mRNA_H-paniculata_contig5341.12757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5341.12757.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE) HSP 1 Score: 1011 bits (2615), Expect = 0.000e+0 Identity = 592/992 (59.68%), Postives = 679/992 (68.45%), Query Frame = 1
Query: 1 SYDSINKPRPYWDVAREVVSKGYSMPKKKVVPLLRELCIRIGDNNVCDGAFFGALLAILRSAKDGDWDGKAVRLVHFFIRGMVTAEGDTDGRMLGSYWEGRGITPGQILQAVECFRYESEHRSAVRRIPAFQTMATLCQLAAVAEIGGQPSPVQVLREATVAPLQSFQAQERPERGGK--GRSYRQRLEAFQESLQISSSIFSAVRRCPGLARDRAILPTVLQGCCSENSLAARHSFAVLAEQAAESPAIVSQALLNKAMLLPTTVGMLQAPEGLASSGKEPNLSDALACVYYLRSLKTLAFSEMLDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVDAQRESRDADIFRRVVDRIKLCVEEATSPTTAAASSV-----------PESSISV------DRGNKKRGKVTEAEASGVGAG------GAAGAQCNWALAHAACRVCRVVGRTFQVAISYETIQSQNREQGAAARVTGSPGIFGATAAPATRPSSFNAESNWEGYGGVTPSPS-------SSSAAVVPTEGGGSLDASAG-GSAFNLLGLPPSPPPRSGVVE---------------------------------EQNTAAIRDLCRALRQHKLLESPHLHVRSLALEAMFLLVPDPSPVDPQLRGLWDWLQQRVQQCPSTLPDSVLSELVDTLLTRVHCSAASREQVIPIALALTESFMYQVPSEEMGRCVLRAWCQCVGYGGRARESVLQSVYRLLDRCRENLILLYTDSNGTIGAADVGGAANVEGDGG-GGKKRHVVGAPSEDWTRLMTQPHTSTASATSNSANLSPGKNGSRVGGGSNAENTRGLMLEGNTSILGGEEASRWAPGTNNAGGAQRFSLHFLKARGAATRLKRSAYWFLGEYCGQLSGSVPEPSAQSDIKSDTTLDKNDNDLLGNWSS------SSAGNKFDVGLEGGDAGAVAIPHPVVAAMNGATVSILLRLKHAAMFEDLQVTTDWAS 2757
SY+ +N+PR YW VA EVV+KG +MPKK++VPLLRELCIRIGD VCDGAFFGALL IL SAK+GDWDGKAVRLVHFF+RGMVT +GDT+GR+LGS+WEGRGIT QIL A+ECFR ESEHRS+VR+IPAF T+ATLCQLA+V+ +GGQPSPV+VLRE T+ PL+S QAQERPERGGK GR+ RQR EAF+ESLQ+S++IFSA+RRCP LARD++ILP VL GCCSEN LAARH+FA+LA+ A +SP +VSQ LL+KAML+PTTVGMLQAP GLA+SG EPNL+D+LACVYYLR++K LAF+E LDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLV+AQRESRDADIFRRVVDRIK+CVEEAT+P TAAA++ P S + D NKK+ AG GA+ A CNWALAHAACRVCRVVGRTFQVAISY+T+Q+QNR A V GS G A SS E G G P PS S +G + G GSAFNLLGLPPSP PRSG+ + AAIRDLCRAL+QH+LLESPHLHVRSLALEAMFLLVPDPSP+DPQLRGLWDWLQQRV+QCPSTLPD+VLSELVDTLLTRV CSA SRE+VIPIALALTESFMYQVPSEEMGRCVLRAWCQC GYGGRARESVLQSVYR+LDR I L D+ A+ A+ G GG RHV G SEDWTR QP ST A G +E R L +L+A+ AATRLKRSA+WFLGEYC QL+G+ P S+Q+ ++ N+LL W+S + GL A A A HPVV+ MNGAT+SIL+RLKHAAMFED Q + AS
Sbjct: 81 SYELVNRPRAYWTVAAEVVAKGATMPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILGSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGITQRQILDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAASRPGSPTELPPAAPADLSNKKKKLXXXXXXXXXXAGNGPAGVGASEAYCNWALAHAACRVCRVVGRTFQVAISYQTMQNQNR-----AGVDGSSGGSSTVLASPAATSSVGGERRGSGTSGPRP-PSVNARHGFSEGLLASGRDGSQPVTPEVGTGSAFNLLGLPPSPAPRSGITRAPSAWGPTAGXXXXXXXXXXXXXXRRLARDGGRDGRAAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRS----IALPPDNPRAAFASAANNRASTGSVGDRGGAARHVRGMASEDWTR---QP-ISTGGAQ-----------------GDPSETPR---------------------------------LKYLRAKSAATRLKRSAFWFLGEYCRQLTGA-PAESSQNHDQTPPPAKTGGNELLDVWTSPVPSPTKGGMGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCAS 1007
