mRNA_H-paniculata_contig532.12727.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig532.12727.1
Unique NamemRNA_H-paniculata_contig532.12727.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig532.12727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig532contigH-paniculata_contig532:34263..34670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.441614-CDS-H-paniculata_contig532:34262..346311622930539.441614-CDS-H-paniculata_contig532:34262..34631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig532 34263..34631 +
1691481339.3177314-CDS-H-paniculata_contig532:34262..346311691481339.3177314-CDS-H-paniculata_contig532:34262..34631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig532 34263..34631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.4596736-UTR-H-paniculata_contig532:34631..346701622930539.4596736-UTR-H-paniculata_contig532:34631..34670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig532 34632..34670 +
1691481339.3287475-UTR-H-paniculata_contig532:34631..346701691481339.3287475-UTR-H-paniculata_contig532:34631..34670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig532 34632..34670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig532.12727.1prot_H-paniculata_contig532.12727.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig532 34263..34631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig532.12727.1

>prot_H-paniculata_contig532.12727.1 ID=prot_H-paniculata_contig532.12727.1|Name=mRNA_H-paniculata_contig532.12727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
FGAADLKRWVYQDNRISRFRLFICCAFISGFCPRFLVICLDAVLKTSNGL
LVVVIGKSVVWCSCLHSDYDHFVCGQSLFRFVSLLFCFPCLDKAQHKEGT
VMMDWIEILSYFLPLRTEKRLL*
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mRNA from alignment at H-paniculata_contig532:34263..34670+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig532.12727.1 ID=mRNA_H-paniculata_contig532.12727.1|Name=mRNA_H-paniculata_contig532.12727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig532:34263..34670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGGTGCCGCGGACTTGAAACGGTGGGTGTACCAGGACAACAGAATCAG
TCGCTTTCGGCTATTCATTTGTTGTGCCTTCATTTCAGGTTTTTGCCCTA
GGTTTTTGGTGATTTGTTTAGATGCCGTCTTAAAAACATCAAACGGGTTG
TTGGTTGTTGTTATTGGTAAAAGTGTTGTTTGGTGTTCTTGCCTCCACTC
CGATTATGACCATTTCGTATGTGGGCAGTCTCTTTTTCGTTTCGTTTCTT
TACTTTTCTGTTTTCCTTGTCTTGACAAGGCGCAACACAAAGAAGGAACG
GTGATGATGGATTGGATAGAAATACTAAGTTATTTTCTCCCGCTCCGAAC
AGAAAAAAGACTGTTGTAAGATTGTCACGAAAGGTCAATCGGTCCGATGC
ATGCATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig532:34263..34670+

>mRNA_H-paniculata_contig532.12727.1 ID=mRNA_H-paniculata_contig532.12727.1|Name=mRNA_H-paniculata_contig532.12727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig532:34263..34670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGGTGCCGCGGACTTGAAACGGTGGGTGTACCAGGACAACAGAATCAG
TCGCTTTCGGCTATTCATTTGTTGTGCCTTCATTTCAGGTTTTTGCCCTA
GGTTTTTGGTGATTTGTTTAGATGCCGTCTTAAAAACATCAAACGGGTTG
TTGGTTGTTGTTATTGGTAAAAGTGTTGTTTGGTGTTCTTGCCTCCACTC
CGATTATGACCATTTCGTATGTGGGCAGTCTCTTTTTCGTTTCGTTTCTT
TACTTTTCTGTTTTCCTTGTCTTGACAAGGCGCAACACAAAGAAGGAACG
GTGATGATGGATTGGATAGAAATACTAAGTTATTTTCTCCCGCTCCGAAC
AGAAAAAAGACTGTTGTAATTTGGTGCCGCGGACTTGAAACGGTGGGTGT
ACCAGGACAACAGAATCAGTCGCTTTCGGCTATTCATTTGTTGTGCCTTC
ATTTCAGGTTTTTGCCCTAGGTTTTTGGTGATTTGTTTAGATGCCGTCTT
AAAAACATCAAACGGGTTGTTGGTTGTTGTTATTGGTAAAAGTGTTGTTT
GGTGTTCTTGCCTCCACTCCGATTATGACCATTTCGTATGTGGGCAGTCT
CTTTTTCGTTTCGTTTCTTTACTTTTCTGTTTTCCTTGTCTTGACAAGGC
GCAACACAAAGAAGGAACGGTGATGATGGATTGGATAGAAATACTAAGTT
ATTTTCTCCCGCTCCGAACAGAAAAAAGACTGTTGTAA
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