mRNA_H-paniculata_contig5320.12728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5320.12728.1
Unique NamemRNA_H-paniculata_contig5320.12728.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5320.12728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5320contigH-paniculata_contig5320:6245..6587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5320.12728.1prot_H-paniculata_contig5320.12728.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5320 6258..6584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.867438-UTR-H-paniculata_contig5320:6244..62571622930539.867438-UTR-H-paniculata_contig5320:6244..6257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5320 6245..6257 +
1691481339.5359135-UTR-H-paniculata_contig5320:6244..62571691481339.5359135-UTR-H-paniculata_contig5320:6244..6257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5320 6245..6257 +
1622930539.8994746-UTR-H-paniculata_contig5320:6584..65871622930539.8994746-UTR-H-paniculata_contig5320:6584..6587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5320 6585..6587 +
1691481339.552549-UTR-H-paniculata_contig5320:6584..65871691481339.552549-UTR-H-paniculata_contig5320:6584..6587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5320 6585..6587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.8834906-CDS-H-paniculata_contig5320:6257..65841622930539.8834906-CDS-H-paniculata_contig5320:6257..6584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5320 6258..6584 +
1691481339.5447648-CDS-H-paniculata_contig5320:6257..65841691481339.5447648-CDS-H-paniculata_contig5320:6257..6584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5320 6258..6584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5320.12728.1

>prot_H-paniculata_contig5320.12728.1 ID=prot_H-paniculata_contig5320.12728.1|Name=mRNA_H-paniculata_contig5320.12728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MFFQDPPLEKSTLVYRKTLLSKLEHTASQPAPAIMCYHAMSIYRNEYYLL
HCISLWFTALSPYWGWINEAAHVQVVERTWMYVFSMGNYSENISQPALHQ
RIDSVCSQ*
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mRNA from alignment at H-paniculata_contig5320:6245..6587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5320.12728.1 ID=mRNA_H-paniculata_contig5320.12728.1|Name=mRNA_H-paniculata_contig5320.12728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=343bp|location=Sequence derived from alignment at H-paniculata_contig5320:6245..6587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATGCTGTGTGATGTTCTTTCAAGACCCTCCATTGGAAAAATCTACAT
TAGTGTACAGAAAAACCCTCCTGAGCAAACTGGAGCACACAGCAAGTCAG
CCAGCGCCCGCAATTATGTGTTACCATGCCATGAGCATCTACCGTAATGA
ATATTATCTGCTTCACTGCATTTCCCTATGGTTCACTGCGCTCTCACCCT
ATTGGGGATGGATAAACGAAGCAGCTCACGTACAAGTAGTAGAACGAACT
TGGATGTACGTATTTTCGATGGGAAACTATTCCGAAAATATTTCCCAACC
CGCTTTACATCAGCGCATCGACTCTGTTTGTTCTCAGTAATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5320:6245..6587+

>mRNA_H-paniculata_contig5320.12728.1 ID=mRNA_H-paniculata_contig5320.12728.1|Name=mRNA_H-paniculata_contig5320.12728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig5320:6245..6587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTTCAAGACCCTCCATTGGAAAAATCTACATTAGTGTACAGAAA
AACCCTCCTGAGCAAACTGGAGCACACAGCAAGTCAGCCAGCGCCCGCAA
TTATGTGTTACCATGCCATGAGCATCTACCGTAATGAATATTATCTGCTT
CACTGCATTTCCCTATGGTTCACTGCGCTCTCACCCTATTGGGGATGGAT
AAACGAAGCAGCTCACGTACAAGTAGTAGAACGAACTTGGATGTACGTAT
TTTCGATGGGAAACTATTCCGAAAATATTTCCCAACCCGCTTTACATCAG
CGCATCGACTCTGTTTGTTCTCAGTAAATGTTCTTTCAAGACCCTCCATT
GGAAAAATCTACATTAGTGTACAGAAAAACCCTCCTGAGCAAACTGGAGC
ACACAGCAAGTCAGCCAGCGCCCGCAATTATGTGTTACCATGCCATGAGC
ATCTACCGTAATGAATATTATCTGCTTCACTGCATTTCCCTATGGTTCAC
TGCGCTCTCACCCTATTGGGGATGGATAAACGAAGCAGCTCACGTACAAG
TAGTAGAACGAACTTGGATGTACGTATTTTCGATGGGAAACTATTCCGAA
AATATTTCCCAACCCGCTTTACATCAGCGCATCGACTCTGTTTGTTCTCA
GTAA
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