BLAST of mRNA_H-paniculata_contig5341.12757.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI) HSP 1 Score: 987 bits (2552), Expect = 0.000e+0 Identity = 576/935 (61.60%), Postives = 667/935 (71.34%), Query Frame = 1
Query: 73 MPKKKVVPLLRELCIRIGDNNVCDGAFFGALLAILRSAKDGDWDGKAVRLVHFFIRGMVTAEGDTDGRMLGSYWEGRGITPGQILQAVECFRYESEHRSAVRRIPAFQTMATLCQLAAVAEIGGQPSPVQVLREATVAPLQSFQAQERPERGGK--GRSYRQRLEAFQESLQISSSIFSAVRRCPGLARDRAILPTVLQGCCSENSLAARHSFAVLAEQAAESPAIVSQALLNKAMLLPTTVGMLQAPEGLASSGKEPNLSDALACVYYLRSLKTLAFSEMLDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVDAQRESRDADIFRRVVDRIKLCVEEATSPTTAAASSV-----------PESSISV------DRGNKKRGKVTEAE--------ASGVGAGGAAGAQCNWALAHAACRVCRVVGRTFQVAISYETIQSQNREQGAAARVTGSPGIFGATAAPATRPSSFNAESNWEGYGGVTPSPSSSSAAVVPTEGGGSLDASAGGSAFNLLGLPPSPPPRSG-VVEEQNTAAIRDLCRALRQHKLLESPHLHVRSLALEAMFLLVPDPSPVDPQLRGLWDWLQQRVQQCPSTLPDSVLSELVDTLLTRVHCSAASREQVIPIALALTESFMYQVPSEEMGRCVLRAWCQCVGYGGRARESVLQSVYRLLDRCRENLILLYTDSNGTIGAADVGGAANVEGDGG-GGKKRHVVGAPSEDWTRLMTQPHTSTASATSNSANLSPGKNGSRV--GGGSNAENTRGLMLEGNTSILGGEEASRWA-PGTNNAGG--AQRFSLHFLKARGAATRLKRSAYWFLGEYCGQLSGSVPEPSAQSDIKSDTTLDKNDNDLLGNWSS------SSAGNKFDVGLEGGDAGAVAIPHPVVAAMNGATVSILLRLKHAAMFEDLQVTTDWAS 2757
MPKK++VPLLRELCIRIGD VCDGAFFGALL ILRSAK+GDWDGKAVRLVHFF+RGMVT +GDT+GR+LGS+WEGRGI+P QI+ A+ECFR ESEHRS+VR+IPAF T+ATLCQLA+V+ +GGQPSPV+VLRE T+ PL+S QAQERPERGGK GR+ RQR EAF+ESLQ+S++IFSA+RRCP LARD++ILP VL GCCSEN LAARH+FA+LA+ A +SP +VSQ LL+KAML+PTTVGMLQAP GLAS+G EPNL+D+LACVYYLR++K LAF+ LDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLV+AQRESRDADIFRRVVDRIK+CVEEAT+P TAAA++ P S + D G+KK +G GA+ A CNWALAHAACRVCRVVGRTFQVAI + + AAA AAP +W+ S S AA P P +P S VVEEQNTAAIRDLCRAL+QH+LLESPHLHVRSLALEAMFLLVPDPSP+DPQLRGLWDWLQQRV+QCPSTLPD+VLSELVDTLLTRV CSA SRE+VIPIALALTESFMYQVPSEEMGRCVLRAWCQC GYGGRARESVLQSVYR+LDR I L D+ T A+ A+ G GG RHV G SEDWTR QP ST A + PG+ + GGGS+ + L G + ILGG+EASRW G AGG ++ L +L+ + AATRLKRSA+WFLGEYC QL+G+ P S+Q+ +S + N+LL W+S + GL A A A HPVV+ MNGAT+SIL+RLKHAAMFED Q + AS
Sbjct: 1 MPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGISPRQIIDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLASAGGEPNLADSLACVYYLRAIKALAFAGALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAASRPGSPTELPPAAPADLGHKKXXXXXXXXXXXXXXXAGNGPAGVGASEAHCNWALAHAACRVCRVVGRTFQVAIRPCRTKIELVSTAAAA-----------VAAP-----------SWQARLRQQASAESVVAAGPPAR----------------APRPSTPATASRKVVEEQNTAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRS----IALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRGMASEDWTR---QP-ISTGGAQGSEDGSQPGRIPPTIVSGGGSSGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPRLKYLRTKSAATRLKRSAFWFLGEYCCQLTGA-PAESSQNPDQSPPPAETGGNELLDVWTSPVPSPTKGGTGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCAS 888
