mRNA_H-paniculata_contig53119.12718.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53119.12718.1
Unique NamemRNA_H-paniculata_contig53119.12718.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53119.12718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53119contigH-paniculata_contig53119:124..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930538.6863186-CDS-H-paniculata_contig53119:123..5041622930538.6863186-CDS-H-paniculata_contig53119:123..504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53119 124..504 +
1691481339.0073214-CDS-H-paniculata_contig53119:123..5041691481339.0073214-CDS-H-paniculata_contig53119:123..504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53119 124..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53119.12718.1prot_H-paniculata_contig53119.12718.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53119 124..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53119.12718.1

>prot_H-paniculata_contig53119.12718.1 ID=prot_H-paniculata_contig53119.12718.1|Name=mRNA_H-paniculata_contig53119.12718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
SAVFVCNRLQLRRQCDDNCCSYCGVAHTRTLLFPVTDCAAQHSQTGTAGV
VEVVLRNGLVSFISCILLHVRKSPRSIQVCQVGWSHGRCCSQLKLRLPYI
NPGLGMSPLHWTLTVTSRNHHHGTNS*
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mRNA from alignment at H-paniculata_contig53119:124..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53119.12718.1 ID=mRNA_H-paniculata_contig53119.12718.1|Name=mRNA_H-paniculata_contig53119.12718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig53119:124..504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCTGTTTTTGTCTGTAACAGGTTACAGCTGCGACGCCAGTGTGATGA
TAACTGCTGTTCGTATTGCGGAGTAGCTCACACACGTACGTTATTGTTTC
CTGTTACTGACTGTGCTGCACAACACTCTCAGACTGGTACGGCTGGGGTG
GTAGAAGTGGTCCTTCGCAATGGTCTGGTCTCTTTCATTAGCTGTATATT
GCTGCACGTCCGGAAAAGCCCCAGGTCGATACAAGTCTGTCAGGTGGGAT
GGTCACACGGTCGGTGCTGCTCCCAGCTCAAACTGAGGCTACCTTACATA
AACCCAGGATTGGGGATGTCACCGTTACATTGGACACTGACTGTAACGTC
CCGCAATCACCATCACGGAACAAATTCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig53119:124..504+

>mRNA_H-paniculata_contig53119.12718.1 ID=mRNA_H-paniculata_contig53119.12718.1|Name=mRNA_H-paniculata_contig53119.12718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig53119:124..504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCTGTTTTTGTCTGTAACAGGTTACAGCTGCGACGCCAGTGTGATGA
TAACTGCTGTTCGTATTGCGGAGTAGCTCACACACGTACGTTATTGTTTC
CTGTTACTGACTGTGCTGCACAACACTCTCAGACTGGTACGGCTGGGGTG
GTAGAAGTGGTCCTTCGCAATGGTCTGGTCTCTTTCATTAGCTGTATATT
GCTGCACGTCCGGAAAAGCCCCAGGTCGATACAAGTCTGTCAGGTGGGAT
GGTCACACGGTCGGTGCTGCTCCCAGCTCAAACTGAGGCTACCTTACATA
AACCCAGGATTGGGGATGTCACCGTTACATTGGACACTGACTGTAACGTC
CCGCAATCACCATCACGGAACAAATTCATGATCGGCTGTTTTTGTCTGTA
ACAGGTTACAGCTGCGACGCCAGTGTGATGATAACTGCTGTTCGTATTGC
GGAGTAGCTCACACACGTACGTTATTGTTTCCTGTTACTGACTGTGCTGC
ACAACACTCTCAGACTGGTACGGCTGGGGTGGTAGAAGTGGTCCTTCGCA
ATGGTCTGGTCTCTTTCATTAGCTGTATATTGCTGCACGTCCGGAAAAGC
CCCAGGTCGATACAAGTCTGTCAGGTGGGATGGTCACACGGTCGGTGCTG
CTCCCAGCTCAAACTGAGGCTACCTTACATAAACCCAGGATTGGGGATGT
CACCGTTACATTGGACACTGACTGTAACGTCCCGCAATCACCATCACGGA
ACAAATTCATGA
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