTTCAGCAAGGACAAATAATGGGACAACAA
TCGCGCCATAGCAGAGGTGACGAACGTACCGTACTGTTTTGAATTGTAAT
TGAGCAGTACCAGTTCGTGCGCTCAACTTGTATACGTGATATATACATGC
AACGGTCTGAGAAATTCGGTTTATCTTCCAGAGCTATTTAGCTTCGAGTA
TGAAAATTTGCAAGATACGAAGCCATTCAAAACGCGTGGCATGATATGAC
CCGTTGATTGACACCAATTTCACAAAAATAAAGGACCGTTGTTTGGACAA
ATCGTTTGAAGAATCAAGTCCGGCGAGGGAGCGCTTCCTCCGTGAATACA
ATCAAGTAGAAACGTGCCTGCCCTACACATGCTCCAGTACTCACGAAGCA
ACTTGTGCTCACACGCTGACAGCTACTTTTTATTTGTTTATTCAGGTGGT
AATCCGCGTATTGGCCCGGTACGGCTTGAAAGGAGAGCGAGAGGCAGAGC
ACACGGGGGTATGGGTGGAGGGCGCGAAGATTGCCGCCATCGGACTCAAC
GCGAGCCGCTGGATAACATCACACGGGTTCGCTCTTAACATTCATCCGGA
CCTTGCAGCATTCGAGAGTATCGTGCCGTGCGGCATTCACGGCCGTCCGG
TAACACGATTGTGCAATTATTCACATGACCTGATACACGATTTGGGCAAG
CCTCCAACTTCTCAACTGACCGCCAGAGAGTGTGCCGAGTTGGTGAGCAC
TGTACGCGAGGAAGTCCTGCATGGGTTTGGACGCGTGTTTGGCTTGGATA
TGGAGATCTTGGAAATTGATGTCGGTGTCCGAAGGGGAGTGGAATCCCAG
ATATTCCCCGAAGCGTGCGATCAGAGGTTGCGAGAGCGCTTGAAAGCAGA
TAGTAGGCGGCAGTTGGAACTCGTGCGACGGCGTTGAGTCTTTAAATATG
GCGACTGAATCTCCGCGGAACCATTAGTTGCTGCCGTTCCCCCTCGTTGT
CGGCGCTGTAGTTGGTGTACCCCGTTGAAATATCCTCACGCTGTACCTGT
TGTCCAAGTCAATTCATCAAGGCGTAGTTTGTTGAAACTTGGGACGGCGT
CGCCAACAAACGTTCACCCGTCGTTGATCGAGAGCACATCACGTGTTGTC
ATTGAATCTTCATGTGCGCGTAGGACCCGCGAGCGACTAATCGCCGGGAC
ACGGTACACCCATCACGCTTGATTTTTTCGGGTAGAAGTCTAATAGCCAT
TTTCCTGGTGTGCGCGAATTGTATTCAGCAAACGCCGGGTTTGGCATACG
ACCCCGTAAAAATGGGAATTTAGATATTACGAAGGCTCATTGTTGGTACC
TCGGCCATATCTACACCAATACAAAGTAAAATGTAACAAGTAATGGCGCA
TACGAATCGCATGAAAAATTGGGTCACGTAAAAAAAATGAAAAACATATT
CTCCGTCCCATGAGTGTGCGACGTTATGATTTCTCATTTCTTTTTCTATC
TTTCTTTCTATCCCAGACACAAAAAAAATAAAAATCTGTATCAGCAGCAT
CGAGAGGGAAGAAGCCTAAGCCCACGACCTTTTTACCTTGTTCCGATTCC
AGACCCATGCAGAACGCATGGAGTATTGTCTTGTCGGTCAACCCTTCGGT
TAAGCTCAAACCTAGGGTATATTGTGGGATAGCCGTCCAGGACCGCTTCG
GTCGCTGGGTTGTACGTGACCTGGCCGTTTTAGCATCCGGTTTTAGACTG
CACCCGCAAAGTGCAGAATCCTCACACGTTAAGACCCTTTATCTCAACTC
CTGTCCGATCATCGGCAAAGGTTACCCTCTAGCCGTGCCCTACCCGAAGG
CTTAGACTTCTCATTTCTTGTGTAGGCCATTTTCTCTACGAACACGAAGA
GTTTTTCGGTTATGTCTGTTTTGCAGTGAACCTATGGACGTAAACTTTAA
GAATAGCTATTCCGTTCTGGCATGTTGTTCCGAATATTTCGCGAGAAGGG
AAACAAAAAAATGATCCTTTTCAAATTCATTTTGAGTGGCTGCGCTCCGC
CCGGCGGCGGATGAAGTGTCCCCCATATCGTCATACAACATCTCAGCACC