BLAST of mRNA_H-paniculata_contig5341.12757.1 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.130e-45 Identity = 185/582 (31.79%), Postives = 233/582 (40.03%), Query Frame = 1
Query: 526 GGKGRSYRQRLEAFQESLQISSSIFSAVRRCPGLARDRAILPTVLQGCCSENSLAARHSFAVLAEQAAE---------------------------------------------------------SPAIVSQALLNKAMLLPTTVGMLQAPEGLASSGKEPNLSDALACVYYLRSLKTLAFSEMLDDTMRLDMYRTMVSSVSDARHRVALEA------------------------------------MQCLLDHPRAWELLVDAQRESRDADIFRRVVDRIKLCVEEATS----PTTAAASSVPESSISVDRGNKKRGKVTEAEASGVGAGG-------------------------------AAGAQCNWALAHAACRVCRVVGRTFQVAISYETIQSQNREQGAAARVTGSPGIFGATAAPATRPSSFNAESNWEGYGGVTPSPSSSSAAVVPTEGGGSLDASAGGSAFNLLGLPPSPPP--------------------RSGVVEEQNTAAIRDLCRALRQHKLLESPHLHVRSLALEAMFLLVPDPSPVDPQLRGLWDWLQQRVQQCPSTLPDSVL 1827
GG +++R E +E L +S + SAVRR L R ++LP VL+ C S N++ ARH+FAVL EQAA P V++ + +L PTTV A G +PNL D LACVYYLR LKTL F+ L+ RLD YRT+ +SVSD RHRVALEA MQCL+DH RAW LLVDAQRESRDAD+FRRVVD ++ C+ A P AA A GA +W LAHAACR R VG+T Q AIS+ET+ AA +E+ + G G SPS V P GG L LL LP +P + E N AAIRDLCRA+ H L+ PH H AMFLLVPDPS DP+L+ +W +Q +++ CP++LP++ L
Sbjct: 386 GGGRKAHRGEAEV-KEHLLLSRVVLSAVRRSAALRRRASLLPRVLEACRSPNAVTARHAFAVLLEQAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSMVLAEXXXXXXXXXXXXXXXAMDPKAVAEGVYP--LLQPTTV----AAAGALEIHNQPNLEDPLACVYYLRVLKTLVFAPELEAQSRLDFYRTIANSVSDTRHRVALEASDVFNLNFNPVPHTVAGATAVGSLTAQSWNYRGTAAMQCLMDHERAWTLLVDAQRESRDADLFRRVVDALRRCLAAAAGVDLLPGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAP-HWPLAHAACRAARAVGQTLQKAISFETM--------AARAXXXXXXXXXXXXXXXXXXXXXXSEAVFFGAG----SPSGR-LPVSPRSGGSPLSP--------LLDLPSTPHSVAAXXXXXXXXSTYNSPHITTADAAEASNMAAIRDLCRAISGHGFLDCPHRH-------AMFLLVPDPSHRDPELQEMWAEVQMKMEACPASLPEASL 931 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5341.12757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5341.12757.1 >prot_H-paniculata_contig5341.12757.1 ID=prot_H-paniculata_contig5341.12757.1|Name=mRNA_H-paniculata_contig5341.12757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=919bp SYDSINKPRPYWDVAREVVSKGYSMPKKKVVPLLRELCIRIGDNNVCDGAback to top mRNA from alignment at H-paniculata_contig5341:4721..14017+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5341.12757.1 ID=mRNA_H-paniculata_contig5341.12757.1|Name=mRNA_H-paniculata_contig5341.12757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9297bp|location=Sequence derived from alignment at H-paniculata_contig5341:4721..14017+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5341:4721..14017+ >mRNA_H-paniculata_contig5341.12757.1 ID=mRNA_H-paniculata_contig5341.12757.1|Name=mRNA_H-paniculata_contig5341.12757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5514bp|location=Sequence derived from alignment at H-paniculata_contig5341:4721..14017+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |