mRNA_H-paniculata_contig5322.12729.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5322.12729.1
Unique NamemRNA_H-paniculata_contig5322.12729.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5322.12729.1 vs. uniprot
Match: D8LIC5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.090e-10
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  196 NHFPAGKDLVLGMLNKDVGTRYTAKDVLRHPWITQRVRRQDEHPEHFEF 342
            N    GKDLVLGMLNKD   RYTAK +L HPWITQR  R++EHPE FEF
Sbjct:  718 NFSEDGKDLVLGMLNKDREKRYTAKAILAHPWITQRECRREEHPELFEF 766
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BLAST of mRNA_H-paniculata_contig5322.12729.1 vs. uniprot
Match: A0A6H5L0T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.860e-10
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  196 NHFPAGKDLVLGMLNKDVGTRYTAKDVLRHPWITQRVRRQDEHPEHFEF 342
            N    GKDLVLGMLNKD   RYTAK +L HPWITQR  R++EHPE FEF
Sbjct: 1192 NFSEDGKDLVLGMLNKDREKRYTAKAILAHPWITQRECRREEHPELFEF 1240
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BLAST of mRNA_H-paniculata_contig5322.12729.1 vs. uniprot
Match: A0A836CC15_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC15_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.500e-5
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  214 KDLVLGMLNKDVGTRYTAKDVLRHPWITQRVRRQDEHPEHFEF 342
            +DL+LG+LNKD+  R +AK+ L HPWI  RV R D  PE F+F
Sbjct:  569 RDLMLGLLNKDIKRRMSAKEALLHPWILSRVDRMDTEPETFDF 611
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5322.12729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIC5_ECTSI5.090e-1069.39N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5L0T4_9PHAE5.860e-1069.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CC15_9STRA3.500e-555.81Kinase-like domain-containing protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5322contigH-paniculata_contig5322:934..2718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog2880.D8LIC5
KEGG koko:K08794,ko:K08808
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons2
Model size1009
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5322.12729.1prot_H-paniculata_contig5322.12729.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5322 1018..2054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.9589517-UTR-H-paniculata_contig5322:933..10171622930539.9589517-UTR-H-paniculata_contig5322:933..1017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5322 934..1017 +
1691481339.5631094-UTR-H-paniculata_contig5322:933..10171691481339.5631094-UTR-H-paniculata_contig5322:933..1017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5322 934..1017 +
1622930540.043999-UTR-H-paniculata_contig5322:2054..27181622930540.043999-UTR-H-paniculata_contig5322:2054..2718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5322 2055..2718 +
1691481339.601548-UTR-H-paniculata_contig5322:2054..27181691481339.601548-UTR-H-paniculata_contig5322:2054..2718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5322 2055..2718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.9974306-CDS-H-paniculata_contig5322:1017..12331622930539.9974306-CDS-H-paniculata_contig5322:1017..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5322 1018..1233 +
1691481339.5761352-CDS-H-paniculata_contig5322:1017..12331691481339.5761352-CDS-H-paniculata_contig5322:1017..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5322 1018..1233 +
1622930540.0189335-CDS-H-paniculata_contig5322:2009..20541622930540.0189335-CDS-H-paniculata_contig5322:2009..2054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5322 2010..2054 +
1691481339.59171-CDS-H-paniculata_contig5322:2009..20541691481339.59171-CDS-H-paniculata_contig5322:2009..2054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5322 2010..2054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5322.12729.1

>prot_H-paniculata_contig5322.12729.1 ID=prot_H-paniculata_contig5322.12729.1|Name=mRNA_H-paniculata_contig5322.12729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MSIIIIIIIIIIMLACQVKFVSFHGTRSFYLFCIRNNNHFPAGKDLVLGM
LNKDVGTRYTAKDVLRHPWITQRVRRQDEHPEHFEF*
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mRNA from alignment at H-paniculata_contig5322:934..2718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5322.12729.1 ID=mRNA_H-paniculata_contig5322.12729.1|Name=mRNA_H-paniculata_contig5322.12729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1785bp|location=Sequence derived from alignment at H-paniculata_contig5322:934..2718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAACAGTATGCCCATCTCAAACATTCGAGTAAATTTTTCCATAATTG
CCAATAACGCACCTAACTGAAACCCCTTCAAAACATGTCCATCATCATCA
TCATCATCATCATTATCATCATGTTGGCGTGTCAAGTAAAGTTCGTTTCT
TTTCATGGCACCCGCTCATTTTATCTTTTTTGTATCCGTAATAATAATCA
CTTTCCTGCAGGAAAGGACCTGGTGCTTGGCATGCTCAACAAGGACGTAG
GGACTCGGTATACGGCCAAAGATGTGCTTCGACACCCGTGGATAACGCAG
GTGAGCAATGATTTAGATTCTGCTTTACAAGGCTGAACCCGGGGTTGCCC
TCGGGTGGAGAAGTTAGAGGGGAGGATCGTCCTCATGATGAAGGGCAAAT
CCTCTTAGGTCAAACCATAAAAGGTAAACGCCCGCGGAGTGTGTTACTAA
TTTGAATGACATTCAGGCCGAAAACACACAGAACTCCTAGCTTGCAAGGC
TGCGCGAACCAGACGTAAACGTTTGCGGCGTGTTTCACGTTCTATTCACA
TATATGTCTTGACGCCTTTTTCATCGTGGAAAATCGAGTTGAAGTAACCG
GCGCCGGGTACAGACCAAATTAAGAGACAAGAAACAGAATGTAGCTAATG
CGACAAAAAATTAGAACATGAAGTAACGATGAGTGCGCTAGGCCGGTCAT
CGCGGAATGGTGACCCTGGAAGAAACAGCCCGTATCGTATGTGGTATGCC
CTATTCGGTACATTTTCGTATCGTCATGACCCGCTTGTCATGACCCTGGG
CAAGGTGGTTGTCTCTGCTAGAACGTTGTCGAGCTGCTTGCCCACGCCTA
ACGTGGGATGAATCTGCATTTCCTTGGCATGTGAGTCGATTTTTCGACTC
ATAGCCGTACCGGGACACGTAGGTGAATTACCCCTCCTAATTCTTGCTCG
CAGTAGGGCTGGATGTTCGCTTAACAGGCGGTTTCTTTTTAACAAGCATT
AATCTTTACCGCCCCTCCACTCGTCGTGTGCGTTCGTTTCATTGCTGCGT
GTGATCCATGTGTGTGCTTGCCGCAGCGGGTGCGTCGACAAGATGAACAT
CCGGAGCATTTCGAGTTCTGAGCTTCTTAAGATTCAGACGGGCATCTCGT
CGGACTGTATTTTCATTGTGCCTCACACACACGAGCGCTGCGTACACACG
AATGTATCCTCTTTTTACCCCCCGGCGTTTTTCCCCGACCAAATGCCATA
TTAGGTAGAGGTCGAGCAACGGGTCTGTCTGTGCTTCTGTGGGACAGCCG
TGTGGTGTCCGTTGCTCGAGTGTCGGGACGAGCGGAGATTGACGCTAGAG
TTATCATGCAGGAGCCTTTCTTTTTTTTCTTTGTTCGTCTTTTTTGTCTT
TTTTTTTTTTTTCCCCTGTTTTTTTGGGAACCACGATACGTCGTGTAAGG
GATGGAGGGTGGGGGGGCGTGGTGAGGTCGAGAAGTGGGGAACGAGTTTC
TCCTTGTGCTAGTCGCACGGTCTGTTTTGTCTCATGTGTTGTGTGTTGCG
TGTTGTTTGCTTTCCTTAGACTTATTTATCCCCGACCCCGCCCCCCGTCC
CCCCTTCGTGTAGGCTAGACCCACTTTGGATACCGAAAATGCGCAATTTG
CGCGCCTGCTTCGATTTTGAACGGACCAAGCAGAACTGGTTGACGTTCAG
AAAAAATGCCCAGATTGAAGTTTGTGTGTGTTTTGTCTCTTGTGTCATGA
TATTTTTTATGAGAAGTTATATAAACCATGGGTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5322:934..2718+

>mRNA_H-paniculata_contig5322.12729.1 ID=mRNA_H-paniculata_contig5322.12729.1|Name=mRNA_H-paniculata_contig5322.12729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig5322:934..2718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCATCATCATCATCATCATCATCATTATCATCATGTTGGCGTGTCA
AGTAAAGTTCGTTTCTTTTCATGGCACCCGCTCATTTTATCTTTTTTGTA
TCCGTAATAATAATCACTTTCCTGCAGGAAAGGACCTGGTGCTTGGCATG
CTCAACAAGGACGTAGGGACTCGGTATACGGCCAAAGATGTGCTTCGACA
CCCGTGGATAACGCAGATGTCCATCATCATCATCATCATCATCATTATCA
TCATGTTGGCGTGTCAAGTAAAGTTCGTTTCTTTTCATGGCACCCGCTCA
TTTTATCTTTTTTGTATCCGTAATAATAATCACTTTCCTGCAGGAAAGGA
CCTGGTGCTTGGCATGCTCAACAAGGACGTAGGGACTCGGTATACGGCCA
AAGATGTGCTTCGACACCCGTGGATAACGCAGCGGGTGCGTCGACAAGAT
GAACATCCGGAGCATTTCGAGTTCTGACGGGTGCGTCGACAAGATGAACA
TCCGGAGCATTTCGAGTTCTGA
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