TCCGACGCTCGTGCAGCCTCCAGACCGTCTGCGGCGCACGTTTCGCAACC
AATGTTACCACTCCAGCGAGTCAGGCATATTTCGCCGAGAGCCCATCAAT
CCGAGGTTAAAATTGCGAGCTGAGTGAGGAAGGTCGAAACGCGTTGGCTG
TACGGTAGGCTTTAGCGCTACCTTCCGATAAGAAACGGCTTCCGAAAGGC
GTTGGGCCAGAGTTGGCGGAGCAGTTTGGAGTTGGCAGCCAATATCCCAG
ACAACTTAAGGCGCGTGTACGAGATCAACTGGACCATGGCAACACTCTTT
CGCTGAGGCAAGCGTCACGAAGCGGGCGACCATCGAACTTCACACCGACA
AAGCACGCCACGATTAGAAGGGTTAACACCGCGAATCGAACCCTGAACGT
CGATCAACTGTTTGCCAAGCCAGCCGAAGTTGGTCTCGTAGCCGGAAGCT
CAAAGCTTCAGCGATGGCTCAAAGAGATGGGCGCTATGAGGGTGCAACGG
CGCATTACCCCATCTTTGTCGATGACGCACCGAAAACCGGGTAAACTTCA
TCCTGGACCAAGCAACAAGGAGCCGCATCACCTTCAAGACCTTCTTCCAA
ACACGTGACATCGACGAAGCGTGGTTTATCTAATTCGCGACAGGCATCAC
GCCCGCATGTTCCCCGAGTAGGAGAGGGTGGGGTCCACCAGAGTATCTCA
CATTCCCAAGGCGATGTTCATCTACGCCGTTTCGCGTCCAGTTCCTTCCC
GCGATTTCGACGGCAATACATGGCCGATCATGAAAAATTGGAACTAACTT
TTTCGATGGGAATGGAGTCCCATCGATTTTTCATTGAAAACTTCGAAAAT
GGTGCGACTTGATGGTAAACGCAAGGCTGATCATTGTGAAGAAAGCTTTG
TGCTGGAGGCGAAGGGAAGGTTGCATAGATCGCGCGTTGTGTGTTGCTTC
GTGGCCGCACGGCCGCTACTTTCGGCCCAACGACGAGGATTCCGTTTTTC
TTCCCTTTGAATGGTAAATAAAAGCGTTGACATGGCACCATTTTCGAAGT
TTTCAATGAAAAATCAATGGGACTTTGTTCCCATCGAAAAAGTTGGTTTC
CTTTTTTCATGAGCGGCTGTTAATATTGGAATATGGCGTGTTTGCGTCAT
CAAGCGGGCGCAGAGGAATTTGCCCCGGCGTGAACGGGGGCAGCAACACG
AGTTCGACGTGACCTTTGACGCCGAGTGGTATCAGGAGTGGTACAAGGAC
TCTTTTTTCCCAGCATTAAAGGAAAGATGCCGTGGTTGGAGGGTGGGAAA
GTGGTCGGGCAGCACGATGGAGTGGCCCCGACAAGGGGAAAGACACGCCG
TGGAAGCTCAACGAACTCGAGAGGGACGGGGGGTTCAGCGTCAATCTCGT
AACTCAGCCTGCGCAATCCTAAGACCTCAACATCAATCATTTGGGGCTCT
TTGCATCTCTGACAATTAGGGTTAGGAGGGAGCGTTACGGTACGATAGGT
AGCCTTGTGGAGGGGGTAAAGAGCATGTAGGATGCGGAAACATTGGAGAG
GGTGTAACAGAGCTTCTTTAAGCGGTACAGTCAGGTCTTGAATGCCCTTG
GAGGTAACGATTTCGAGGTACAGCACACCGAGATCAAGAGAAGGCAGCGT
ACGGGAAGTCTGTCAAAATCAGTCGAAATCGACCGAGGGGAGGGCCTTTC
GACGCGATGATAGAATGGTGGATTAATGGGAGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5361:7619..12104+

>mRNA_H-paniculata_contig5361.12784.1 ID=mRNA_H-paniculata_contig5361.12784.1|Name=mRNA_H-paniculata_contig5361.12784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at H-paniculata_contig5361:7619..12104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAGGAAGCTGTACCACACCCTCATTCCATGGGATAAATTGAAACC
TAGGAAGAAATCATTACCAAAACCAGCAGTACCATCGTCGCAGCAATTAT
CCAGCTCTACTGCGCCCACGACATCAGGCAATAGCACCGGCACCAGCAGC
AGTAGCCCGCTAGCAAGACGAAGACGACGTCCATGCCGTGTCTACAGCAT
CACGGGCGGTCTCGTCCCCTACGAAGATGCATGGATATGGCAGCAACGGC
TGCTTCACGAGCGAATGGCCTGGCAGCGGCAAGATCATCACGTCGAGGGG
CATGACGTTCTGCTTCTCCTAGAACACCGATCGGTGTACACTCTTGGGCG
GGGTTCAACGTTGGACAATTTGCGCTTCAATCCGGCGGACTCGATCTGTC
AGCACGAGGTGCGGAGAACAGACCGGGGCGGAGAGGTGACCTGGCATGGG
CCAGGGCAGTTGATCGGCTACCCAGTGCTAGATTTAAACTATCACAAGAA
AGATTTGCACTGGTATCTGCGACAGCTTGAGGAGATGAGAAGGAAGCTGT
ACCACACCCTCATTCCATGGGATAAATTGAAACCTAGGAAGAAATCATTA
CCAAAACCAGCAGTACCATCGTCGCAGCAATTATCCAGCTCTACTGCGCC
CACGACATCAGGCAATAGCACCGGCACCAGCAGCAGTAGCCCGCTAGCAA
GACGAAGACGACGTCCATGCCGTGTCTACAGCATCACGGGCGGTCTCGTC
CCCTACGAAGATGCATGGATATGGCAGCAACGGCTGCTTCACGAGCGAAT
GGCCTGGCAGCGGCAAGATCATCACGTCGAGGGGCATGACGTTCTGCTTC
TCCTAGAACACCGATCGGTGTACACTCTTGGGCGGGGTTCAACGTTGGAC
AATTTGCGCTTCAATCCGGCGGACTCGATCTGTCAGCACGAGGTGCGGAG
AACAGACCGGGGCGGAGAGGTGACCTGGCATGGGCCAGGGCAGTTGATCG
GCTACCCAGTGCTAGATTTAAACTATCACAAGAAAGATTTGCACTGGTAT
CTGCGACAGCTTGAGGAGGTGGTAATCCGCGTATTGGCCCGGTACGGCTT
GAAAGGAGAGCGAGAGGCAGAGCACACGGGGGTATGGGTGGAGGGCGCGA
AGATTGCCGCCATCGGACTCAACGCGAGCCGCTGGATAACATCACACGGG
TTCGCTCTTAACATTCATCCGGACCTTGCAGCATTCGAGAGTATCGTGCC
GTGCGGCATTCACGGCCGTCCGGTAACACGATTGTGCAATTATTCACATG
ACCTGATACACGATTTGGGCAAGCCTCCAACTTCTCAACTGACCGCCAGA
GAGTGTGCCGAGTTGGTGAGCACTGTACGCGAGGAAGTCCTGCATGGGTT
TGGACGCGTGTTTGGCTTGGATATGGAGATCTTGGAAATTGATGTCGGTG
TCCGAAGGGGAGTGGAATCCCAGATATTCCCCGAAGCGTGCGATCAGAGG
TTGCGAGAGCGCTTGAAAGCAGATAGTAGGCGGCAGTTGGAACTCGTGCG
ACGGCGTTGAGTGGTAATCCGCGTATTGGCCCGGTACGGCTTGAAAGGAG
AGCGAGAGGCAGAGCACACGGGGGTATGGGTGGAGGGCGCGAAGATTGCC
GCCATCGGACTCAACGCGAGCCGCTGGATAACATCACACGGGTTCGCTCT
TAACATTCATCCGGACCTTGCAGCATTCGAGAGTATCGTGCCGTGCGGCA
TTCACGGCCGTCCGGTAACACGATTGTGCAATTATTCACATGACCTGATA
CACGATTTGGGCAAGCCTCCAACTTCTCAACTGACCGCCAGAGAGTGTGC
CGAGTTGGTGAGCACTGTACGCGAGGAAGTCCTGCATGGGTTTGGACGCG
TGTTTGGCTTGGATATGGAGATCTTGGAAATTGATGTCGGTGTCCGAAGG
GGAGTGGAATCCCAGATATTCCCCGAAGCGTGCGATCAGAGGTTGCGAGA
GCGCTTGAAAGCAGATAGTAGGCGGCAGTTGGAACTCGTGCGACGGCGTT
GA
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