mRNA_H-paniculata_contig53250.12735.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 128 bits (322), Expect = 1.950e-34 Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
K GVC+ CE+ K +K+ T ER E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KS+++ LK++ +D+ + N LR LRSD G EYTG F+ FC G++QD + Y PQ NGVAE+SW
Sbjct: 33 KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSW 174
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 127 bits (319), Expect = 6.550e-33 Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
K GVC CE+ K +K+ T ER E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++ LK++ +D+ + N LR LRSD G EYTG F+ FC G++QD + Y PQ NG+AE+SW
Sbjct: 53 KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSW 194
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC) HSP 1 Score: 123 bits (308), Expect = 2.420e-32 Identity = 64/142 (45.07%), Postives = 94/142 (66.20%), Query Frame = 1
Query: 7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARAN-NLRIKHL---RSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
K GV CE+ K +K+ T ER E LEL+HTD+ GP++ +S GG R+AI F D+Y+R R VY ++ KSE++ LK++ +D++ + + ++K L RSD G EYTG F+ FC +G++QD + Y PQ NGVAE+SW
Sbjct: 33 KPGVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDISVLHRDSKVKTLIGLRSDNGGEYTGINFKHFCKNNGIRQDFGIPYGPQDNGVAEKSW 174
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.290e-32 Identity = 69/144 (47.92%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
K GVC CE+ K +K+ T ER E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++ LK++ +D+ + N LR LRSD G EYTG F+ FC G++QD + Y PQ NGVAE+SW
Sbjct: 53 KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSW 194
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.870e-31 Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
K GVC CE+ K +K+ T ER E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++ LK++ +D+ + N LR LRSD G EYTG F+ FC G++QD + Y PQ NG+AE+SW
Sbjct: 99 KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGVDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSW 240
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.400e-31 Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
K G+C+ CE+ K +K+ T ER E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++ LK++ +D+ + N LR LRSD G EYTG F+ FC G++QD + Y PQ NG+AE+SW
Sbjct: 103 KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSW 244
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA) HSP 1 Score: 124 bits (311), Expect = 6.200e-31 Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 1
Query: 7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLR----IKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
K C CE+ K +K+ T ER E LELVHTD+ GP++ +S GG R+AI F D+Y+R R VYT+R+KSE++ LK++ +D + + R + LRSD G EYTG F+ FC G++QD + Y PQ N AE+SW
Sbjct: 1 KPSACGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNSAAEKSW 142
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: A0A7D9IUM0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUM0_PARCT) HSP 1 Score: 124 bits (311), Expect = 6.810e-31 Identity = 62/142 (43.66%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 1 SGKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSWRS 423
+GKL C AC +G A + P K E ++T LELVH+D+AGP+ +SFGG ++ + F+D+YSR VY ++ KSE + K+++ VA +IK LR+D G EYT F+ F + G++ + +V Y+PQQNGVAER R+
Sbjct: 292 TGKLSFCEACAEGMAHRAPFKQVGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVYPMKYKSEVLVKFKEWKAAVANQAECKIKTLRTDNGGEYTSTEFQDFLKKKGIRHETTVPYSPQQNGVAERMSRT 433
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF) HSP 1 Score: 122 bits (305), Expect = 7.060e-31 Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 1
Query: 4 GKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAER 411
GK VC C GK + P R E LEL+HTD+ GP+D S R+ I+F+D+++RM VY +RQKSE + K+F+ V + + IK LRSD+G+EYT K F FC + G+++ ++V YTPQQNGV ER
Sbjct: 10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTER 146
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF) HSP 1 Score: 122 bits (306), Expect = 1.610e-30 Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 1
Query: 4 GKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAER 411
GK VC C GK + P R E LEL+HTDI GP+D S R+ I+F+D+++RM VY +RQKSE + K+F+ V + + IK LRSD+G+EYT K F FC + G+++ ++V YTPQQNGV ER
Sbjct: 10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTER 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig53250.12735.1 >prot_H-paniculata_contig53250.12735.1 ID=prot_H-paniculata_contig53250.12735.1|Name=mRNA_H-paniculata_contig53250.12735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp SGKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVDKSFGGCback to top mRNA from alignment at H-paniculata_contig53250:182..604- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig53250.12735.1 ID=mRNA_H-paniculata_contig53250.12735.1|Name=mRNA_H-paniculata_contig53250.12735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at H-paniculata_contig53250:182..604- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig53250:182..604- >mRNA_H-paniculata_contig53250.12735.1 ID=mRNA_H-paniculata_contig53250.12735.1|Name=mRNA_H-paniculata_contig53250.12735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig53250:182..604- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |